1 .TH g_saltbr 1 "Fri 19 Apr 2013" "" "GROMACS suite, VERSION 4.5.7"
3 g_saltbr - computes salt bridges
9 .BI "\-s" " topol.tpr "
11 .BI "\-[no]version" ""
19 \&\fB g_saltbr\fR plots the distance between all combination of charged groups
20 \&as a function of time. The groups are combined in different ways.
21 \&A minimum distance can be given (i.e. a cut\-off), such that groups
22 \&that are never closer than that distance will not be plotted.
25 \&Output will be in a number of fixed filenames, \fB min\-min.xvg\fR, \fB plus\-min.xvg\fR
26 \&and \fB plus\-plus.xvg\fR, or files for every individual ion pair if the \fB \-sep\fR
27 \&option is selected. In this case, files are named as \fB sb\-(Resname)(Resnr)\-(Atomnr)\fR.
28 \&There may be \fB many\fR such files.
32 Trajectory: xtc trr trj gro g96 pdb cpt
34 .BI "\-s" " topol.tpr"
36 Run input file: tpr tpb tpa
40 Print help info and quit
42 .BI "\-[no]version" "no "
43 Print version info and quit
45 .BI "\-nice" " int" " 19"
48 .BI "\-b" " time" " 0 "
49 First frame (ps) to read from trajectory
51 .BI "\-e" " time" " 0 "
52 Last frame (ps) to read from trajectory
54 .BI "\-dt" " time" " 0 "
55 Only use frame when t MOD dt = first time (ps)
57 .BI "\-t" " real" " 1000 "
58 Groups that are never closer than this distance are not plotted
61 Use separate files for each interaction (may be MANY)
66 More information about \fBGROMACS\fR is available at <\fIhttp://www.gromacs.org/\fR>.