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Fix GPU X buffer ops with empty domain
2019-09-13
Szilárd Páll
F
ix GPU X buffe
r
ops
with
empty domain
commit
|
commitdiff
|
tree
2019-09-12
S
zilárd Pá
l
l
Reo
r
ganize on-GPU PME force
r
eduction f
l
ag handl
i
ng
commit
|
commitdiff
|
tree
2019-09-11
Szilár
d
P
á
l
l
Fix gpu
c
o
m
m matrix
commit
|
commitdiff
|
tree
2019-09-10
Szilárd Páll
Eliminate raw force flags i
n
do_
f
orce_lowle
v
e
l
(
)
commit
|
commitdiff
|
tree
2019-09-10
Szilárd Páll
Use thread-M
P
I
in the gpucomm
matrix
commit
|
commitdiff
|
tree
2019-09-09
Szilárd Pá
l
l
Assert the
t
ypes of OpenCL kernels argu
m
e
nt
s
commit
|
commitdiff
|
tree
2019-09-09
Szil
á
r
d Pá
l
l
Pass gmx::
F
orceFlags to
CPU
n
bnxm
d
ispatch cod
e
commit
|
commitdiff
|
tree
2019-09-09
Szilá
r
d Pá
l
l
Pass the new gmx
:
:Force
F
lags to
the
nbn
x
m
mod
u
le
commit
|
commitdiff
|
tree
2019-09-06
Szilárd Páll
Add
gpuupdate and
g
puco
m
m
O
nDemand tokens
commit
|
commitdiff
|
tree
2019-09-04
Szilárd Páll
Bump ARM
H
P
C tool
c
hain in po
s
t-sub
m
it to v19
.
3
commit
|
commitdiff
|
tree
2019-09-04
Szi
l
árd
P
áll
A
dd
b
ack a clang-tidy exception
commit
|
commitdiff
|
tree
2019-09-04
Szilárd Páll
Centralize mor
e
M
D/for
c
e shedule flags
commit
|
commitdiff
|
tree
2019-08-28
Szilá
r
d
Páll
Ad
d
clang-tidy night
l
y test with SIMD + OpenCL
commit
|
commitdiff
|
tree
2019-08-28
Szilárd Páll
Move n
o
n
b
onded GPU wait timing
into the
G
PU modu
l
e
commit
|
commitdiff
|
tree
2019-08-25
Szi
l
árd Páll
c
lan
g
-tidy 8
fixes for the GPU ho
s
t c
o
de-pa
t
h
commit
|
commitdiff
|
tree
2019-08-25
Szilá
r
d P
á
ll
F
u
rt
h
er f
i
xes
f
or cla
n
g-tidy cl
a
ng versi
o
n 8
commit
|
commitdiff
|
tree
2019-08-23
Szilárd Páll
F
i
x c
l
a
ng-tidy warnings in the Ope
n
CL bu
i
ld
commit
|
commitdiff
|
tree
2019-08-23
Szilárd Páll
Fi
x
clang tidy
w
a
r
n
ings in
CUDA build
commit
|
commitdiff
|
tree
2019-08-19
S
zilárd Páll
Bump clang
-
c
u
da post
-
submi
t
compiler/CUDA version
commit
|
commitdiff
|
tree
2019-08-19
Szilárd Páll
Switch t
o
A
R
M HPC tool
c
hain v19
.
2 in pos
t
-s
u
bmit
commit
|
commitdiff
|
tree
2019-08-19
Szilárd Páll
Work a
r
o
u
nd clang
CUDA device code
codegen bug
commit
|
commitdiff
|
tree
2019-08-16
Szilár
d
Páll
Fix si
m
_
u
til
.
cpp copyright hea
d
e
r
commit
|
commitdiff
|
tree
2019-08-15
S
z
ilárd Páll
Fix O
p
enC
L
g
ather redu
c
ti
o
n
commit
|
commitdiff
|
tree
2019-08-12
Szilárd Páll
Fix
h
wlo
c
f
ind package
naming an
d
quietness is
s
ues
commit
|
commitdiff
|
tree
2019-07-31
Sz
i
lárd P
á
ll
Store wcyc
l
e pointer in nonbo
n
ded_verlet_t
commit
|
commitdiff
|
tree
2019-07-31
Szilárd Páll
Fixes for F buf
f
er ops change
commit
|
commitdiff
|
tree
2019-07-31
Szil
á
rd Pá
l
l
Mov
e
cycle cou
n
ting
i
nt
o
the G
P
U
b
on
d
ed mo
d
ule
commit
|
commitdiff
|
tree
2019-07-31
Szilá
r
d Páll
Report when devel
o
p
ment f
e
at
u
re flags are us
e
d
commit
|
commitdiff
|
tree
2019-07-31
Szilárd Páll
M
o
v
e
end
of
step
GP
U
task lau
n
ch
e
s
t
o
a function
commit
|
commitdiff
|
tree
2019-07-25
Szil
á
r
d
P
áll
On
l
y stop the CUDA p
r
ofiler if there are devices
commit
|
commitdiff
|
tree
2019-07-22
Szilárd
Páll
Co
n
ditionall
y
pin GPU-related grid d
a
ta
commit
|
commitdiff
|
tree
2019-07-11
Sz
i
lár
d
Páll
Use
H
ostV
e
ctor for Grid/GridSet data ne
e
d on-G
P
U
commit
|
commitdiff
|
tree
2019-07-08
Szilárd Páll
Elimina
t
e a use of
d
ouble pr
e
cisi
o
n in the
G
PU bond
e
d
.
.
.
commit
|
commitdiff
|
tree
2019-07-04
Szilárd
P
áll
B
ump latest CUDA + gcc in the pre-sub
m
it mat
r
i
x
commit
|
commitdiff
|
tree
2019-07-04
Szil
á
rd Pál
l
Fix a
-
Wformat-truncation warni
n
g in tng
commit
|
commitdiff
|
tree
2019-07-01
Szilárd Páll
Ref
a
c
t
or tracking of GPU s
h
o
rt
-
range
work/skip
p
ing
commit
|
commitdiff
|
tree
2019-06-30
Szilárd
P
áll
Cr
e
ate dedicated subcount
e
r fo
r
nonbonded FEP
commit
|
commitdiff
|
tree
2019-06-28
Szilá
r
d Páll
Separate
C
PU
N
B kernel and buffer clearing subco
u
n
t
ers
commit
|
commitdiff
|
tree
2019-06-27
Szilárd Páll
Remove already
r
esolved p
o
st-sub
m
it
m
at
r
ix TODO
commit
|
commitdiff
|
tree
2019-06-24
S
zilárd
P
ál
l
Only use AVX512 in own-FFTW
i
f
G
ROMACS also
us
e
s it
commit
|
commitdiff
|
tree
2019-06-19
Szilárd Páll
Disable P
M
E
G
PU on Apple OpenC
L
commit
|
commitdiff
|
tree
2019-05-29
Szilárd Páll
Te
m
plate x buffer ops call
on whether
GPU
is
u
sed
commit
|
commitdiff
|
tree
2019-05-23
Szilá
r
d Pá
l
l
Fix mulitple link r
e
fs in dev-manu
a
l
commit
|
commitdiff
|
tree
2019-05-20
Szilárd Páll
Improve X buffe
r
ops
ker
n
el
commit
|
commitdiff
|
tree
2019-04-25
S
z
i
lárd
Páll
Fix clang warning about N
U
LL use
commit
|
commitdiff
|
tree
2019-04-25
Szi
l
árd Páll
Avoid usin
g
AtomLoc
a
lity::C
o
unt
a
s a valid value
commit
|
commitdiff
|
tree
2019-04-24
Szilárd Páll
Fix C
U
DA fallback shmem gat
h
er reduction
commit
|
commitdiff
|
tree
2019-04-18
S
zilá
r
d Páll
Fi
x
w
a
rning
s
& consolidate declarations
commit
|
commitdiff
|
tree
2019-04-16
S
zilárd Pál
l
Move funct
i
ons
o
pera
t
i
n
g
on enerdata o
u
t of force
.
c
p
p
commit
|
commitdiff
|
tree
2019-04-16
Sz
i
lárd Páll
Remove "coa
r
se
l
o
a
d
balancing
v
ar
s
" from f
o
rce
r
ec
commit
|
commitdiff
|
tree
2019-04-16
Szilárd Páll
Group scheme related cleanup
commit
|
commitdiff
|
tree
2019-04-16
S
zilárd
Páll
Remo
v
e
G
roup scheme neighbor se
a
rch wrappe
r
commit
|
commitdiff
|
tree
2019-04-15
Szilárd Páll
Add user guide no
t
e on AVX512 th
r
ot
t
le in GPU runs
commit
|
commitdiff
|
tree
2019-04-05
Szilárd Páll
Revert "Temporarily di
s
ab
l
e ARM HPC
compi
l
er i
n
pos
t
.
.
.
commit
|
commitdiff
|
tree
2019-04-05
Szilárd Páll
Revert
"Temporarily disable ARM
H
PC
compiler in post
.
.
.
commit
|
commitdiff
|
tree
2019-04-02
S
z
ilárd Páll
Temporarily disable ARM HPC compiler in post
-
su
b
m
i
t
commit
|
commitdiff
|
tree
2019-04-02
Szilárd Páll
Temporarily disab
l
e ARM H
P
C compil
e
r in post-submit
commit
|
commitdiff
|
tree
2019-03-28
Szilárd Pá
l
l
Better do
c
ument
G
MX
_
OPENM
P
_MAX
_
THREADS
commit
|
commitdiff
|
tree
2019-03-26
Szilárd Pá
l
l
Skip PBC cal
c
ulation when th
e
re are no li
s
ted
forces
commit
|
commitdiff
|
tree
2019-03-26
S
zilárd Páll
do_force_cut
s
VERLE
T
cleanup
commit
|
commitdiff
|
tree
2019-03-21
Szilárd
Páll
Reorder
P
BC se
t
up in d
o
_force_lowlev
e
l
commit
|
commitdiff
|
tree
2019-03-13
Szil
á
rd Pá
l
l
Re
o
rganize search-time code in do_force_
c
u
t
sVERLET
commit
|
commitdiff
|
tree
2019-03-13
Szilár
d
Pá
l
l
A
d
d
h
aveGpuBondedWork f
l
ag to PpFo
r
c
e
Work
l
o
a
d
commit
|
commitdiff
|
tree
2019-03-13
Szilárd Páll
Start
mo
d
ularizing forc
e
workload setup
commit
|
commitdiff
|
tree
2019-03-05
Szilárd P
á
ll
Rela
x
OpenCL gather kerne
l
barrier
o
n A
M
D
commit
|
commitdiff
|
tree
2019-03-02
Szilárd Páll
Encapsulate f
o
rce output setup in do_force_*
commit
|
commitdiff
|
tree
2019-03-01
Szilárd Páll
Cl
a
rify for
c
e
buff
e
r setup
c
ode in do_force
commit
|
commitdiff
|
tree
2019-02-19
Szilárd P
á
ll
D
isable inst
r
uction f
u
sio
n
on Power
8
commit
|
commitdiff
|
tree
2019-02-17
Szilárd
P
áll
I
mprove GPU target co
m
patibili
t
y e
r
r
or messa
g
e
commit
|
commitdiff
|
tree
2019-02-15
S
z
i
lárd
Páll
Extend
G
puEventSyn
c
h
ronizer to allo
w
on-device syn
c
commit
|
commitdiff
|
tree
2019-02-15
Sz
i
lárd Páll
E
xt
e
nd performa
n
c
e
con
s
iderations
on bonde
d
offload
commit
|
commitdiff
|
tree
2019-02-13
Szilárd Pál
l
Disable i
n
struction fusion on Power8
commit
|
commitdiff
|
tree
2019-02-13
Szilárd Páll
Minor refactoring in mdr
u
nnner
commit
|
commitdiff
|
tree
2019-02-12
S
z
i
l
árd P
á
ll
Min
o
r re
f
acto
r
o
f
g
puid / task mapping p
a
r
s
ing
commit
|
commitdiff
|
tree
2019-02-07
Szilárd Páll
Requi
r
e a 64-bi
t
platfo
r
m for Ope
n
CL
commit
|
commitdiff
|
tree
2019-01-30
Szilárd P
á
ll
Fix dou
b
le-increment
of GPU NB launch subcounter
commit
|
commitdiff
|
tree
2019-01-21
Szilárd Páll
Add CUDA CC 7
.
5 (Turin
g
) support with nv
c
c
commit
|
commitdiff
|
tree
2019-01-04
Szilárd Páll
F
i
x formatting
w
arnin
g
commit
|
commitdiff
|
tree
2019-01-02
Szi
l
árd Páll
Fix
clan
g
6 w
a
r
n
ing
commit
|
commitdiff
|
tree
2019-01-02
Szi
l
árd Páll
D
o not whiteli
s
t the use of Op
e
nC
L
1
.
1 API
commit
|
commitdiff
|
tree
2018-12-31
Szilárd
Páll
F
i
x rele
a
se
notes typo
commit
|
commitdiff
|
tree
2018-12-31
Szi
l
á
r
d Páll
Add CU
D
A CC 7
.
5
(Turi
n
g) support with nvcc
commit
|
commitdiff
|
tree
2018-12-27
S
zilárd Páll
Use std::swap in LINCS
commit
|
commitdiff
|
tree
2018-12-22
Szilárd
P
áll
Runtime
c
hec
k
of device OpenCL support
commit
|
commitdiff
|
tree
2018-12-21
Szilárd
P
á
l
l
Make jenkins own-
f
ftw verify
use local
ta
r
b
a
l
l
commit
|
commitdiff
|
tree
2018-12-20
Szilárd P
á
l
l
Fix
C
UDA
c
ompiled targe
t
-device compatibility
c
heck
commit
|
commitdiff
|
tree
2018-12-20
Szi
l
árd Páll
Correc
t
CUD
A
com
p
at
i
b
i
lity check
commit
|
commitdiff
|
tree
2018-12-20
Sz
i
lárd Pá
l
l
Merge "Merge branc
h
releas
e
-2018 into relea
s
e-2019
.
.
.
commit
|
commitdiff
|
tree
2018-12-18
S
zilárd Páll
Merge release
-
2019 bran
c
h
i
nto
m
aster
commit
|
commitdiff
|
tree
2018-12-17
Szilárd P
á
ll
Fix G
M
X_
B
U
I
LD_
O
W
N_FFTW_URL
CMake cache entry type
commit
|
commitdiff
|
tree
2018-12-14
Szilárd Pál
l
Enable ARM
P
L
i
n the armcla
n
g
b
uild
commit
|
commitdiff
|
tree
2018-12-13
Szil
á
r
d
Páll
Avoid spurious t
i
ming in bonded GPU laun
c
h subc
o
unt
e
r
commit
|
commitdiff
|
tree
2018-12-13
Szilá
r
d Páll
D
o
cument
the
F
P
e
xception in cuFFT 7
.
0
commit
|
commitdiff
|
tree
2018-12-12
S
zilár
d
P
á
l
l
I
m
prov
e
DLB report/note
commit
|
commitdiff
|
tree
2018-12-11
Szilárd
Páll
Tweak the b
o
nded GPU ener
g
y c
o
py/wait operations
commit
|
commitdiff
|
tree
2018-12-06
Szilárd P
á
ll
Add Bonded GPU l
a
unch overhead cycle sub
c
ounter
commit
|
commitdiff
|
tree
2018-12-06
Szilá
r
d Páll
S
w
ap the order o
f
G
PU
b
onded
a
n
d
nonbonded launch
commit
|
commitdiff
|
tree
2018-12-06
S
z
ilá
r
d Páll
Fix con
d
iti
o
nal i
n
nonlocal nbnxn GPU
work skipping
commit
|
commitdiff
|
tree
2018-12-06
Szilárd Páll
Split n
b
nxn input
c
op
y
an
d
kernel lau
n
ch
commit
|
commitdiff
|
tree
2018-12-05
Szilárd Páll
Correct thread count in th
e
P
ME GPU
r
ed
u
c
tion
commit
|
commitdiff
|
tree
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