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Test clang on ARM in nightly matrix
2017-11-07
Mark Abra
h
am
T
est cla
n
g on ARM in nightly matrix
commit
|
commitdiff
|
tree
2017-11-07
M
a
rk Abraham
I
mprove PME includes
commit
|
commitdiff
|
tree
2017-11-03
M
a
rk Abraham
Merge "Mer
g
e
b
ra
n
ch release-2016"
commit
|
commitdiff
|
tree
2017-11-02
M
ark Abraham
Merge branch r
e
leas
e
-2016
commit
|
commitdiff
|
tree
2017-11-01
Mark Abraham
Fix thread-MPI rank choi
c
e for orientatio
n
restra
i
nts
commit
|
commitdiff
|
tree
2017-11-01
Mark Abraham
Imp
r
ove handling of GPU
IDs
commit
|
commitdiff
|
tree
2017-10-31
Mar
k
Abraha
m
U
pd
a
te treatm
e
nt of G
P
U compa
t
ibility data structure
commit
|
commitdiff
|
tree
2017-10-30
Mark Abrah
a
m
Fix
and update hw_info
commit
|
commitdiff
|
tree
2017-10-27
Mark Abra
h
am
Fix hw detecti
o
n
more
commit
|
commitdiff
|
tree
2017-10-26
Mark Ab
r
ah
a
m
M
ake releas
e
m
atrix
w
ork again
commit
|
commitdiff
|
tree
2017-10-26
M
ark Abra
h
a
m
N
e
w quote
commit
|
commitdiff
|
tree
2017-10-25
Mark
A
braham
T
each the copyright checker a
b
out template
.
cpp
commit
|
commitdiff
|
tree
2017-10-20
Mark Abr
a
h
a
m
C
l
arify docs for Fm
a
x
i
n
EM
commit
|
commitdiff
|
tree
2017-10-20
M
a
rk
Abraham
Merge
branch release-
2
0
1
6
commit
|
commitdiff
|
tree
2017-10-16
Mark Abraham
Merge branch release-
2
016
commit
|
commitdiff
|
tree
2017-10-13
M
ark
Abraham
Update
t
e
sts for C++11 compile
r
a
n
d
s
tan
d
ard library
commit
|
commitdiff
|
tree
2017-10-13
Mark
A
braham
F
ix
cpuinfo on c
l
ang + non-x86
commit
|
commitdiff
|
tree
2017-10-11
M
a
rk Abraham
In
t
ro
d
uced he
a
der
for comm
u
nic
a
tio
n
to/from PME rank
s
commit
|
commitdiff
|
tree
2017-10-11
M
ark Abraham
C
leaned
u
p ewa
l
d
coe
f
f for PME-only ranks
commit
|
commitdiff
|
tree
2017-10-11
Mark Abraham
Use cla
n
g-5 in Jenkins
commit
|
commitdiff
|
tree
2017-10-07
Mark Abrah
a
m
T
e
l
l cppcheck
th
a
t
.
c
p
p and
.
cu files are c++
commit
|
commitdiff
|
tree
2017-10-05
Mark Abraham
C
o
n
t
inue rem
o
ving -nb gpu_cp
u
commit
|
commitdiff
|
tree
2017-10-04
Mark Abraha
m
Enable g
r
oup-schem
e
SIMD wi
t
h GM
X
_SIMD=AVX2_128
commit
|
commitdiff
|
tree
2017-10-03
Mark
A
brah
a
m
Introduce
and us
e
Align
e
dAllocati
o
nPolicy
commit
|
commitdiff
|
tree
2017-09-19
M
ark
A
b
raham
Upda
t
e testing matric
e
s to test
w
ith (la
t
est)
icc-18
commit
|
commitdiff
|
tree
2017-09-17
Ma
r
k Abraham
Merge branch release-2016
commit
|
commitdiff
|
tree
2017-09-15
M
ark Abraham
Express inten
t
of m
a
tr
i
x rel
e
ase buil
d
typ
e
s explicitly
commit
|
commitdiff
|
tree
2017-09-15
Mark Abraham
B
u
mped patch ver
s
ion
f
or next release
commit
|
commitdiff
|
tree
2017-09-15
Ma
r
k Abraham
Versi
o
n 2016
.
4
commit
|
commitdiff
|
tree
2017-09-14
Mark Abraham
F
o
rm taskassignment
modul
e
commit
|
commitdiff
|
tree
2017-09-14
Mark Abrah
a
m
Fix
c
ompat mod
u
le definition
commit
|
commitdiff
|
tree
2017-09-12
Mark
Ab
r
aha
m
Merge branch release-2016
commit
|
commitdiff
|
tree
2017-09-07
M
ark Abraham
Intro
d
uce type-safe GPU emulation va
r
iables
commit
|
commitdiff
|
tree
2017-09-07
Mar
k
Abraham
Enable g
r
o
up-sc
h
eme
S
IMD k
e
rnels on rece
n
t AVX extensions
commit
|
commitdiff
|
tree
2017-09-06
M
a
r
k Abraham
P
r
epare Verlet
s
cheme later in runner
commit
|
commitdiff
|
tree
2017-09-05
Mark Abraham
Fixes
f
or Solaris
commit
|
commitdiff
|
tree
2017-09-05
M
a
rk Abraham
Fix
use
o
f GPU i
n
formatio
n
for thread-MPI se
t
up
commit
|
commitdiff
|
tree
2017-09-03
M
ark
A
b
r
ah
a
m
Fix compi
l
er fl
a
gs for using MKL
commit
|
commitdiff
|
tree
2017-09-03
Ma
r
k Abr
a
h
am
Merge branch release-5-1 into release-2016
commit
|
commitdiff
|
tree
2017-08-25
Mar
k
A
braham
Fix
f
lat-bottomed
p
osit
i
on restrain
t
s
w
ith
m
u
l
t
iple
.
.
.
commit
|
commitdiff
|
tree
2017-08-23
Mark A
b
r
a
ham
St
o
p
ped c
h
eckpoin
t
in
f
l
u
e
n
c
i
ng parallelism setup
commit
|
commitdiff
|
tree
2017-08-22
Ma
r
k Abraham
Run G
P
U det
e
ction even for mdrun -nb c
p
u
commit
|
commitdiff
|
tree
2017-08-22
M
a
r
k Abrah
a
m
Fix
e
d thread-MPI
with no
n
-defau
l
t -npme
commit
|
commitdiff
|
tree
2017-08-22
Mark Abraham
Fix missing declaration of GMX_UNUS
E
D_VALUE
commit
|
commitdiff
|
tree
2017-08-22
Mark Abrah
a
m
M
e
r
g
e branch release-2016
commit
|
commitdiff
|
tree
2017-08-21
Mark Abraham
Moved increa
s
e_nst
l
ist() to
nbnxn_tunin
g
.
h
commit
|
commitdiff
|
tree
2017-08-21
Mark Abraham
Fix compilation issues with ARM SIMD
commit
|
commitdiff
|
tree
2017-08-17
Mark
A
b
raham
Replace con
s
is
t
ency checking
with assertion
commit
|
commitdiff
|
tree
2017-08-16
M
a
rk Abraham
P
a
rse user-supplied GPU t
a
sk assignment only when neede
d
commit
|
commitdiff
|
tree
2017-08-16
Mark
A
b
r
a
h
am
R
e
m
ov
e
d
u
plic
a
te GPU
n
on-usage hi
n
t
commit
|
commitdiff
|
tree
2017-08-16
Mark Abraham
Moved logg
i
ng f
u
nctionality into GPU usage report
commit
|
commitdiff
|
tree
2017-08-15
Ma
r
k Abrah
a
m
Merge bra
n
ch r
e
l
eas
e
-5-1 i
n
to release-2016
commit
|
commitdiff
|
tree
2017-08-15
M
a
rk Abraham
Fix
v
a
lue of
Ew
a
ld s
h
i
f
t
commit
|
commitdiff
|
tree
2017-08-10
Mark Ab
r
aham
Cl
a
r
i
fy data
f
low in
GPU
t
ask
a
s
si
g
nment
commit
|
commitdiff
|
tree
2017-08-07
Mark Ab
r
ah
a
m
Fix in
c
lude dependency for gete
n
v
commit
|
commitdiff
|
tree
2017-08-07
Mark
A
brah
a
m
Simplified handling
o
f G
P
U device IDs
commit
|
commitdiff
|
tree
2017-08-06
Mark Abraham
Simplify resource-d
i
visi
o
n effic
i
en
c
y
c
heck
commit
|
commitdiff
|
tree
2017-08-06
M
ar
k
Abraham
S
p
lit printhardwar
e
f
r
o
m detecthardware
commit
|
commitdiff
|
tree
2017-08-06
Mark Abraham
D
e
co
u
ple task
a
ssi
g
nment f
r
om task execution
commit
|
commitdiff
|
tree
2017-08-06
Mark Abraham
Removed unuse
d
h
ost-side al
l
oc
a
tion code
commit
|
commitdiff
|
tree
2017-08-04
Mark
Abraham
Stop usi
n
g
hwinf
o
_
g for reporting code
commit
|
commitdiff
|
tree
2017-08-03
Mark Abraham
Removed un
u
sed
i
nclude stat
e
m
e
nts
commit
|
commitdiff
|
tree
2017-08-01
Mark
A
b
raham
Int
r
oduced Mdr
u
nne
r
hig
h
-leve
l
class
commit
|
commitdiff
|
tree
2017-07-27
Mark Abraham
Enhance cmake and
rel
e
ng
h
a
ndl
i
n
g of GMX_USE_RD
T
SCP
commit
|
commitdiff
|
tree
2017-07-24
Mark
Abraham
Separated responsibili
t
y for consistency
checking
commit
|
commitdiff
|
tree
2017-07-24
Mark Abraham
Remove u
n
necessary GPU
checki
n
g
co
d
e
commit
|
commitdiff
|
tree
2017-07-20
Mark Abraham
Cleaned u
p
b
U
seGp
u
in runner
commit
|
commitdiff
|
tree
2017-07-20
Mar
k
Abraham
Sto
p
duplic
a
te prin
t
ing
of
det
e
c
t
ed
GPUs
commit
|
commitdiff
|
tree
2017-07-20
Mark Abraham
Fix use of GMX_SIMD in own-f
f
t
w
bu
i
ld
commit
|
commitdiff
|
tree
2017-07-19
M
ark
Abr
a
ham
Made post-sub
m
it config to test clang
+
open
m
p
.
commit
|
commitdiff
|
tree
2017-07-19
Mark Abraham
Improve
C
M
ake i
m
pl
e
mentatio
n
for GMX_S
I
MD
commit
|
commitdiff
|
tree
2017-07-18
Mark Abraham
Converte
d
some cons
t
pointers
i
n
to const
r
eferences
.
.
.
commit
|
commitdiff
|
tree
2017-07-18
Mark Abraha
m
Eliminated
p
i
ck_nbnxn_r
e
sources
commit
|
commitdiff
|
tree
2017-07-14
Mar
k
Abraham
Implem
e
nted gro
m
pp -po for o
p
tions-s
t
yle mdp han
d
ling
commit
|
commitdiff
|
tree
2017-07-14
Mark Abraham
C
l
ean up
c
mak
e
buil
d
host detectio
n
commit
|
commitdiff
|
tree
2017-07-13
Mark Abraham
Cl
e
an up gmx_mdr
u
n(
)
commit
|
commitdiff
|
tree
2017-07-13
Mark Abraham
C
l
eaned up mdrunner_start
_
t
h
reads
commit
|
commitdiff
|
tree
2017-07-13
M
ark Abraham
More
updates to
tes
t
ing m
a
trix
commit
|
commitdiff
|
tree
2017-07-07
Mark
A
braham
Refactor error h
a
n
dl
i
ng in init_gpu
commit
|
commitdiff
|
tree
2017-07-06
M
ark Abraham
Si
m
pl
i
f
y
gmx_gpu_o
p
t_t
commit
|
commitdiff
|
tree
2017-07-04
M
ark Abraham
Clean up pick_nbnxn_resou
r
c
e
s
commit
|
commitdiff
|
tree
2017-07-01
Mar
k
Abraham
Cleaned up GPU emulati
o
n
logic
commit
|
commitdiff
|
tree
2017-06-28
Mark
A
braham
Cl
e
aned up h
i
gh
-
level boolean var
i
able
n
aming
commit
|
commitdiff
|
tree
2017-06-28
Mark Ab
r
a
ham
F
i
x s
p
ecification for
gcc-
6
commit
|
commitdiff
|
tree
2017-06-28
Mark Abraham
M
erge branch r
e
lease-201
6
commit
|
commitdiff
|
tree
2017-06-27
Mark Abraham
Minor impr
o
vements to test configs
commit
|
commitdiff
|
tree
2017-06-22
Mark Abra
h
a
m
Consolidated logic for
c
hoosing number of thre
a
d-MPI
.
.
.
commit
|
commitdiff
|
tree
2017-06-22
Mark Ab
r
aham
Replace
m
isnamed nbnxn_gpu_accelera
t
ion_sup
p
orted
commit
|
commitdiff
|
tree
2017-06-22
Mark Abraham
C
o
n
solid
a
te and fix logic fo
r
m
d
run -nb and
-gpuid
commit
|
commitdiff
|
tree
2017-06-21
Mark Abraha
m
R
e
form ngpu variable
commit
|
commitdiff
|
tree
2017-06-21
M
ark Abra
h
a
m
R
e
move
bUser
S
et
G
p
u
Ids field
commit
|
commitdiff
|
tree
2017-06-14
Mark Abrah
a
m
Simplify repo
r
ting from i
n
it_gpu
commit
|
commitdiff
|
tree
2017-06-12
Mark
Abraham
Move gmx_pa
r
se_gpu_id out of checking f
u
nction
commit
|
commitdiff
|
tree
2017-05-31
Mark Abr
a
ham
New qu
o
te
commit
|
commitdiff
|
tree
2017-05-30
Ma
r
k Abraham
Fi
x
NVML er
r
or m
e
s
s
age
s
commit
|
commitdiff
|
tree
2017-05-27
M
a
rk
A
b
r
aham
Q
uotes fro
m
Gottingen wor
k
s
h
op
commit
|
commitdiff
|
tree
2017-05-26
Mark A
b
raham
Test
invsixthroot function a
s
i
n
tended
commit
|
commitdiff
|
tree
2017-05-15
Mark Abraham
Update
d
u
s
e of com
p
il
e
r specifier
s
in testing
commit
|
commitdiff
|
tree
2017-05-15
M
a
rk Abr
a
ham
Updated use of
g
c
c-5 specifiers
commit
|
commitdiff
|
tree
2017-05-15
Mark Abraham
Upda
t
e
c
l
a
ng stat
i
c anal
y
z
e
r slave to use version 4
commit
|
commitdiff
|
tree
next