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Support pinning in HostAllocator
2017-11-21
Mark Abraham
Support pinning in HostAllocator
commit
|
commitdiff
|
tree
2017-11-20
Mark Abraham
Fix nightly
m
atrix co
n
f
i
g
commit
|
commitdiff
|
tree
2017-11-19
Mark
Ab
r
aham
Fi
x
FindCUDA
.
cma
k
e for
-
W
u
ndef
commit
|
commitdiff
|
tree
2017-11-17
Mark A
b
r
aham
Use Ho
s
tAlloc
a
tionPolicy for
c
h
a
rgeA
commit
|
commitdiff
|
tree
2017-11-17
Mark
Abr
a
ham
Add c
h
e
c
k
i
ng fun
c
t
ion for whether a b
u
ffe
r
i
s
p
i
n
n
e
d
commit
|
commitdiff
|
tree
2017-11-17
Mark Abrah
a
m
Impr
o
ve
h
a
n
dli
n
g of
P
ME GPU force buffer
commit
|
commitdiff
|
tree
2017-11-10
Mark Abr
a
h
a
m
Im
p
ort cmake
M
odules/FindCUDA
.
cmake
commit
|
commitdiff
|
tree
2017-11-09
Mark Abrah
a
m
Prepared
t
_mdatoms fo
r
using vector
commit
|
commitdiff
|
tree
2017-11-09
M
ark
Abraham
Introduce Ho
s
tAlloca
t
ion
P
olicy
commit
|
commitdiff
|
tree
2017-11-07
Mark
Abraham
R
e
form gmx_p
m
e_pp alloc and use vect
o
r
commit
|
commitdiff
|
tree
2017-11-07
Mark
A
braham
Intr
o
duce
g
mx
o
pencl
.
h
commit
|
commitdiff
|
tree
2017-11-07
Mark
A
braham
Test clan
g
on ARM in nightly matrix
commit
|
commitdiff
|
tree
2017-11-07
Mark Abrah
a
m
Impro
v
e PME includ
e
s
commit
|
commitdiff
|
tree
2017-11-03
Mark Abraha
m
Merge "Merge branch release-20
1
6"
commit
|
commitdiff
|
tree
2017-11-02
Ma
r
k Abraham
Merge b
r
anch release-2016
commit
|
commitdiff
|
tree
2017-11-01
Mark A
b
raham
Fix t
h
r
e
ad-MPI rank choic
e
fo
r
orientation restrai
n
t
s
commit
|
commitdiff
|
tree
2017-11-01
Mark Abraham
Imp
r
ove
h
a
ndling of GPU IDs
commit
|
commitdiff
|
tree
2017-10-31
M
ark Abra
h
am
Update treatment of GP
U
c
o
mpati
b
i
l
ity data st
r
u
ctu
r
e
commit
|
commitdiff
|
tree
2017-10-30
Mark Abraham
Fix and update hw_info
commit
|
commitdiff
|
tree
2017-10-27
M
a
r
k
A
br
a
ham
Fix hw dete
c
tio
n
mo
r
e
commit
|
commitdiff
|
tree
2017-10-26
Mark A
b
r
a
ham
Mak
e
r
elease matri
x
work again
commit
|
commitdiff
|
tree
2017-10-26
Mark Abra
h
am
New quote
commit
|
commitdiff
|
tree
2017-10-25
Mark Ab
r
aham
Te
a
ch the
c
o
py
r
ight checker abo
u
t temp
l
ate
.
cpp
commit
|
commitdiff
|
tree
2017-10-20
M
ark Abraham
Clarify do
c
s for Fmax in
E
M
commit
|
commitdiff
|
tree
2017-10-20
Mark Abrah
a
m
Merge b
r
anch r
e
lea
s
e-2016
commit
|
commitdiff
|
tree
2017-10-16
M
ark Abraham
Merge branch re
l
ease-2016
commit
|
commitdiff
|
tree
2017-10-13
Mark Abraham
Up
d
ate tests for C++11 c
o
mpiler and st
a
ndard
library
commit
|
commitdiff
|
tree
2017-10-13
Mark Abrah
a
m
Fix c
p
uinfo o
n
c
l
an
g
+ non
-
x86
commit
|
commitdiff
|
tree
2017-10-11
Mark Abraham
Introduced header for communic
a
tion to/from PME r
a
nks
commit
|
commitdiff
|
tree
2017-10-11
Mark Abr
a
ham
Cle
a
ned up
ewaldcoeff for PME-o
n
ly rank
s
commit
|
commitdiff
|
tree
2017-10-11
Mar
k
Abraham
Use c
l
ang-5
i
n Jenkins
commit
|
commitdiff
|
tree
2017-10-07
Mar
k
Abrah
a
m
T
el
l
cppcheck that
.
cpp and
.
cu
f
i
les are c++
commit
|
commitdiff
|
tree
2017-10-05
Mark
A
bra
h
am
Conti
n
ue re
m
oving -nb
g
pu_cpu
commit
|
commitdiff
|
tree
2017-10-04
Mark Abra
h
am
Enable group-scheme
SI
M
D with
GMX
_
SIMD=AV
X
2_1
2
8
commit
|
commitdiff
|
tree
2017-10-03
Mark
Abr
a
h
am
In
t
roduce and u
s
e AlignedAlloc
a
tio
n
Policy
commit
|
commitdiff
|
tree
2017-09-19
M
a
rk Abraham
Update testi
n
g matrices
to test wi
t
h
(latest) icc-18
commit
|
commitdiff
|
tree
2017-09-17
Mark Abr
a
ha
m
Merge branch release
-
201
6
commit
|
commitdiff
|
tree
2017-09-15
Mark Abr
a
ham
Express in
t
e
n
t
of matrix release
b
uild types
e
x
plicitly
commit
|
commitdiff
|
tree
2017-09-15
M
a
rk Abraham
Bumped patch
v
ersion for next r
e
le
a
se
commit
|
commitdiff
|
tree
2017-09-15
M
a
rk Abra
h
am
Versio
n
201
6
.
4
commit
|
commitdiff
|
tree
2017-09-14
M
ark Abra
h
am
Form taska
s
signm
e
nt mo
d
u
le
commit
|
commitdiff
|
tree
2017-09-14
Mark Abraham
F
i
x
c
o
m
pat mo
d
ule definition
commit
|
commitdiff
|
tree
2017-09-12
Mark Abra
h
am
Merge b
r
a
n
ch relea
s
e-2
0
16
commit
|
commitdiff
|
tree
2017-09-07
Mar
k
Abraham
Introduce ty
p
e-safe GPU emulation variables
commit
|
commitdiff
|
tree
2017-09-07
Mark Abraham
Enable group-sche
m
e SIMD kernels on
r
ecent AV
X
e
xt
e
n
sions
commit
|
commitdiff
|
tree
2017-09-06
M
ark
A
b
raham
Prepare Verlet sc
h
eme l
a
ter in runner
commit
|
commitdiff
|
tree
2017-09-05
Mark Abraham
F
i
xes for
S
olaris
commit
|
commitdiff
|
tree
2017-09-05
Mark Abraham
F
ix use of GPU in
f
ormation
f
or threa
d
-MPI setup
commit
|
commitdiff
|
tree
2017-09-03
M
a
rk Abraham
Fix
compiler flags
f
or using MKL
commit
|
commitdiff
|
tree
2017-09-03
Mark Abraham
M
erge branch
r
elease-
5
-
1
into release-2016
commit
|
commitdiff
|
tree
2017-08-25
M
a
r
k Abraham
Fix
f
lat-botto
m
ed pos
i
tion
restraint
s
with mu
l
tiple
.
.
.
commit
|
commitdiff
|
tree
2017-08-23
Mar
k
Abraham
S
t
o
p
p
e
d checkpoint i
n
fluencing
p
a
rallelism setup
commit
|
commitdiff
|
tree
2017-08-22
Mark Abraham
Run GPU detection
even for mdrun -nb c
p
u
commit
|
commitdiff
|
tree
2017-08-22
Mark Abraham
Fi
x
e
d thread-M
P
I wit
h
non
-
default -npme
commit
|
commitdiff
|
tree
2017-08-22
Mark A
b
raham
Fix m
i
ssing declaration of G
M
X_UNUSED_VALUE
commit
|
commitdiff
|
tree
2017-08-22
Mark A
b
raham
M
e
rge branch release-20
1
6
commit
|
commitdiff
|
tree
2017-08-21
Mark
A
braham
Moved increase_nstli
s
t
(
) to nb
n
xn_tuning
.
h
commit
|
commitdiff
|
tree
2017-08-21
Mark Abraham
F
ix compilation
issues with ARM SIMD
commit
|
commitdiff
|
tree
2017-08-17
Mark Ab
r
aham
Repla
c
e c
o
nsiste
n
cy che
c
king with assertion
commit
|
commitdiff
|
tree
2017-08-16
Mark
Abraham
Parse
u
ser-
s
upplied GPU task assignment on
l
y
when needed
commit
|
commitdiff
|
tree
2017-08-16
Mark A
b
raham
Remove duplicate GPU non-usage hi
n
t
commit
|
commitdiff
|
tree
2017-08-16
Mar
k
Abr
a
ham
Moved log
g
ing functi
o
n
ality into GPU usag
e
report
commit
|
commitdiff
|
tree
2017-08-15
Mark A
b
r
aham
Merge bra
n
ch r
e
lease
-
5-1 into release-2
0
16
commit
|
commitdiff
|
tree
2017-08-15
Mar
k
Abraham
Fix valu
e
o
f
Ewald shift
commit
|
commitdiff
|
tree
2017-08-10
Mark Ab
r
a
h
a
m
Clarify data
f
low in GPU
ta
s
k
a
ssignment
commit
|
commitdiff
|
tree
2017-08-07
M
ark
Ab
r
aha
m
Fix i
n
c
lude
d
ependency
for
g
e
te
n
v
commit
|
commitdiff
|
tree
2017-08-07
Mark Abraham
Simplified handling
of G
P
U device
IDs
commit
|
commitdiff
|
tree
2017-08-06
Mark Abra
h
am
Simpl
i
fy resource-divisi
o
n efficiency check
commit
|
commitdiff
|
tree
2017-08-06
Mark A
b
ra
h
am
Sp
l
it pr
i
nt
h
ardware from dete
c
thardware
commit
|
commitdiff
|
tree
2017-08-06
Mark Abraham
De
c
ouple task
a
ssignment
f
rom task execution
commit
|
commitdiff
|
tree
2017-08-06
Mark Abraham
R
emov
e
d
u
n
used host-side allocation code
commit
|
commitdiff
|
tree
2017-08-04
Mark Abraham
S
t
op using hwinfo
_
g for reporting code
commit
|
commitdiff
|
tree
2017-08-03
M
a
rk
A
b
rah
a
m
Rem
o
ved unused include
statemen
t
s
commit
|
commitdiff
|
tree
2017-08-01
Mark
Abraha
m
Intr
o
duced Mdrunn
e
r high-level class
commit
|
commitdiff
|
tree
2017-07-27
Mar
k
Abraham
E
n
h
a
nce cmake and releng
h
andling of GMX_USE_RD
T
SCP
commit
|
commitdiff
|
tree
2017-07-24
M
ark Abr
a
h
am
Separated resp
o
nsibility for c
o
nsistency
c
h
e
c
ki
n
g
commit
|
commitdiff
|
tree
2017-07-24
Mark
A
braham
Remove un
n
e
cessary GPU checking code
commit
|
commitdiff
|
tree
2017-07-20
Mark Ab
r
aham
Clean
e
d up
b
UseGpu
i
n r
u
nner
commit
|
commitdiff
|
tree
2017-07-20
Mark Abraham
Stop dupl
i
c
a
te
p
rinting
of
d
etected GP
U
s
commit
|
commitdiff
|
tree
2017-07-20
Mark Abraham
Fix use of
GMX_SIMD in own-fft
w
build
commit
|
commitdiff
|
tree
2017-07-19
Ma
r
k A
b
rah
a
m
Ma
d
e post-submit config to tes
t
clan
g
+openmp
.
commit
|
commitdiff
|
tree
2017-07-19
M
a
r
k Ab
r
a
h
a
m
I
m
p
r
ove CMake implementation for GMX
_
SIMD
commit
|
commitdiff
|
tree
2017-07-18
M
a
rk Abraham
Converted some const
p
o
i
n
ters into const references
.
.
.
commit
|
commitdiff
|
tree
2017-07-18
M
a
rk Abraham
Eliminated pick_nbnxn_resources
commit
|
commitdiff
|
tree
2017-07-14
M
a
r
k
Abraham
Implemented grompp -po for options-st
y
le mdp
handling
commit
|
commitdiff
|
tree
2017-07-14
Mark
Abraham
Clean u
p
cmake build host detection
commit
|
commitdiff
|
tree
2017-07-13
Mark A
b
r
aham
C
l
e
an up
g
m
x_
m
d
run()
commit
|
commitdiff
|
tree
2017-07-13
Mark Abr
a
ham
Cleaned
u
p mdrunne
r
_star
t
_threads
commit
|
commitdiff
|
tree
2017-07-13
M
ark Abraham
Mor
e
updates to testin
g
matr
i
x
commit
|
commitdiff
|
tree
2017-07-07
Mark Abraham
Ref
a
ctor error handl
i
ng
i
n
init_
g
pu
commit
|
commitdiff
|
tree
2017-07-06
Mark
A
b
r
a
ham
Simplify gmx_gpu_opt_t
commit
|
commitdiff
|
tree
2017-07-04
M
a
rk A
b
raham
Clean up pick_nbnxn
_
r
e
s
ources
commit
|
commitdiff
|
tree
2017-07-01
Mar
k
Abraham
Cleaned up GPU e
m
ul
a
tion l
o
g
i
c
commit
|
commitdiff
|
tree
2017-06-28
Mark Abr
a
ham
Cleaned up
high-lev
e
l boo
l
ean var
i
able naming
commit
|
commitdiff
|
tree
2017-06-28
Mark Abraham
Fix s
p
ecification for gcc
-
6
commit
|
commitdiff
|
tree
2017-06-28
Mark Ab
r
aham
Me
r
ge branch rele
a
se-2016
commit
|
commitdiff
|
tree
2017-06-27
M
a
r
k Abra
h
a
m
Minor im
p
rovements to test co
n
figs
commit
|
commitdiff
|
tree
2017-06-22
Mark A
b
rah
a
m
Consolidated logic for choosing numbe
r
of threa
d
-MPI
.
.
.
commit
|
commitdiff
|
tree
2017-06-22
Mark
Abraham
Rep
l
ace mi
s
name
d
nbnxn_gpu
_
accelera
t
ion_supported
commit
|
commitdiff
|
tree
2017-06-22
Mark Abraham
Cons
o
l
idat
e
and fix logi
c
f
o
r mdrun
-
nb
and
-
gpuid
commit
|
commitdiff
|
tree
next