Convert manual from LaTeX to Markup
commitdbe0a574f39854e6f1a0d2366bf442003ed159a1
authorPaul Bauer <paul.bauer.q@gmail.com>
Thu, 26 Oct 2017 13:47:03 +0000 (26 15:47 +0200)
committerMark Abraham <mark.j.abraham@gmail.com>
Sat, 21 Apr 2018 13:16:55 +0000 (21 15:16 +0200)
treea510f27391c3627bca73615e146ee81cdec5aa96
parent1982b675fa2bdfd7f97030a7a92467cf52c4e533
Convert manual from LaTeX to Markup

Manual has been automatically converted from *.tex to *.rst using
pandoc (after passing through the conversion script and some manual
hacking of the tex input files).

New rst formatted manual replaces the old one, with the pdf version
now also being generated from the information in the rst files.

Additionally, the eps image files have been converted to pdf and svg file
types to make it easier to automatically include them in the created
manual.

Proper change tracking depends on change
I3986740ab42a4054c4d0f9f67923ebf7a51320d9
and
Ice29bde4d9aa2ec99b416c668c21bef13fdd9d3e

Change-Id: I6702dde7be9cdd4199db2e6a8470698203449e31
39 files changed:
admin/builds/documentation.py
docs/CMakeLists.txt
docs/conf.py
docs/dev-manual/contribute.rst
docs/dev-manual/index.rst [copied from docs/index.rst with 50% similarity]
docs/dev-manual/overview.rst
docs/index.rst
docs/install-guide/index.rst
docs/manual/CMakeLists.txt
docs/manual/UseLATEX.cmake
docs/manual/unpubl.bib [deleted file]
docs/reference-manual-minimal/index.rst [new file with mode: 0644]
docs/reference-manual/algorithms.rst
docs/reference-manual/analysis.rst
docs/reference-manual/averages.rst
docs/reference-manual/definitions.rst
docs/reference-manual/details.rst
docs/reference-manual/file-formats.rst
docs/reference-manual/functions.rst
docs/reference-manual/index.rst
docs/reference-manual/introduction.rst
docs/reference-manual/plots/peregrine.png [new file with mode: 0644]
docs/reference-manual/plots/plotje.png [new file with mode: 0644]
docs/reference-manual/plots/xvgr.png [new file with mode: 0644]
docs/reference-manual/preface.rst
docs/reference-manual/references.rst
docs/reference-manual/run-parameters.rst
docs/reference-manual/special.rst
docs/reference-manual/topologies.rst
docs/release-notes/2018/major/features.rst
docs/user-guide-old/flow.rst [copied from docs/user-guide/flow.rst with 100% similarity]
docs/user-guide-old/index.rst [copied from docs/user-guide/index.rst with 83% similarity]
docs/user-guide/cmdline.rst
docs/user-guide/file-formats.rst [deleted file]
docs/user-guide/flow.rst
docs/user-guide/getting-started.rst
docs/user-guide/index.rst
docs/user-guide/mdrun-performance.rst
docs/user-guide/system-preparation.rst