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Only predict shells with velocities
2017-01-20
Berk Hess
Only pre
d
ict s
h
e
l
l
s
w
ith velocities
commit
|
commitdiff
|
tree
2016-12-14
Berk H
e
ss
Add
b
onded #thread runtime check
commit
|
commitdiff
|
tree
2016-12-09
Mark Abraha
m
F
i
x
l
ogic of TRR reading
commit
|
commitdiff
|
tree
2016-11-23
Berk Hess
Convert energyhistor
y
_t to use std::vector
commit
|
commitdiff
|
tree
2016-11-23
B
e
rk
H
e
ss
Use templa
t
ing in
c
heckpoint
.
c
pp
commit
|
commitdiff
|
tree
2016-11-01
Ber
k
H
ess
Fix time
label
print
in gmx vanh
o
v
e
commit
|
commitdiff
|
tree
2016-10-15
Berk Hess
Move energyhis
t
ory_t out of t_
s
tate
commit
|
commitdiff
|
tree
2016-10-13
T
eemu M
u
rtola
Use gmx_mto
p
_t i
n
selec
t
i
ons, part 2
commit
|
commitdiff
|
tree
2016-10-13
Berk Hess
Extend mtop_loo
k
up
.
h
commit
|
commitdiff
|
tree
2016-10-12
Ma
r
k Abraham
Make regressiontes
t
s
upd
a
t
e
r build w
o
rk for master
.
.
.
commit
|
commitdiff
|
tree
2016-10-12
Berk Hess
Fixed excep
t
i
o
n in us
u
sed resu
l
t
commit
|
commitdiff
|
tree
2016-10-12
Ber
k
H
e
ss
Ref
a
ctor NPT
e
n
er
g
y calculatio
n
commit
|
commitdiff
|
tree
2016-10-12
Berk
Hess
Restructure leap-frog integrators
commit
|
commitdiff
|
tree
2016-10-11
Berk H
e
ss
Spe
e
d
u
p mto
p
_util atom lookup
commit
|
commitdiff
|
tree
2016-10-10
Aleksei Iupin
o
v
F
i
x
t
rivial PME memory
l
eaks
commit
|
commitdiff
|
tree
2016-10-07
David van der Sp
o
el
Modularize elect
r
ic fie
l
d handling
commit
|
commitdiff
|
tree
2016-10-07
Be
r
k Hess
Changed fr->f_no
v
i
r
sum to
P
addedRVecVec
t
or
commit
|
commitdiff
|
tree
2016-09-16
Berk Hess
M
e
rge branch release-2
0
16
commit
|
commitdiff
|
tree
2016-09-13
Berk He
s
s
Mo
v
ed expa
n
ded e
n
semble history
to poin
t
er in
t_state
commit
|
commitdiff
|
tree
2016-09-06
B
er
k
Hess
Fix bug with
c
onju
g
a
t
e-g
r
adie
n
t
and
O
penMP
commit
|
commitdiff
|
tree
2016-09-05
Berk Hess
R
e
-enable flexible constraints w
i
th DD
commit
|
commitdiff
|
tree
2016-09-04
Be
r
k Hess
M
e
rge
branch rel
e
as
e
-
2016
commit
|
commitdiff
|
tree
2016-09-03
Ber
k
Hess
Clean up P
M
E f
l
ag
s
v
ariable use
commit
|
commitdiff
|
tree
2016-09-02
B
erk Hess
Merge b
r
anch release-5-
1
into release-2016
commit
|
commitdiff
|
tree
2016-08-24
Ber
k
Hess
Fix Ewald surface+3DC corrections
commit
|
commitdiff
|
tree
2016-08-24
Berk Hess
M
e
r
ge branch release-5-
1
i
nto release-2016
commit
|
commitdiff
|
tree
2016-08-23
Berk Hess
Remove
v
ar
i
able p
r
ecisi
o
n g
r
o
w
r
iti
n
g
commit
|
commitdiff
|
tree
2016-08-17
Berk Hess
Fixe
d
opening
of
w
all table files
commit
|
commitdiff
|
tree
2016-08-10
Berk Hess
Fix deadlock with th
r
ead-MPI
commit
|
commitdiff
|
tree
2016-08-09
Berk Hess
Fix tw
i
n-cu
t
of
f
for GP
U
LJ p
o
t-swi
t
ch
commit
|
commitdiff
|
tree
2016-07-05
Berk Hess
Add checks
f
or too much
m
emory in g_
n
m
eig
commit
|
commitdiff
|
tree
2016-06-20
Berk He
s
s
Increased
t
px_inc
o
mpatible_ve
r
sion to
3
0
commit
|
commitdiff
|
tree
2016-06-14
Berk Hess
Fix OpenCL err
o
r
w
ith empty domains
commit
|
commitdiff
|
tree
2016-06-14
S
z
i
l
árd Páll
Fix CUDA build with multiple compil
a
t
i
on units
commit
|
commitdiff
|
tree
2016-05-09
Erik Li
n
da
h
l
Improved de
s
cription fo
r
G
PU/CPU t
i
me ratio
commit
|
commitdiff
|
tree
2016-04-20
Berk H
e
s
s
Fix pull legen
d
with ext
e
rnal pot
e
ntial
commit
|
commitdiff
|
tree
2016-04-14
Berk Hess
A
dd QMMM ch
e
cks
commit
|
commitdiff
|
tree
2016-03-31
Berk H
e
ss
Fix includes in readpull
.
c
p
p
commit
|
commitdiff
|
tree
2016-03-22
B
e
rk Hess
M
ake gmx va
n
hove work witho
u
t PBC
commit
|
commitdiff
|
tree
2016-03-21
B
erk Hess
Moved
p
ul
l
i
n
itialization back to mdrunner
commit
|
commitdiff
|
tree
2016-03-19
M
a
rk Abrah
a
m
F
ix warnin
g
from GCC 6
commit
|
commitdiff
|
tree
2016-03-09
B
e
r
k Hess
Fix Ewald 3DC dipole with Verlet sche
m
e
commit
|
commitdiff
|
tree
2016-02-19
M
a
r
k
A
b
r
aham
Me
r
ge
branch
rel
e
a
se-5-1
commit
|
commitdiff
|
tree
2016-02-17
Berk
H
ess
Rena
m
ed nbnxn static co
n
st
ints
commit
|
commitdiff
|
tree
2016-02-05
Ber
k
Hess
Fi
x
i
ncor
r
ec
t
cma
p
parsing
commit
|
commitdiff
|
tree
2016-01-29
Berk
H
e
ss
Add
e
d documentati
o
n
for pm
e
grid indexin
g
commit
|
commitdiff
|
tree
2016-01-29
Berk Hess
Fix TPI ign
o
ri
n
g
PM
E
mesh c
o
n
tributions
.
commit
|
commitdiff
|
tree
2016-01-29
Ber
k
He
s
s
Update -n
t
o
mp_pme -npme c
h
e
ck
commit
|
commitdiff
|
tree
2016-01-20
A
nsgar Esztermann
A
d
d
missing initi
a
liza
t
ion in nbn
x
n_p
a
irlist_t
commit
|
commitdiff
|
tree
2015-12-20
Berk Hess
Mer
g
e rele
a
s
e-
5
-1 into mas
t
er
commit
|
commitdiff
|
tree
2015-12-19
Berk Hes
s
B
r
in
g
performance estimation up to date
commit
|
commitdiff
|
tree
2015-12-11
Berk Hess
F
ix bug with pull group weight
s
commit
|
commitdiff
|
tree
2015-12-02
Berk Hess
I
n
crease pdb chain
ids to 62 in
o
utput
commit
|
commitdiff
|
tree
2015-12-01
Berk Hess
Pull group count for coo
r
ds store
d
in tpr
commit
|
commitdiff
|
tree
2015-11-25
M
a
rk Abraham
Fix logic of dd_p
r
int_missing_inter
a
ctions exit
commit
|
commitdiff
|
tree
2015-11-19
Berk H
e
s
s
Removed
m
drun fatal_error with
P
3M-AD
commit
|
commitdiff
|
tree
2015-11-18
Berk Hess
R
e
moved Reaction-Field-nec
commit
|
commitdiff
|
tree
2015-11-11
Berk H
e
ss
Fixed (harmless) fp exception in wallcy
c
l
e
_
s
um
commit
|
commitdiff
|
tree
2015-11-09
Berk Hess
Cor
r
e
c
t LINCS dHd
l
contr
i
bution
commit
|
commitdiff
|
tree
2015-11-05
V
e
dran Miletić
Update explan
a
tion of replica e
x
c
h
ange out
p
u
t
commit
|
commitdiff
|
tree
2015-11-03
Mark A
b
raham
Mer
g
e
branc
h
r
ele
a
se-5-1
commit
|
commitdiff
|
tree
2015-09-16
B
e
rk Hess
Split nbnxn_grid
.
c off
f
r
o
m
n
bnxn_search
.
c
commit
|
commitdiff
|
tree
2015-09-15
B
e
r
k
Hess
Detect incorrect
c
yc
l
e
c
ounting
commit
|
commitdiff
|
tree
2015-08-25
Berk Hess
Simplify changing the tpx_ve
r
sion
commit
|
commitdiff
|
tree
2015-08-12
Berk Hess
Added c
o
nst q
u
alifiers to core MD routi
n
es
commit
|
commitdiff
|
tree
2015-06-30
Berk He
s
s
Fix inconsi
s
tent OpenMP au
t
o
m
ation
commit
|
commitdiff
|
tree
2015-06-26
Ale
x
ey Sh
v
etsov
Fix recent compilation issue
in pullcode
commit
|
commitdiff
|
tree
2015-06-22
Berk
Hess
Fix g_energy avera
g
e
/
RMSD bug
commit
|
commitdiff
|
tree
2015-05-23
Berk Hess
R
emo
v
ed static fro
m
va
r
iabl
e
s in gmx_
l
apack
commit
|
commitdiff
|
tree
2015-05-13
Berk Hess
Fi
x
ed C
U
DA err
o
r with empty domains
commit
|
commitdiff
|
tree
2015-05-11
Be
r
k H
e
ss
Changed FFTW
warning
f
rom AVX
t
o no SSE
commit
|
commitdiff
|
tree
2015-05-07
Berk
H
es
s
R
e
mo
v
ed n
o
n
-
ff atomtyp
e
s from oplsaa and ch
a
rmm27
commit
|
commitdiff
|
tree
2015-05-04
Berk Hess
Fixed GPU non-local F co
p
y
local conditiona
l
commit
|
commitdiff
|
tree
2015-04-28
Berk
Hess
R
e
-enabled FMA fo
r
AVX-128-FMA
commit
|
commitdiff
|
tree
2015-04-22
Berk Hes
s
Mer
g
e branch 're
l
ease-5-0'
commit
|
commitdiff
|
tree
2015-04-17
Berk
H
ess
Cor
r
ect
-ntm
p
i
a
uto for intel neh
a
lem an
d
older
commit
|
commitdiff
|
tree
2015-03-05
Berk
Hess
Made DD exclusion proc
e
ssing more efficient
commit
|
commitdiff
|
tree
2015-02-12
Berk
Hess
R
e
-fixed PME bu
g
with high OpenMP thread
count
commit
|
commitdiff
|
tree
2015-01-21
Berk Hess
Corrected RDTSCP warning text
commit
|
commitdiff
|
tree
2014-12-11
Berk Hes
s
Added g
r
ompp error fo
r
pul
l
i
ng to negative d
i
stance
commit
|
commitdiff
|
tree
2014-12-09
Berk
Hess
Fix recent
b
u
g
w
ith t
r
i
l
ini
c
1D D
D
commit
|
commitdiff
|
tree
2014-11-24
D
av
i
d van d
e
r Spoel
Add
e
d warnings
for ewald-geometry and surface-epsilon
commit
|
commitdiff
|
tree
2014-10-07
Ber
k
He
s
s
Fixes is
s
ue w
i
th
vsiten
and Ve
r
let buffers
commit
|
commitdiff
|
tree
2014-09-09
Berk Hess
Fixed
DD state
collection issue
commit
|
commitdiff
|
tree
2014-09-08
B
erk Hess
Check for implicit s
o
lvent
+ Verlet scheme
commit
|
commitdiff
|
tree
2014-08-25
Berk Hess
Fixed bu
g
s
in v
s
i
teN with OpenM
P
commit
|
commitdiff
|
tree
2014-08-02
B
erk He
s
s
Fixed
P
ME b
u
g
w
ith high Open
M
P t
h
rea
d
c
o
unt
commit
|
commitdiff
|
tree
2014-07-31
B
erk Hess
Avoid
d
iv
i
sion by 0 in n
b
nxn_search
commit
|
commitdiff
|
tree
2014-07-28
Chr
i
stian
W
enn
b
erg
Fix
o
verflow in L
J
-PME nbnxn ke
r
nels
commit
|
commitdiff
|
tree
2014-06-20
B
erk H
e
ss
Fixed shells with particle decomp
o
si
t
ion
commit
|
commitdiff
|
tree
2014-06-10
Berk Hess
Replaced gmx_h
o
stname_num by gmx_physicalnode_id
_
h
ash
commit
|
commitdiff
|
tree
2014-06-02
Berk Hess
Fi
x
ed g_en
e
rgy Ein
s
tein viscosit
y
commit
|
commitdiff
|
tree
2014-03-24
B
e
rk Hess
Adds c
u
t-off checks for triclinic
d
omain decom
p
o
sition
commit
|
commitdiff
|
tree
2013-12-03
Be
r
k Hes
s
Re
m
oved restric
t
ion of one refe
r
ence pu
l
l gr
o
up
commit
|
commitdiff
|
tree
2013-11-15
Berk Hess
corrected potent
i
a
l
nbnxn
SIMD m
e
m
or
y
issue
commit
|
commitdiff
|
tree
2013-11-08
Berk He
s
s
f
i
x
nbnxn atom sorting with dista
n
t
b
o
n
deds
commit
|
commitdiff
|
tree
2013-11-06
Szilar
d
Pall
e
n
a
ble
G
P
U shar
i
ng among tMP
I
ra
n
ks
commit
|
commitdiff
|
tree
2013-10-31
B
e
r
k Hes
s
reorgani
z
ed
G
PU detec
t
ion and
s
election
commit
|
commitdiff
|
tree
2013-10-22
Berk Hess
fixed
r
ecent bug with CUDA texture ob
j
ects
commit
|
commitdiff
|
tree
2013-10-22
Berk Hess
fixed OpenMP th
r
eads being
pinned to t
h
e sam
e
cor
e
s
commit
|
commitdiff
|
tree
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