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Remove continuation from convert_tpr
2016-09-10
B
erk Hess
Remove
c
ontinuation from
convert_tpr
commit
|
commitdiff
|
tree
2016-09-06
B
e
rk Hess
Consolidate MD algorithm atom setup
commit
|
commitdiff
|
tree
2016-09-04
Berk Hess
Merge br
a
nch
r
elease-2016
commit
|
commitdiff
|
tree
2016-09-03
Berk Hess
Cl
e
an up P
M
E flags
variable use
commit
|
commitdiff
|
tree
2016-09-02
Berk Hess
M
erge bran
c
h rele
a
se-5
-
1 into re
l
ease-2016
commit
|
commitdiff
|
tree
2016-09-02
Berk Hess
Fix Parrinello
-
Rah
m
an
w
ith nstpcouple>1
commit
|
commitdiff
|
tree
2016-08-30
B
erk Hess
Make virial reproducible
commit
|
commitdiff
|
tree
2016-08-27
Berk Hess
Red
u
ce rounding errors in SETT
L
E
commit
|
commitdiff
|
tree
2016-08-24
Berk He
s
s
F
ix Ewald surface+
3
DC cor
r
ections
commit
|
commitdiff
|
tree
2016-08-24
B
erk Hess
Me
r
ge bra
n
c
h
release-5-1
i
nto
rele
a
se-2016
commit
|
commitdiff
|
tree
2016-08-23
Berk Hess
Remove variable precision gro writing
commit
|
commitdiff
|
tree
2016-08-17
Berk Hess
F
ixed op
e
n
in
g
of wall table files
commit
|
commitdiff
|
tree
2016-08-15
Be
r
k Hess
Reduce FE p
a
ir-list
memo
r
y usage
commit
|
commitdiff
|
tree
2016-08-10
Berk Hes
s
Fi
x
dea
d
loc
k
w
i
th thread-
M
PI
commit
|
commitdiff
|
tree
2016-08-09
Berk Hess
Fix twin-cutoff for
GPU
LJ pot-switch
commit
|
commitdiff
|
tree
2016-07-07
Berk H
e
ss
Re
l
ax pull P
B
C
check
commit
|
commitdiff
|
tree
2016-07-05
Berk Hess
Add c
h
ecks for too m
u
ch memory
i
n g_nmeig
commit
|
commitdiff
|
tree
2016-07-03
Berk
H
ess
A
d
d gr
o
m
p
p
c
heck for pull gro
u
p
commit
|
commitdiff
|
tree
2016-06-28
Berk Hess
Prope
r
ly reset CUDA application c
l
ocks
commit
|
commitdiff
|
tree
2016-06-27
Berk He
s
s
U
s
e sysconf(_SC_NPROCESSOR
S
_ONLN)
commit
|
commitdiff
|
tree
2016-06-26
Berk Hess
Fix vs
i
te bu
g
with MPI+OpenMP
commit
|
commitdiff
|
tree
2016-06-24
Berk Hess
F
ix
Verl
e
t buffer ca
l
culation
with nstli
s
t
=
1
commit
|
commitdiff
|
tree
2016-06-23
Berk Hess
More accurate GPU list
spl
i
t
ti
n
g
commit
|
commitdiff
|
tree
2016-06-22
B
erk Hess
Updated OpenCLT
O
DOList
.
txt
commit
|
commitdiff
|
tree
2016-06-22
B
e
r
k
H
ess
Ad
d
nbnxn pair-
l
i
st rebalancing
commit
|
commitdiff
|
tree
2016-06-22
Berk Hess
Remove OpenMP overhe
a
d at
h
igh parallelizat
i
on
commit
|
commitdiff
|
tree
2016-06-22
Berk Hess
Correct GPU p
a
ir estim
a
te for list
s
p
litting
commit
|
commitdiff
|
tree
2016-06-21
Berk
Hess
Fix bu
g
w
i
th fbposres+M
P
I
+Op
e
nMP
commit
|
commitdiff
|
tree
2016-06-20
Ber
k
Hess
Increased tpx_incompat
i
ble_versio
n
t
o 30
commit
|
commitdiff
|
tree
2016-06-19
B
e
rk Hess
Remove w
a
r
nings o
n
che
c
kpoint mismatc
h
commit
|
commitdiff
|
tree
2016-06-17
B
er
k
Hess
Remove std
:
:
t
hre
a
d::h
a
rdware_concurrenc
y
()
commit
|
commitdiff
|
tree
2016-06-14
Berk Hess
F
i
x O
p
enCL er
r
or with
e
mpty d
o
main
s
commit
|
commitdiff
|
tree
2016-06-13
Berk H
e
ss
Handl
e
constraint e
r
rors w
i
th EM
commit
|
commitdiff
|
tree
2016-06-07
Berk
Hess
F
ix data race in hwin
f
o with thread-
M
P
I
commit
|
commitdiff
|
tree
2016-06-03
Berk Hess
H
andle
partially froze
n
a
n
d constr
a
ined atoms
commit
|
commitdiff
|
tree
2016-05-31
Berk Hes
s
Reposition nbnx
n
filler part
i
c
les
commit
|
commitdiff
|
tree
2016-05-31
Berk He
s
s
Avoid
nume
r
i
c
al overflow with overlapping atoms
commit
|
commitdiff
|
tree
2016-05-31
Berk Hess
Add check for finite energies
commit
|
commitdiff
|
tree
2016-05-30
B
e
rk
H
e
s
s
A
d
d gro
m
pp
c
hec
k
for
unbou
n
d atoms
commit
|
commitdiff
|
tree
2016-05-23
Berk
H
ess
F
ix bu
g
in v-resca
l
e
thermostat & re
p
lica
ex
c
hange
commit
|
commitdiff
|
tree
2016-05-10
Berk H
e
ss
Optimized
th
e
v
s
ite
t
hreading
commit
|
commitdiff
|
tree
2016-05-10
Berk Hess
Fix
C
UDA shmem
b
ug
commit
|
commitdiff
|
tree
2016-05-10
B
e
rk
H
e
ss
Support cmap with QM
M
M
commit
|
commitdiff
|
tree
2016-05-08
Berk He
s
s
Upd
a
te
m
dr
u
n te
r
mi
n
a
t
io
n
info
commit
|
commitdiff
|
tree
2016-05-06
Berk Hess
O
p
enMP parallelizatio
n
f
or pull
commit
|
commitdiff
|
tree
2016-04-20
B
erk Hess
F
i
x pul
l
legend w
i
t
h exte
r
nal
poten
t
i
a
l
commit
|
commitdiff
|
tree
2016-04-19
Berk
Hess
Allow rcoul
o
mb>rvdw with P
M
E
commit
|
commitdiff
|
tree
2016-04-19
Berk Hess
Broadcas
t
pull external poten
t
ial provider string
commit
|
commitdiff
|
tree
2016-04-19
Berk Hes
s
Fix gmx hbond gro
u
p overlap chec
k
commit
|
commitdiff
|
tree
2016-04-14
Berk H
e
s
s
Add QMMM
c
hecks
commit
|
commitdiff
|
tree
2016-04-03
B
erk Hess
Correct nrdf for 1
D
/2D systems
commit
|
commitdiff
|
tree
2016-03-31
B
erk Hess
Fi
x
inclu
d
es in readpull
.
c
pp
commit
|
commitdiff
|
tree
2016-03-31
Berk Hess
Ad
d
option for ext
e
r
nal pull p
o
tential
commit
|
commitdiff
|
tree
2016-03-30
Berk
H
e
s
s
C
orr
e
ct mdrun tMP
I
(
n
on-)parallel er
r
or message
commit
|
commitdiff
|
tree
2016-03-26
Berk Hess
Add real/SIMD
temp
l
ate
f
or
LJ-14 pairs
commit
|
commitdiff
|
tree
2016-03-22
Berk
H
ess
Avoid assertion
failure i
n
pme_
l
oadbal_
d
o
commit
|
commitdiff
|
tree
2016-03-22
Berk Hess
Make gmx vanhove work without PBC
commit
|
commitdiff
|
tree
2016-03-22
Be
r
k
Hess
LJ combi
n
a
t
ion rule
k
ernels for CUD
A
commit
|
commitdiff
|
tree
2016-03-21
Ber
k
Hess
M
ov
e
d pull
i
nitialization back to mdrunner
commit
|
commitdiff
|
tree
2016-03-18
B
erk Hess
Fix
n
on
-
normali
z
ation of
F
FT
autocorr
commit
|
commitdiff
|
tree
2016-03-14
Berk H
e
s
s
Remo
v
e restric
t
ion
o
n
d
i
h
d
raltypes orde
r
commit
|
commitdiff
|
tree
2016-03-12
Be
r
k Hess
Split
of
f
Fermi ker
n
el from CUDA kernel
commit
|
commitdiff
|
tree
2016-03-09
Berk
He
s
s
F
i
x Ewal
d
3
D
C dipole w
i
th Verlet sc
h
eme
commit
|
commitdiff
|
tree
2016-03-04
Ber
k
Hess
Converted csettle() to u
s
e rea
l
/Simd
R
eal template
commit
|
commitdiff
|
tree
2016-03-03
Berk
H
ess
Use
S
IMD trans
p
ose
scatter in bondeds
commit
|
commitdiff
|
tree
2016-03-03
Berk H
e
ss
U
s
e
rvec4 for
l
ist
e
d f
o
rce buffer
commit
|
commitdiff
|
tree
2016-02-27
Berk Hess
R
emove eps
f
ac from GPU kernel inner-loop
s
commit
|
commitdiff
|
tree
2016-02-27
Berk He
s
s
Minor code
r
eorde
r
ing in GPU kernels
commit
|
commitdiff
|
tree
2016-02-26
Berk Hess
Fix compilation with Simd4
F
l
o
at, without Simd
4
Do
u
ble
commit
|
commitdiff
|
tree
2016-02-19
Berk Hess
Fix excess
i
ve list splitting
commit
|
commitdiff
|
tree
2016-02-17
Be
r
k
Hess
Ren
a
me
d
nbnxn sta
t
i
c const i
n
ts
commit
|
commitdiff
|
tree
2016-02-11
Berk He
s
s
Add SIMD versi
o
n of pbc_dx_aiuc
commit
|
commitdiff
|
tree
2016-02-09
Ber
k
Hess
Replace
d
nbnxn search+grid sim
d
ma
c
ros
commit
|
commitdiff
|
tree
2016-02-07
Berk Hess
Fix i
n
correct c
m
a
p parsing
commit
|
commitdiff
|
tree
2016-02-05
Ber
k
Hess
F
ix incor
r
ect cmap parsing
commit
|
commitdiff
|
tree
2016-02-03
Be
r
k
Hess
R
eplaced literals in nbnxn lists by
ints
commit
|
commitdiff
|
tree
2016-02-03
Berk
Hess
Fix mdru
n
removing Ver
l
et buffer
wi
t
h E
M
commit
|
commitdiff
|
tree
2016-02-03
Berk Hess
Fix SETTLE
e
rror hand
l
ing
commit
|
commitdiff
|
tree
2016-01-29
Berk
H
ess
Added
documentation for pme grid indexing
commit
|
commitdiff
|
tree
2016-01-29
B
erk Hess
F
i
x TPI igno
r
ing PME mesh contributions
.
commit
|
commitdiff
|
tree
2016-01-29
Ber
k
He
s
s
Update -ntomp_pme -npme chec
k
commit
|
commitdiff
|
tree
2016-01-29
B
e
rk He
s
s
Add c
h
eck for doubl
e
p
ert
u
rbat
i
on
commit
|
commitdiff
|
tree
2016-01-29
Berk Hess
Fix LINCS
triangle constrai
n
t thread
issu
e
commit
|
commitdiff
|
tree
2016-01-28
B
erk Hess
Update pa
i
r-list buff
e
r manu
a
l
commit
|
commitdiff
|
tree
2016-01-24
Berk Hess
Fix
exa
c
t conti
n
uation from non-e
n
ergy s
t
eps
commit
|
commitdiff
|
tree
2016-01-24
Berk Hes
s
Fix
e
nergy file continuation
w
i
th md-vv
commit
|
commitdiff
|
tree
2016-01-24
B
erk Hess
Fix ener
g
y a
v
erage w
i
th conti
n
uation
commit
|
commitdiff
|
tree
2016-01-08
Berk Hess
Fix PME
loa
d
b
a
lancing skipp
i
ng a se
t
up
commit
|
commitdiff
|
tree
2015-12-29
B
e
rk Hess
Correct vector check
of gmx c
h
e
ck
commit
|
commitdiff
|
tree
2015-12-27
Berk He
s
s
Reor
g
a
n
ized domde
c
initiali
z
ation
commit
|
commitdiff
|
tree
2015-12-20
Berk H
e
s
s
Merge rele
a
s
e
-5-1 into
m
aster
commit
|
commitdiff
|
tree
2015-12-19
B
e
rk H
e
s
s
Bri
n
g perfo
r
mance e
s
t
imation up to date
commit
|
commitdiff
|
tree
2015-12-17
Ber
k
H
e
ss
Removed topo
l
ogy p
o
inters from D
D
struct
commit
|
commitdiff
|
tree
2015-12-16
B
erk Hess
Add
o
ne
el
e
ment to state rvec arrays
commit
|
commitdiff
|
tree
2015-12-12
B
e
rk Hess
Re
m
o
v
ed unus
e
d mdrun op
t
i
o
n
-
dn
commit
|
commitdiff
|
tree
2015-12-11
Berk Hess
Fix b
u
g wit
h
pull grou
p
weight
s
commit
|
commitdiff
|
tree
2015-12-07
Berk Hess
Moved pull params to mdt
y
pes/pull-par
a
m
s
.
h
commit
|
commitdiff
|
tree
2015-12-02
Ber
k
Hess
I
n
crease
p
db
c
h
a
in ids to 62
i
n
output
commit
|
commitdiff
|
tree
2015-12-02
Ber
k
Hess
Ref
a
ct
o
red set_pbc_dd
commit
|
commitdiff
|
tree
2015-12-02
Berk Hess
Made t
_
inputr
e
c co
n
st in PME load
ba
l
ancing
commit
|
commitdiff
|
tree
next