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Moved conditional cmake code for vmdio.
2014-02-10
Dav
i
d v
a
n der S
p
oel
Moved conditi
o
nal cmake
c
ode for
vmdio
.
commit
|
commitdiff
|
tree
2013-12-23
David van
d
er
Spoel
F
i
xed
compilati
o
n issue due to gcc4
.
8
commit
|
commitdiff
|
tree
2013-07-24
David
va
n
der
Spoel
Fixes
#
1
3
12 uninitialized erro
r
in g_enemat
.
commit
|
commitdiff
|
tree
2013-05-16
D
avid van
d
er Spoel
Fixed
two compilati
o
n issues
.
commit
|
commitdiff
|
tree
2013-05-02
Dav
i
d v
a
n der
S
p
o
e
l
Fix
e
s #1238 g_hydord
e
r
d
o
es not call s
e
t_
p
bc
.
commit
|
commitdiff
|
tree
2013-03-07
Davi
d
van
der Spoel
Fixes #1183 PBC
bu
g
in g_mindist
commit
|
commitdiff
|
tree
2013-02-13
David van
der Spoel
Plain text q
u
o
te
s
.
commit
|
commitdiff
|
tree
2012-11-26
David van
d
er Spoel
Fixes #1035 NaN in g_clus
t
er ou
t
p
u
t
.
commit
|
commitdiff
|
tree
2012-11-20
David van de
r
Sp
o
el
Fix
e
s
b
u
g in g_hbond that makes it pro
d
uce
f
a
t
al error
.
commit
|
commitdiff
|
tree
2012-10-21
David van der Spoel
Fixed Bug #
5
9
3 ab
o
ut memory hole
i
n trjcat
.
commit
|
commitdiff
|
tree
2012-10-04
David van der Spoel
Set
r
etu
r
n val
u
e to FALSE (0) in es
t
imate_d
t
in
l
i
b
x
d
rf
.
c
commit
|
commitdiff
|
tree
2012-09-07
David van der Spoe
l
Adapted NM
R
relate
d
d
ata to new pdb format
.
commit
|
commitdiff
|
tree
2012-09-04
David van d
e
r Spoel
Made tut
o
r
i
al
s
lightly les
s
confusi
n
g
.
commit
|
commitdiff
|
tree
2012-08-16
David
van d
e
r Spoel
Optional co
m
putati
o
n of fluc
t
.
props
i
n
g_energy
.
Fixes
.
.
.
commit
|
commitdiff
|
tree
2012-06-30
David v
a
n der Spoe
l
Fixed bug in free
e
ner
g
y calculation f
o
r Morse p
o
tentia
l
s
commit
|
commitdiff
|
tree
2012-06-21
David van der Spoel
F
ixes #961 - Shake reports w
r
ong e
r
ror
commit
|
commitdiff
|
tree
2012-03-17
David van der Spoel
Re
m
oved qh
o
p files f
r
om this
branc
h
.
commit
|
commitdiff
|
tree
2012-03-10
David van
d
er
S
poe
l
V
ibr
a
tion spectra from
v
eloc
i
ty ACF or N
o
rmal modes
.
commit
|
commitdiff
|
tree
2012-01-31
David van der Spoel
C
h
ang
e
d order o
f
p
arameters
in
t
o
p
f
ile
commit
|
commitdiff
|
tree
2012-01-25
Dav
i
d va
n
der S
p
oel
Ad
d
ed two new
b
ond
e
d functi
o
n
s
.
commit
|
commitdiff
|
tree
2012-01-17
Da
v
i
d
v
a
n
d
e
r
Spoel
R
eplace
s
tderr by s
t
d
o
u
t
in edit
c
o
n
f
terminal
o
ut
p
ut
.
.
.
commit
|
commitdiff
|
tree
2012-01-04
David
van
de
r
S
p
oel
Introduced fatal err
o
r
in grompp fo
r
incorr
e
ct use
.
.
.
commit
|
commitdiff
|
tree
2011-09-21
David van der Spoel
Commente
d
ou
t
part of this new program that was not
.
.
.
commit
|
commitdiff
|
tree
2011-09-21
David
v
a
n
der Spoel
Fix
e
d
docu
m
entation issue des
c
ribed in redmine issue
.
.
.
commit
|
commitdiff
|
tree
2011-09-21
David
v
an de
r
Spoel
Fixed document
a
t
ion issue described i
n
red
m
ine issu
e
.
.
.
commit
|
commitdiff
|
tree
2011-09-19
D
avi
d
v
a
n
der Spoel
Fixed
compilat
i
on issues
commit
|
commitdiff
|
tree
2011-09-19
David van der Spoel
R
esolved gerrit issue https:
/
/g
e
rrit
.
gromacs
.
o
r
g
/#ch
a
nge,1
2
6
commit
|
commitdiff
|
tree
2011-09-13
David va
n
der Spoel
A
d
d
ed w
a
rnin
g
line
.
commit
|
commitdiff
|
tree
2011-05-23
David v
a
n der Spoel
Re-implemented th
e
fl
u
ctuation
a
n
alys
i
s, b
a
sed o
n
Enthalpy
.
.
.
commit
|
commitdiff
|
tree
2011-05-23
David
v
an der Sp
o
el
Re-
i
mp
l
emented
th
e
fluctuatio
n
a
nalysis, base
d
on Enthalpy
.
.
.
commit
|
commitdiff
|
tree
2011-04-10
David va
n
der S
p
oel
Merge br
a
nch
'rel
e
ase-4-5-patches' of git
.
g
romacs
.
o
r
g
.
.
.
commit
|
commitdiff
|
tree
2011-04-10
David van der Spoel
Added g_hydorde
r
.
1
man page
.
commit
|
commitdiff
|
tree
2011-04-06
David van der Spoel
Fixed hea
d
er for g
m
x_conect_i
n
it
commit
|
commitdiff
|
tree
2011-04-06
David van
d
er Sp
o
el
Fixe
d
he
a
der f
o
r gmx_conec
t
_init
commit
|
commitdiff
|
tree
2011-04-04
David
v
an der Spoel
N
e
w entry
commit
|
commitdiff
|
tree
2011-01-22
Davi
d
v
a
n der Spoe
l
Fixed bug 678
which was due to cal
l
ing gmx_
f
atal without
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
David van der Spoel
F
ixed bug 67
8
which
w
as due t
o
c
a
ll
i
n
g
g
mx_
f
atal w
i
thout
.
.
.
commit
|
commitdiff
|
tree
2010-12-23
David van der Spoel
Merge b
r
an
c
h 'release-4-5-
p
a
tches'
commit
|
commitdiff
|
tree
2010-12-23
David van der
Spoel
Fixed bug in statistics w
h
ich did not a
l
low
fitting
.
.
.
commit
|
commitdiff
|
tree
2010-12-11
D
a
v
id v
a
n der Spo
e
l
Merg
e
branch 'rel
e
ase-
4
-5-p
a
tches'
commit
|
commitdiff
|
tree
2010-12-11
David van der Spoel
M
e
rge br
a
n
ch 'releas
e
-4-5
-
patches' of
g
i
t
.
gromacs
.
org
.
.
.
commit
|
commitdiff
|
tree
2010-12-11
David van der Spoel
M
e
rge branch '
m
aste
r
' of git
.
g
romacs
.
org:gromacs
commit
|
commitdiff
|
tree
2010-12-11
D
av
i
d van
d
er Spoel
Me
r
g
e bran
c
h 'release-4-5-pa
t
ches'
commit
|
commitdiff
|
tree
2010-12-11
David van der Spoel
Added 1 qu
o
te
.
commit
|
commitdiff
|
tree
2010-11-28
D
a
vid van der Spo
e
l
Merge
b
ranch 'r
e
le
a
se-4-5-patches'
commit
|
commitdiff
|
tree
2010-11-28
David van der Spoe
l
Fixed bugzilla 616 about formatting in the help t
e
xt
.
commit
|
commitdiff
|
tree
2010-11-18
David van der Spoel
Made printing
in check_multi
_
init c
o
ndit
i
onal, dep
e
n
d
ing
.
.
.
commit
|
commitdiff
|
tree
2010-10-28
Da
v
i
d van der Spoel
Merge branc
h
're
l
ease-4-
5
-patches'
of git
.
grom
a
cs
.
org
.
.
.
commit
|
commitdiff
|
tree
2010-10-28
David van der S
p
oe
l
Fixed bug 604
a
s reque
s
ted
.
commit
|
commitdiff
|
tree
2010-10-08
David v
a
n
der
Spoel
Merg
e
bra
n
ch 'release
-
4-5-patche
s
' o
f
gi
t
.
gromacs
.
org
.
.
.
commit
|
commitdiff
|
tree
2010-09-28
D
av
i
d van der Spoel
Re-added g_kinetic
s
t
o src/too
l
s/M
a
kefile
.
am
commit
|
commitdiff
|
tree
2010-09-24
D
avid van der Spoe
l
Upda
t
e
d
to r
e
flect bug 557
.
commit
|
commitdiff
|
tree
2010-09-17
D
a
vi
d
van der
S
p
o
el
Re
m
oved gmx_membed from cmake files as w
e
ll
.
commit
|
commitdiff
|
tree
2010-09-16
David van
der Spo
e
l
Me
r
ge br
a
nch
'
releas
e
-4-5-pat
c
he
s
'
commit
|
commitdiff
|
tree
2010-09-16
David van
d
e
r
Spoel
Corrected name of one o
f
t
he develop
e
r
s listed
i
n header
.
commit
|
commitdiff
|
tree
2010-09-14
David v
a
n
d
er S
p
oel
Merge branch 'release
-
4-5-
p
atches'
commit
|
commitdiff
|
tree
2010-09-14
Da
v
id van
d
er Spoel
Fixed bug 553 by checking whet
h
er
a
n atom name is lon
g
er
.
.
.
commit
|
commitdiff
|
tree
2010-09-12
Da
v
id van der Spo
e
l
Fixed demo to work with
n
ew
pdb2gm
x
that requi
r
es two
.
.
.
commit
|
commitdiff
|
tree
2010-08-30
David
van der Spoel
D
i
sabled
compilation of g_membed for
the time b
e
ing
.
commit
|
commitdiff
|
tree
2010-08-30
D
a
v
id van der Spoel
Merge branch 're
l
ease-4-5-patche
s
'
commit
|
commitdiff
|
tree
2010-08-30
D
a
v
i
d van
der Spo
e
l
A
d
ded one
q
uote
.
commit
|
commitdiff
|
tree
2010-08-25
David van d
e
r Sp
o
el
Fixed compilatio
n
of these resolved conflic
t
s as we
l
l
.
.
.
commit
|
commitdiff
|
tree
2010-08-25
David van der Spoel
f
ixe
d
c
onf
l
ict
s
.
commit
|
commitdiff
|
tree
2010-08-25
David
van der Spo
e
l
M
e
rge branch 'release-4-5-patches'
commit
|
commitdiff
|
tree
2010-08-25
David van der Spoel
Made
g
e
nrestr -const
r
to produce constrain
t
s of type
.
.
.
commit
|
commitdiff
|
tree
2010-08-22
D
a
v
id
v
a
n d
e
r Spoel
Merge br
a
nch
'
rele
a
se-
4
-5-patches'
commit
|
commitdiff
|
tree
2010-08-22
David v
a
n der Spoel
Fix
e
d bug 417
.
commit
|
commitdiff
|
tree
2010-08-19
David v
a
n der Spoel
Fixes
m
ore misery in
f
unction skipstr, w
h
e
re pointers
.
.
.
commit
|
commitdiff
|
tree
2010-08-19
David v
a
n
d
er Sp
o
e
l
Ad
d
ed two miss
i
ng
i
nc
l
u
de files
.
Fixed horrible codin
g
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
D
avid van d
e
r Spoel
Added hea
d
er file to physi
c
s
.
c
commit
|
commitdiff
|
tree
2010-08-16
D
avi
d
v
an der Sp
o
el
Added r
o
utines to physics
.
c fo
r
converting a string
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Dav
i
d van der Spoel
Add
e
d
a
file physics
.
c
with rout
i
nes that co
n
vert values
.
.
.
commit
|
commitdiff
|
tree
2010-08-11
D
a
vid van der Spoel
Added const in
h
eader for
the
split fu
n
ction a
s
w
ell
.
commit
|
commitdiff
|
tree
2010-08-11
Davi
d
v
an de
r
Spoe
l
Made str argume
n
t to fu
n
ction split to be of ty
p
e const
.
.
.
commit
|
commitdiff
|
tree
2010-08-04
David van der Spoel
Merge
b
r
a
nc
h
'r
e
lease
-
4-5-patches'
commit
|
commitdiff
|
tree
2010-08-04
Davi
d
van der Spoel
Fixed reuse of variable as temp variable be
f
or
e
pr
i
nting
.
.
.
commit
|
commitdiff
|
tree
2010-08-03
D
avid van der Spoel
Merge bra
n
ch 'release-4-5-patche
s
'
commit
|
commitdiff
|
tree
2010-08-03
David
van der Spo
e
l
Fi
x
ed bug 487 according t
o
provided pa
t
c
h
.
commit
|
commitdiff
|
tree
2010-08-03
D
a
vid v
a
n
d
e
r Spoel
Merg
e
branch
'
release-4-5-patches'
commit
|
commitdiff
|
tree
2010-08-03
D
avi
d
van der Spoel
Fi
x
e
d
doc
u
menta
t
ion text a
c
cording to bugzilla 486
commit
|
commitdiff
|
tree
2010-08-01
David van
d
er Spoel
M
e
r
ge b
r
anch 'release-4-5-patche
s
' of
g
it
.
gromac
s
.
org
.
.
.
commit
|
commitdiff
|
tree
2010-08-01
David va
n
d
er Spoel
M
o
ved pdb2t
o
p
.
h
f
r
o
m
s
rc/ke
r
n
el to include
to all
o
w
.
.
.
commit
|
commitdiff
|
tree
2010-07-31
David
van der Spoel
R
e
n
amed typen
a
me to my_ty
p
ena
m
e in
i
ndex
.
c since
t
ypename
.
.
.
commit
|
commitdiff
|
tree
2010-07-15
David van der Spoel
Fi
x
ed co
m
pila
t
ion is
s
ue correspo
n
din
g
to bug
4
68
commit
|
commitdiff
|
tree
2010-07-13
David v
a
n der Sp
o
el
F
i
xed
bug 466 by commenting o
u
t th
e
offending lines
.
.
.
commit
|
commitdiff
|
tree
2010-07-08
David
v
a
n der S
p
oel
Mer
g
e branch 'm
a
ster' of git
.
gromacs
.
org:grom
a
cs
commit
|
commitdiff
|
tree
2010-07-08
Dav
i
d van de
r
Sp
o
el
Added bondedtyp
e
s section t
o
rtp fil
e
s
.
It might be
.
.
.
commit
|
commitdiff
|
tree
2010-07-03
Dav
i
d van der Spoel
Fixed include statements such
t
h
a
t
d
ouble precis
i
on
.
.
.
commit
|
commitdiff
|
tree
2010-07-02
David van der
Spo
e
l
Merge bran
c
h
'master'
of git
.
gro
m
acs
.
o
rg:gromacs
commit
|
commitdiff
|
tree
2010-07-02
David van der
Spoel
Made removing pbc non-s
t
atic
.
This aff
e
cts many analysis
.
.
.
commit
|
commitdiff
|
tree
2010-07-02
David van der Spoel
Me
r
g
e
bran
c
h 'master' of git
.
g
romacs
.
org:gromacs
commit
|
commitdiff
|
tree
2010-07-02
David va
n
der
S
poel
Fixed bug http://
b
ugzil
l
a
.
gromacs
.
org/sho
w
_
bug
.
cgi
.
.
.
commit
|
commitdiff
|
tree
2010-06-30
David
v
an
d
e
r Spoel
Fixe
d
h
t
tp://bugzilla
.
gromacs
.
o
r
g/
s
h
o
w_bug
.
cgi
?
id=457
.
.
.
commit
|
commitdiff
|
tree
2010-06-30
David v
a
n d
e
r Spoel
M
e
r
ge branch
'master' of
g
i
t
.
grom
a
cs
.
org:gromacs
commit
|
commitdiff
|
tree
2010-06-30
David
van der Spoel
Fi
x
ed bug
in b-factors output b
y
g_confrm
s
.
They we
r
e
.
.
.
commit
|
commitdiff
|
tree
2010-06-27
D
avid van der
Spoel
Added miss
i
ng ar
g
umen
t
step to trotter_upd
a
t
e
.
How
.
.
.
commit
|
commitdiff
|
tree
2010-06-27
D
a
vid van
d
er Spoel
Me
r
ge branch
'
master' o
f
g
it
.
g
r
oma
c
s
.
org:
g
r
o
macs
commit
|
commitdiff
|
tree
2010-06-27
Dav
i
d van der Spo
e
l
U
p
dated CMak
e
Lists
.
txt in ngmx directory to exclude
.
.
.
commit
|
commitdiff
|
tree
2010-06-27
Dav
i
d van der Spoel
Fi
x
ed many is
s
u
es regarding to compila
t
ion
w
i
t
h
C+
.
.
.
commit
|
commitdiff
|
tree
2010-06-18
D
a
v
id
v
a
n de
r
S
p
o
e
l
Fixed
Makef
i
le
.
am leading to
w
a
r
nings
.
commit
|
commitdiff
|
tree
next