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2015-12-15	Teemu Murtola	Move gpu_utils etc. out of gmxlib	commit \| commitdiff \| tree
2015-12-13	Szilard Pall	OpenCL code cleanup	commit \| commitdiff \| tree
2015-12-12	Teemu Murtola	Create separate module for trajectory data	commit \| commitdiff \| tree
2015-12-12	Berk Hess	Removed unused mdrun option -dn	commit \| commitdiff \| tree
2015-12-12	Mark Abraham	Broke up copyright.*	commit \| commitdiff \| tree
2015-12-11	Teemu Murtola	Merge "Merge branch 'origin/release-5-1'"	commit \| commitdiff \| tree
2015-12-09	Robert McGibbon	Implement parse_digits_from_csv_string	commit \| commitdiff \| tree
2015-12-09	Mark Abraham	Update use of preprocessor in managing GPU support	commit \| commitdiff \| tree
2015-12-08	Roland Schulz	Remove old MSVC references	commit \| commitdiff \| tree
2015-12-07	Berk Hess	Moved pull params to mdtypes/pull-params.h	commit \| commitdiff \| tree
2015-12-02	Teemu Murtola	Split filenm.*	commit \| commitdiff \| tree
2015-12-02	Berk Hess	Refactored set_pbc_dd	commit \| commitdiff \| tree
2015-12-01	Erik Lindahl	Fixed null-dereferencing bug in vsites	commit \| commitdiff \| tree
2015-11-30	Magnus Lundborg	Fixed typos in output.	commit \| commitdiff \| tree
2015-11-30	Erik Lindahl	C++ classes for cpuid and hardware topology	commit \| commitdiff \| tree
2015-11-30	Teemu Murtola	Clean up some selection code	commit \| commitdiff \| tree
2015-11-23	Teemu Murtola	Move precision detection symbols to baseversion.*	commit \| commitdiff \| tree
2015-11-22	Mark Abraham	Fix generic group-scheme kernel table dereferencing	commit \| commitdiff \| tree
2015-11-21	David van der Spoel	Merged genborn.h from legacyheaders/types into mdlib...	commit \| commitdiff \| tree
2015-11-20	Mark Abraham	Remove ewcWAIT_GPU_NB_L_EST	commit \| commitdiff \| tree
2015-11-20	David van der Spoel	Moved legacyheaders/types/energy.h to mdtypes.	commit \| commitdiff \| tree
2015-11-19	Mark Abraham	Simplified init and mdrun code	commit \| commitdiff \| tree
2015-11-16	Mark Abraham	Fix use of #if vs #ifdef	commit \| commitdiff \| tree
2015-11-16	Mark Abraham	Fix AlignedAllocator with MSVC2015 debug mode	commit \| commitdiff \| tree
2015-11-16	Erik Lindahl	Remove unused code detected by PGI compiler	commit \| commitdiff \| tree
2015-11-16	Mark Abraham	Remove "support" for twin-range with VV integrators	commit \| commitdiff \| tree
2015-11-15	Teemu Murtola	Add EnumOption with support for proper enum types	commit \| commitdiff \| tree
2015-11-15	David van der Spoel	Merged legacyheaders/types/inputrec.h into mdtypes...	commit \| commitdiff \| tree
2015-11-15	Teemu Murtola	Fix reporting of unused cycle suppressions	commit \| commitdiff \| tree
2015-11-14	Mark Abraham	Fix walltime measurement with bgclang	commit \| commitdiff \| tree
2015-11-14	Teemu Murtola	Move network.h to gmxlib/	commit \| commitdiff \| tree
2015-11-14	Teemu Murtola	Move gmx_ga2la.h to domdec/	commit \| commitdiff \| tree
2015-11-13	David van der Spoel	Replaced atom_id by int.	commit \| commitdiff \| tree
2015-11-13	Teemu Murtola	Remove t_commrec dependency from cmdlineinit.cpp	commit \| commitdiff \| tree
2015-11-13	Teemu Murtola	Move nonbonded.h to gmxlib/nonbonded/	commit \| commitdiff \| tree
2015-11-13	Teemu Murtola	Let users build without compiler warnings	commit \| commitdiff \| tree
2015-11-13	Teemu Murtola	Merge types/nsgrid.h into nsgrid.h	commit \| commitdiff \| tree
2015-11-13	Mark Abraham	Update includesorter.py	commit \| commitdiff \| tree
2015-11-13	Teemu Murtola	Report unused cycle suppressions	commit \| commitdiff \| tree
2015-11-11	David van der Spoel	Moved inputrec.* from gmxlib and legacyheaders to mdtypes.	commit \| commitdiff \| tree
2015-11-11	Teemu Murtola	Remove build system for boost	commit \| commitdiff \| tree
2015-11-10	David van der Spoel	Removed legacyheaders/typedefs.h	commit \| commitdiff \| tree
2015-11-10	Teemu Murtola	Remove remaining boost dependencies	commit \| commitdiff \| tree
2015-11-06	Teemu Murtola	Move force.h and vsite.h into mdlib/	commit \| commitdiff \| tree
2015-11-05	Teemu Murtola	Move types/rgb.h to fileio/	commit \| commitdiff \| tree
2015-11-05	Vedran Miletić	Document gmx_repl_ex struct	commit \| commitdiff \| tree
2015-11-05	Mark Abraham	Handle another unused variable	commit \| commitdiff \| tree
2015-11-05	Erik Lindahl	Avoid __vectorcall with clang for reference build	commit \| commitdiff \| tree
2015-11-04	Teemu Murtola	Merge "Merge branch release-5-1"	commit \| commitdiff \| tree
2015-11-04	Mark Abraham	Permit matrix build with RelWithDebInfo set	commit \| commitdiff \| tree
2015-11-04	Mark Abraham	Fix icc 16 issues	commit \| commitdiff \| tree
2015-11-04	Mark Abraham	Stop moving from unique_ptr when copy elision works	commit \| commitdiff \| tree
2015-11-03	Teemu Murtola	Update build scripts to match releng refactoring	commit \| commitdiff \| tree
2015-11-03	David van der Spoel	Moved df_history utility routines from typedefs to...	commit \| commitdiff \| tree
2015-11-03	Mark Abraham	Quiet warnings with clang-3.7	commit \| commitdiff \| tree
2015-11-03	Berk Hess	Fix no wallcycle support	commit \| commitdiff \| tree
2015-11-03	James W. Barnett	Output replica exchange order description to debug	commit \| commitdiff \| tree
2015-11-02	Berk Hess	Fix intermolecular interactions with small mols	commit \| commitdiff \| tree
2015-11-02	Teemu Murtola	Replace boost::exception_ptr with std::exception_ptr	commit \| commitdiff \| tree
2015-11-02	Erik Lindahl	Enable 64-bit cycle counters on ARMV7a	commit \| commitdiff \| tree
2015-11-02	Szilard Pall	Fix signal type	commit \| commitdiff \| tree
2015-11-02	Erik Lindahl	Split SIMD implementations into 4 files	commit \| commitdiff \| tree
2015-11-02	Mark Abraham	Replace boost::shared_ptr with std::shared_ptr	commit \| commitdiff \| tree
2015-11-02	Erik Lindahl	Moved GMX_SIMD_* macros from ifdefs to values 0/1	commit \| commitdiff \| tree
2015-11-01	David van der Spoel	Replaced NOTSET from typedefs.h by local solutions.	commit \| commitdiff \| tree
2015-10-28	Mark Abraham	Use default alignment for OpenCL host buffer	commit \| commitdiff \| tree
2015-10-28	Teemu Murtola	Remove unused TrajectoryAnalysisModule code	commit \| commitdiff \| tree
2015-10-28	Mark Abraham	Separate wallcycle responsibilities	commit \| commitdiff \| tree
2015-10-25	Teemu Murtola	Fix missing help text for trajectory analysis tools	commit \| commitdiff \| tree
2015-10-24	Szilard Pall	Avoid using incompatible NVML version	commit \| commitdiff \| tree
2015-10-23	David van der Spoel	Removed energyhistory code from typedefs to a separate...	commit \| commitdiff \| tree
2015-10-23	Mark Abraham	Improve implementation of cycle subcounting	commit \| commitdiff \| tree
2015-10-23	Erik Lindahl	Added AlignedAllocator class	commit \| commitdiff \| tree
2015-10-22	Teemu Murtola	Additional normalization options for gmx rdf	commit \| commitdiff \| tree
2015-10-22	Szilard Pall	Quiet FindNVML	commit \| commitdiff \| tree
2015-10-22	Teemu Murtola	Use include_directories(SYSTEM ...) consistently	commit \| commitdiff \| tree
2015-10-22	Erik Lindahl	Merge "Merge release-5-0 into release-5-1" into release-5-1	commit \| commitdiff \| tree
2015-10-22	Teemu Murtola	Clean up and improve fatal error handling	commit \| commitdiff \| tree
2015-10-19	Mark Abraham	Fix cycle subcounters	commit \| commitdiff \| tree
2015-10-19	Teemu Murtola	Split EnumIntOption from StringOption	commit \| commitdiff \| tree
2015-10-18	Justin Lemkul	Removed dihedrals from GLY .rtp entry.	commit \| commitdiff \| tree
2015-10-16	Mark Abraham	Add Jenkins options matrix to source repo	commit \| commitdiff \| tree
2015-10-15	Szilárd Páll	Correct CUDA version comparisons	commit \| commitdiff \| tree
2015-10-14	Erik Lindahl	Another quote from Economist today	commit \| commitdiff \| tree
2015-10-14	Alfredo Metere	Fixed segfault in genconf utility	commit \| commitdiff \| tree
2015-10-13	Erik Lindahl	Moved nonbonded sources to C++	commit \| commitdiff \| tree
2015-10-13	Erik Lindahl	Moved last nbnxn_kernel sources to C++	commit \| commitdiff \| tree
2015-10-13	Teemu Murtola	Improve documentation and tests for refdata	commit \| commitdiff \| tree
2015-10-12	Michael Shirts	Fix for lack of COM removal for md-vv	commit \| commitdiff \| tree
2015-10-12	James W. Barnett	gmx wham: Use macros for units and conversions.	commit \| commitdiff \| tree
2015-10-12	Teemu Murtola	Hide implementation details from cmdlinerunner.h	commit \| commitdiff \| tree
2015-10-12	Carsten Kutzner	Described the computational electrophysiology .mdp...	commit \| commitdiff \| tree
2015-10-12	Teemu Murtola	Improve gmx sasa tests and clean up -or handling	commit \| commitdiff \| tree
2015-10-11	James W. Barnett	User guide: Update spelling, add some internal refs	commit \| commitdiff \| tree
2015-10-11	Teemu Murtola	Remove obsolete build scripts	commit \| commitdiff \| tree
2015-10-09	Mark Abraham	Remove CGLO_RERUNMD	commit \| commitdiff \| tree
2015-10-08	Teemu Murtola	Remove unused error handling code	commit \| commitdiff \| tree
2015-10-07	Carsten Kutzner	Extra options for computational electrophysiology.	commit \| commitdiff \| tree
2015-10-06	James W. Barnett	Update EI_MD to use EI_RANDOM. Also use EI_MD	commit \| commitdiff \| tree
2015-10-06	James W. Barnett	Note when pcoupl or tcoupl are auto set to no	commit \| commitdiff \| tree
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