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Clarify data flow in GPU task assignment
2017-08-10
M
a
rk Abraha
m
Clarify d
a
ta
f
low in
G
PU task assignme
n
t
commit
|
commitdiff
|
tree
2017-08-07
Mark
A
br
a
ham
Simplifie
d
handling of GPU device IDs
commit
|
commitdiff
|
tree
2017-08-06
M
ark
Abrah
a
m
Split printhar
d
w
a
re from detecthardw
a
re
commit
|
commitdiff
|
tree
2017-07-27
M
.
Eric Irrgang
P
r
ovide STL make_unique template function
.
commit
|
commitdiff
|
tree
2017-07-24
Mark Abr
a
ham
Sepa
r
ated res
p
onsibilit
y
fo
r
cons
i
stency
ch
e
cking
commit
|
commitdiff
|
tree
2017-07-24
M
a
rk Ab
r
aha
m
Remov
e
u
nnecessa
r
y GPU c
h
ecki
n
g code
commit
|
commitdiff
|
tree
2017-07-20
Mar
k
A
braham
Cleaned up bUseGpu
i
n runner
commit
|
commitdiff
|
tree
2017-07-20
Peter
Kass
o
n
Rework a
n
d rename gmx_select_gpu_ids
commit
|
commitdiff
|
tree
2017-07-20
Mark Abrah
a
m
Stop duplicate p
r
intin
g
o
f
de
t
ected GP
U
s
commit
|
commitdiff
|
tree
2017-07-20
Mark Abraham
Fix use of
GMX_SIMD
in ow
n
-fftw buil
d
commit
|
commitdiff
|
tree
2017-07-18
M
ark A
b
raham
Co
n
v
e
r
ted
some const poin
t
ers int
o
co
n
st
r
ef
e
rences
.
.
.
commit
|
commitdiff
|
tree
2017-07-18
Mark
Ab
r
a
ham
Eliminated pick_nbnxn_resour
c
es
commit
|
commitdiff
|
tree
2017-07-13
Mark Abra
h
a
m
More
updates to
testi
n
g matrix
commit
|
commitdiff
|
tree
2017-07-10
Cars
t
en Kutzner
Added missin
g
.
m
dp fi
l
e doc
u
mentation for the
enf
o
rc
e
d
.
.
.
commit
|
commitdiff
|
tree
2017-06-09
Carsten
Kutzner
Moved essential
dynamics
i
n
i
t
i
alization call into do_md(
)
commit
|
commitdiff
|
tree
2017-06-09
Berk H
e
ss
Replace iso b
y
instead of
commit
|
commitdiff
|
tree
2017-06-09
Carsten Kutzner
Ado
p
t and
doc
u
ment impleme
n
t
a
tion policy for MD modules
commit
|
commitdiff
|
tree
2017-06-08
Berk
H
ess
Fix
C
OM pull force with
SD
commit
|
commitdiff
|
tree
2017-06-07
Berk
H
ess
Avoid
g
r
o
mpp
charge w
a
rning with r
o
unding
commit
|
commitdiff
|
tree
2017-06-05
Szilá
r
d
Pál
l
A
d
d CUDA 8
.
0
+
S
I
MD pre
-
submit test
commit
|
commitdiff
|
tree
2017-06-04
Be
r
k
H
ess
F
i
x checkpoint reading
w
ithout
energ
y
h
i
st
o
ry
commit
|
commitdiff
|
tree
2017-05-30
Mark Ab
r
aham
F
ix NVML error messag
e
s
commit
|
commitdiff
|
tree
2017-05-29
Jiri Kraus
Update FindNVML
t
o fix #2061
commit
|
commitdiff
|
tree
2017-05-27
Be
r
k Hess
Made
duplicat
e
ato
m
s
in b
o
ndeds an error
commit
|
commitdiff
|
tree
2017-05-23
Erik Lindahl
Updated c
o
ol qu
o
te
s
commit
|
commitdiff
|
tree
2017-05-23
Berk Hes
s
A
dd conserve
d
q
u
antity for Berendsen P-couple
commit
|
commitdiff
|
tree
2017-05-23
S
z
ilárd
Páll
A
d
d basic doxygen for th
e
Ve
r
l
et nonbo
n
ded module
commit
|
commitdiff
|
tree
2017-05-23
Berk Hess
A
dd conserved
q
.
f
or PR and Berendsen
T-couple
commit
|
commitdiff
|
tree
2017-05-23
Berk Hess
Make DD
s
etup obey PME restrictions
commit
|
commitdiff
|
tree
2017-05-22
Ber
k
Hess
Intr
o
duce ObservablesHistory cont
a
ine
r
commit
|
commitdiff
|
tree
2016-09-07
Mark
A
b
r
aham
Fix LYN char
g
es in amber03
commit
|
commitdiff
|
tree
2016-09-07
Mark Abraham
F
i
x amber
0
3 HIP charges
commit
|
commitdiff
|
tree
2015-07-05
Teemu Murt
o
la
Improve gmx help
-
export
Sphi
n
x reb
u
ild behavior
commit
|
commitdiff
|
tree
2014-01-08
P
e
te
r
Kass
o
n
C
heckp
o
inting
f
ix for Native Client
commit
|
commitdiff
|
tree
2013-12-29
Peter Kass
o
n
P
atch
f
or Native Client builds
.
commit
|
commitdiff
|
tree
2013-02-28
Peter
K
asson
Dec
l
aration-definiti
o
n consistency
nbxn_c
u
d
a
_
w
a
i
t
_g
p
u
.
commit
|
commitdiff
|
tree
2010-08-10
P
eter Kasson
M
erg
e
branch
'mast
e
r' of git@git
.
gr
o
mac
s
.
org:gromacs
commit
|
commitdiff
|
tree
2010-07-29
Peter Kasso
n
Me
r
ge branch '
m
a
ster
'
o
f
git@git
.
gromacs
.
org:gromacs
commit
|
commitdiff
|
tree
2010-07-29
Pe
t
er Kasson
Merge
b
ra
n
ch
'
m
ast
e
r' of g
i
t
@
git
.
gromacs
.
org:gromacs
commit
|
commitdiff
|
tree
2010-07-13
Peter Kasson
M
e
rge branch 'mas
t
er' o
f
git@git
.
gromacs
.
or
g
:g
r
omacs
commit
|
commitdiff
|
tree
2010-07-07
Peter Kasson
Chan
g
ed #ifdef opt
i
on
to allow for
c
ed
t
rr
w
rite on
.
.
.
commit
|
commitdiff
|
tree
2010-06-30
Peter Kasson
Merge branch
'mas
t
e
r
' of git@git
.
gromacs
.
org:
g
ro
m
acs
commit
|
commitdiff
|
tree
2010-06-29
P
eter Kasson
M
erge b
r
anch 'master' of git@gi
t
.
gro
m
acs
.
or
g
:g
r
omacs
commit
|
commitdiff
|
tree
2010-06-29
Peter Kasson
A
dded a few comments t
o
gmx_
m
embed
commit
|
commitdiff
|
tree
2010-06-25
Peter Kasso
n
Merge branch 'm
a
ste
r
' o
f
g
i
t
@git
.
gro
m
acs
.
org:gr
o
macs
commit
|
commitdiff
|
tree
2010-06-23
Peter Kass
o
n
ma
k
e CMake with GCC
defa
u
l
t
t
o
C99
o
ff (gcc 4
.
3
a
n
d
.
.
.
commit
|
commitdiff
|
tree
2010-06-20
Peter K
a
sson
fixed typo in previous
commit
commit
|
commitdiff
|
tree
2010-06-20
Peter Kasson
Modified st
a
t
.
c
t
rr file check for FAHCORE
.
commit
|
commitdiff
|
tree
2010-06-17
kasson
Changed HAVE_
C
OPYFILE check to HAV
E
_COPYFILE_H in futil
.
c
commit
|
commitdiff
|
tree
2010-06-17
kasson
Mer
g
e
branch 'master' of gi
t
:/
/
g
i
t
.
gr
o
macs
.
o
rg/groma
c
s
commit
|
commitdiff
|
tree
2010-06-16
k
as
s
on
F
i
xing #if statement
.
commit
|
commitdiff
|
tree
2010-06-16
kasson
Ad
d
ed
d
ef
i
ned() to #
i
f macros
commit
|
commitdiff
|
tree
2010-06-16
kasson
Merge branch 'mymaster'
commit
|
commitdiff
|
tree
2010-06-16
Peter Kasson
Changed some
SSE ty
p
ecasts
t
o
macros; fixing
I
CC/Windows
.
.
.
commit
|
commitdiff
|
tree
2010-05-13
Peter Kasson
made #defines consistent: F
A
HC
O
R
E
-> GMX
_
FA
H
CORE
commit
|
commitdiff
|
tree
2010-05-11
P
e
ter Kas
s
o
n
Added #ifdef HAVE_
S
IGUSR1 aro
u
nd SIG
U
SR1 refs in sighandler
.
c
commit
|
commitdiff
|
tree
2010-04-17
Peter
K
asson
M
e
rge
b
r
anch 'master' of git
@
git
.
gromacs
.
org:
g
rom
a
cs
commit
|
commitdiff
|
tree
2010-04-17
Peter
Kasson
Fixes for Wi
n
d
o
ws/ICC--typecasting
commit
|
commitdiff
|
tree
2010-04-12
kas
s
o
n
Fixed dumb t
y
po
s
w
ith last
co
m
mit; 2 er
r
or
me
s
s
a
ges
.
.
.
commit
|
commitdiff
|
tree
2010-04-12
k
a
s
son
Fix
e
d typec
a
sts that broke u
n
der intel compiler + d
o
uble
.
.
.
commit
|
commitdiff
|
tree
2010-04-09
kasson
Merge br
a
nch 'master
'
of git://g
i
t
.
grom
a
cs
.
org/gromacs
commit
|
commitdiff
|
tree
2010-04-09
kasson
Added line
fo
r
Dart
commit
|
commitdiff
|
tree
2010-04-04
Peter Ka
s
s
on
Me
r
ge bran
c
h
'master' of git@git
.
groma
c
s
.
or
g
:grom
a
cs
commit
|
commitdiff
|
tree
2010-04-04
Pete
r
K
asson
Mer
g
e
b
r
anch '
m
aster' of git
@
git
.
g
romacs
.
org:gromacs
commit
|
commitdiff
|
tree
2010-04-04
kasson
A
d
de
d
utili
t
y routin
e
.
commit
|
commitdiff
|
tree
2010-03-25
Peter Kasson
Changed divide-by-zero #defin
e
from divide() to div
i
d
e
_
err
.
.
.
commit
|
commitdiff
|
tree
2010-03-15
ka
s
so
n
One
more typo
.
commit
|
commitdiff
|
tree
2010-03-15
kas
s
on
F
ixed typ
o
s in GB inner d
i
electric commi
t
for so
m
e
.
.
.
commit
|
commitdiff
|
tree
2010-03-15
kass
o
n
Changed
G
eneraliz
e
d Bo
r
n scaling to
u
s
e epsilon_r
f
or
.
.
.
commit
|
commitdiff
|
tree
2010-03-12
Pe
t
er Kasson
Fixed C99
-
> C syntax fo
r
md_openm
m
.
c
commit
|
commitdiff
|
tree
2010-03-12
Peter Kass
o
n
R
everted duplicate fix fr
o
m
ff53e724
4
c832155f47269f4
5
9ec0ebe
.
.
.
commit
|
commitdiff
|
tree
2010-03-12
P
eter Ka
s
s
o
n
Min
o
r CMak
e
tw
e
aks an
d
Windows modifi
c
ations
.
commit
|
commitdiff
|
tree
2010-03-09
ka
s
son
Pu
l
led CMak
e
o
p
tion
out of
if statement
t
o fi
x
infi
n
it
e
.
.
.
commit
|
commitdiff
|
tree
2010-01-27
k
asson
Ad
d
ed fflibutil
to
CMakeLists
.
txt
commit
|
commitdiff
|
tree
2010-01-26
kasson
Check for
in
f
ini
t
e v
a
lu
e
s in LINCS warnings
.
commit
|
commitdiff
|
tree
2010-01-21
kasson
S
u
ppress
w
arning message in FAHCORE
.
commit
|
commitdiff
|
tree
2009-12-17
P
e
ter Kasso
n
Me
r
ge br
a
nc
h
'master' of git@
g
it
.
gromacs
.
o
r
g:gro
m
acs
commit
|
commitdiff
|
tree
2009-12-17
Peter
K
as
s
o
n
Minor fix for chec
k
pointing
.
commit
|
commitdiff
|
tree
2009-12-14
P
e
ter Kas
s
on
M
e
r
g
e branch 'master' of
git@
g
it
.
gromacs
.
or
g
:gro
m
acs
commit
|
commitdiff
|
tree
2009-12-14
Pet
e
r Kasson
Changed SSE
typecasts bac
k
t
o #defines for
p
or
t
ability
.
.
.
commit
|
commitdiff
|
tree
2009-12-14
Peter Kasson
Merge branch
'
m
aster' of git@git
.
gr
o
macs
.
org:gr
o
macs
commit
|
commitdiff
|
tree
2009-12-11
P
e
t
er Kasso
n
Me
r
g
e
branch 'master' of git@git
.
gromacs
.
org:
g
romacs
commit
|
commitdiff
|
tree
2009-12-10
ka
s
s
o
n
Ad
d
e
d CMake code to ena
b
le o
p
tion of building "old
.
.
.
commit
|
commitdiff
|
tree
2009-12-10
kasson
Work
a
rounds
for md5
.
commit
|
commitdiff
|
tree
2009-12-10
kasso
n
Added
C
Make code to enable opt
i
o
n
o
f
b
uilding "
o
ld
.
.
.
commit
|
commitdiff
|
tree
2009-12-10
kasso
n
F
ixes f
o
r MKL
.
Someo
n
e sho
u
ld prob
a
bly
chec
k
compatibili
t
y
.
.
.
commit
|
commitdiff
|
tree
2009-12-09
ka
s
son
Merge
b
ran
c
h '2dpme' of git
.
gromac
s
.
org:gromacs
into
.
.
.
commit
|
commitdiff
|
tree
2009-12-07
kasson
M
e
r
ge branch '2dpme' of gi
t
.
gro
m
acs
.
org:gromacs i
n
to
.
.
.
commit
|
commitdiff
|
tree
2009-12-07
k
a
s
s
on
Workarounds for md5
.
commit
|
commitdiff
|
tree
2009-11-11
Pet
e
r Ka
s
son
Merge bran
c
h 'master' of git@
g
it
.
groma
c
s
.
org:gromacs
commit
|
commitdiff
|
tree
2009-11-11
Pete
r
K
a
sson
P
K
bugfix for editconf
commit
|
commitdiff
|
tree
2009-11-11
P
e
t
er K
a
sson
Merge branc
h
'
m
ast
e
r
'
of git@git
.
g
romac
s
.
org:groma
c
s
commit
|
commitdiff
|
tree
2009-11-11
Pe
t
er Kasson
Ad
d
ed -a
l
ign and -aligncenter options fo
r
editconf
.
commit
|
commitdiff
|
tree
2009-11-09
Pe
t
er
Kasson
M
e
r
ge branch 'master
'
of
g
i
t
@
git
.
gro
m
a
c
s
.
org:gromacs
commit
|
commitdiff
|
tree
2009-11-09
P
ete
r
K
a
s
son
Fix to chang
e
seq
u
ential numbering in gencon
f
and res
i
due
.
.
.
commit
|
commitdiff
|
tree
2009-11-09
Peter Kasson
Residu
e
numb
e
r
ing funct
i
ona
l
ity
has change
d
.
A
dded
.
.
.
commit
|
commitdiff
|
tree
2009-11-08
Peter Kas
s
on
Merge branch
'
master'
o
f git
@
git
.
gr
o
macs
.
org:groma
c
s
commit
|
commitdiff
|
tree
2009-11-08
Pete
r
Kass
o
n
Added c
o
de to
restore o
l
d
b
e
havio
r
of genconf
-renum
b
e
r
.
.
.
commit
|
commitdiff
|
tree
2009-11-05
Peter Kasso
n
Modifie
d
genrestr
to
allow restr
a
ining o
n
ly p
a
irs within
.
.
.
commit
|
commitdiff
|
tree
2009-10-12
kasson
Pat
c
h
to ensure nonze
r
o
XTC
i
n FAHC
O
RE
.
commit
|
commitdiff
|
tree
next