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36 * Note: this file was generated by the GROMACS sse4_1_double kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
47 #include "kernelutil_x86_sse4_1_double.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecNone_VdwLJ_GeomP1P1_VF_sse4_1_double
51 * Electrostatics interaction: None
52 * VdW interaction: LennardJones
53 * Geometry: Particle-Particle
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecNone_VdwLJ_GeomP1P1_VF_sse4_1_double
58 (t_nblist
* gmx_restrict nlist
,
59 rvec
* gmx_restrict xx
,
60 rvec
* gmx_restrict ff
,
61 struct t_forcerec
* gmx_restrict fr
,
62 t_mdatoms
* gmx_restrict mdatoms
,
63 nb_kernel_data_t gmx_unused
* gmx_restrict kernel_data
,
64 t_nrnb
* gmx_restrict nrnb
)
66 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
67 * just 0 for non-waters.
68 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
69 * jnr indices corresponding to data put in the four positions in the SIMD register.
71 int i_shift_offset
,i_coord_offset
,outeriter
,inneriter
;
72 int j_index_start
,j_index_end
,jidx
,nri
,inr
,ggid
,iidx
;
74 int j_coord_offsetA
,j_coord_offsetB
;
75 int *iinr
,*jindex
,*jjnr
,*shiftidx
,*gid
;
77 real
*shiftvec
,*fshift
,*x
,*f
;
78 __m128d tx
,ty
,tz
,fscal
,rcutoff
,rcutoff2
,jidxall
;
80 __m128d ix0
,iy0
,iz0
,fix0
,fiy0
,fiz0
,iq0
,isai0
;
81 int vdwjidx0A
,vdwjidx0B
;
82 __m128d jx0
,jy0
,jz0
,fjx0
,fjy0
,fjz0
,jq0
,isaj0
;
83 __m128d dx00
,dy00
,dz00
,rsq00
,rinv00
,rinvsq00
,r00
,qq00
,c6_00
,c12_00
;
85 __m128d rinvsix
,rvdw
,vvdw
,vvdw6
,vvdw12
,fvdw
,fvdw6
,fvdw12
,vvdwsum
,sh_vdw_invrcut6
;
88 __m128d one_sixth
= _mm_set1_pd(1.0/6.0);
89 __m128d one_twelfth
= _mm_set1_pd(1.0/12.0);
90 __m128d dummy_mask
,cutoff_mask
;
91 __m128d signbit
= gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
92 __m128d one
= _mm_set1_pd(1.0);
93 __m128d two
= _mm_set1_pd(2.0);
99 jindex
= nlist
->jindex
;
101 shiftidx
= nlist
->shift
;
103 shiftvec
= fr
->shift_vec
[0];
104 fshift
= fr
->fshift
[0];
105 nvdwtype
= fr
->ntype
;
107 vdwtype
= mdatoms
->typeA
;
109 /* Avoid stupid compiler warnings */
117 /* Start outer loop over neighborlists */
118 for(iidx
=0; iidx
<nri
; iidx
++)
120 /* Load shift vector for this list */
121 i_shift_offset
= DIM
*shiftidx
[iidx
];
123 /* Load limits for loop over neighbors */
124 j_index_start
= jindex
[iidx
];
125 j_index_end
= jindex
[iidx
+1];
127 /* Get outer coordinate index */
129 i_coord_offset
= DIM
*inr
;
131 /* Load i particle coords and add shift vector */
132 gmx_mm_load_shift_and_1rvec_broadcast_pd(shiftvec
+i_shift_offset
,x
+i_coord_offset
,&ix0
,&iy0
,&iz0
);
134 fix0
= _mm_setzero_pd();
135 fiy0
= _mm_setzero_pd();
136 fiz0
= _mm_setzero_pd();
138 /* Load parameters for i particles */
139 vdwioffset0
= 2*nvdwtype
*vdwtype
[inr
+0];
141 /* Reset potential sums */
142 vvdwsum
= _mm_setzero_pd();
144 /* Start inner kernel loop */
145 for(jidx
=j_index_start
; jidx
<j_index_end
-1; jidx
+=2)
148 /* Get j neighbor index, and coordinate index */
151 j_coord_offsetA
= DIM
*jnrA
;
152 j_coord_offsetB
= DIM
*jnrB
;
154 /* load j atom coordinates */
155 gmx_mm_load_1rvec_2ptr_swizzle_pd(x
+j_coord_offsetA
,x
+j_coord_offsetB
,
158 /* Calculate displacement vector */
159 dx00
= _mm_sub_pd(ix0
,jx0
);
160 dy00
= _mm_sub_pd(iy0
,jy0
);
161 dz00
= _mm_sub_pd(iz0
,jz0
);
163 /* Calculate squared distance and things based on it */
164 rsq00
= gmx_mm_calc_rsq_pd(dx00
,dy00
,dz00
);
166 rinvsq00
= sse41_inv_d(rsq00
);
168 /* Load parameters for j particles */
169 vdwjidx0A
= 2*vdwtype
[jnrA
+0];
170 vdwjidx0B
= 2*vdwtype
[jnrB
+0];
172 /**************************
173 * CALCULATE INTERACTIONS *
174 **************************/
176 /* Compute parameters for interactions between i and j atoms */
177 gmx_mm_load_2pair_swizzle_pd(vdwparam
+vdwioffset0
+vdwjidx0A
,
178 vdwparam
+vdwioffset0
+vdwjidx0B
,&c6_00
,&c12_00
);
180 /* LENNARD-JONES DISPERSION/REPULSION */
182 rinvsix
= _mm_mul_pd(_mm_mul_pd(rinvsq00
,rinvsq00
),rinvsq00
);
183 vvdw6
= _mm_mul_pd(c6_00
,rinvsix
);
184 vvdw12
= _mm_mul_pd(c12_00
,_mm_mul_pd(rinvsix
,rinvsix
));
185 vvdw
= _mm_sub_pd( _mm_mul_pd(vvdw12
,one_twelfth
) , _mm_mul_pd(vvdw6
,one_sixth
) );
186 fvdw
= _mm_mul_pd(_mm_sub_pd(vvdw12
,vvdw6
),rinvsq00
);
188 /* Update potential sum for this i atom from the interaction with this j atom. */
189 vvdwsum
= _mm_add_pd(vvdwsum
,vvdw
);
193 /* Calculate temporary vectorial force */
194 tx
= _mm_mul_pd(fscal
,dx00
);
195 ty
= _mm_mul_pd(fscal
,dy00
);
196 tz
= _mm_mul_pd(fscal
,dz00
);
198 /* Update vectorial force */
199 fix0
= _mm_add_pd(fix0
,tx
);
200 fiy0
= _mm_add_pd(fiy0
,ty
);
201 fiz0
= _mm_add_pd(fiz0
,tz
);
203 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f
+j_coord_offsetA
,f
+j_coord_offsetB
,tx
,ty
,tz
);
205 /* Inner loop uses 32 flops */
212 j_coord_offsetA
= DIM
*jnrA
;
214 /* load j atom coordinates */
215 gmx_mm_load_1rvec_1ptr_swizzle_pd(x
+j_coord_offsetA
,
218 /* Calculate displacement vector */
219 dx00
= _mm_sub_pd(ix0
,jx0
);
220 dy00
= _mm_sub_pd(iy0
,jy0
);
221 dz00
= _mm_sub_pd(iz0
,jz0
);
223 /* Calculate squared distance and things based on it */
224 rsq00
= gmx_mm_calc_rsq_pd(dx00
,dy00
,dz00
);
226 rinvsq00
= sse41_inv_d(rsq00
);
228 /* Load parameters for j particles */
229 vdwjidx0A
= 2*vdwtype
[jnrA
+0];
231 /**************************
232 * CALCULATE INTERACTIONS *
233 **************************/
235 /* Compute parameters for interactions between i and j atoms */
236 gmx_mm_load_1pair_swizzle_pd(vdwparam
+vdwioffset0
+vdwjidx0A
,&c6_00
,&c12_00
);
238 /* LENNARD-JONES DISPERSION/REPULSION */
240 rinvsix
= _mm_mul_pd(_mm_mul_pd(rinvsq00
,rinvsq00
),rinvsq00
);
241 vvdw6
= _mm_mul_pd(c6_00
,rinvsix
);
242 vvdw12
= _mm_mul_pd(c12_00
,_mm_mul_pd(rinvsix
,rinvsix
));
243 vvdw
= _mm_sub_pd( _mm_mul_pd(vvdw12
,one_twelfth
) , _mm_mul_pd(vvdw6
,one_sixth
) );
244 fvdw
= _mm_mul_pd(_mm_sub_pd(vvdw12
,vvdw6
),rinvsq00
);
246 /* Update potential sum for this i atom from the interaction with this j atom. */
247 vvdw
= _mm_unpacklo_pd(vvdw
,_mm_setzero_pd());
248 vvdwsum
= _mm_add_pd(vvdwsum
,vvdw
);
252 fscal
= _mm_unpacklo_pd(fscal
,_mm_setzero_pd());
254 /* Calculate temporary vectorial force */
255 tx
= _mm_mul_pd(fscal
,dx00
);
256 ty
= _mm_mul_pd(fscal
,dy00
);
257 tz
= _mm_mul_pd(fscal
,dz00
);
259 /* Update vectorial force */
260 fix0
= _mm_add_pd(fix0
,tx
);
261 fiy0
= _mm_add_pd(fiy0
,ty
);
262 fiz0
= _mm_add_pd(fiz0
,tz
);
264 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f
+j_coord_offsetA
,tx
,ty
,tz
);
266 /* Inner loop uses 32 flops */
269 /* End of innermost loop */
271 gmx_mm_update_iforce_1atom_swizzle_pd(fix0
,fiy0
,fiz0
,
272 f
+i_coord_offset
,fshift
+i_shift_offset
);
275 /* Update potential energies */
276 gmx_mm_update_1pot_pd(vvdwsum
,kernel_data
->energygrp_vdw
+ggid
);
278 /* Increment number of inner iterations */
279 inneriter
+= j_index_end
- j_index_start
;
281 /* Outer loop uses 7 flops */
284 /* Increment number of outer iterations */
287 /* Update outer/inner flops */
289 inc_nrnb(nrnb
,eNR_NBKERNEL_VDW_VF
,outeriter
*7 + inneriter
*32);
292 * Gromacs nonbonded kernel: nb_kernel_ElecNone_VdwLJ_GeomP1P1_F_sse4_1_double
293 * Electrostatics interaction: None
294 * VdW interaction: LennardJones
295 * Geometry: Particle-Particle
296 * Calculate force/pot: Force
299 nb_kernel_ElecNone_VdwLJ_GeomP1P1_F_sse4_1_double
300 (t_nblist
* gmx_restrict nlist
,
301 rvec
* gmx_restrict xx
,
302 rvec
* gmx_restrict ff
,
303 struct t_forcerec
* gmx_restrict fr
,
304 t_mdatoms
* gmx_restrict mdatoms
,
305 nb_kernel_data_t gmx_unused
* gmx_restrict kernel_data
,
306 t_nrnb
* gmx_restrict nrnb
)
308 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
309 * just 0 for non-waters.
310 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
311 * jnr indices corresponding to data put in the four positions in the SIMD register.
313 int i_shift_offset
,i_coord_offset
,outeriter
,inneriter
;
314 int j_index_start
,j_index_end
,jidx
,nri
,inr
,ggid
,iidx
;
316 int j_coord_offsetA
,j_coord_offsetB
;
317 int *iinr
,*jindex
,*jjnr
,*shiftidx
,*gid
;
319 real
*shiftvec
,*fshift
,*x
,*f
;
320 __m128d tx
,ty
,tz
,fscal
,rcutoff
,rcutoff2
,jidxall
;
322 __m128d ix0
,iy0
,iz0
,fix0
,fiy0
,fiz0
,iq0
,isai0
;
323 int vdwjidx0A
,vdwjidx0B
;
324 __m128d jx0
,jy0
,jz0
,fjx0
,fjy0
,fjz0
,jq0
,isaj0
;
325 __m128d dx00
,dy00
,dz00
,rsq00
,rinv00
,rinvsq00
,r00
,qq00
,c6_00
,c12_00
;
327 __m128d rinvsix
,rvdw
,vvdw
,vvdw6
,vvdw12
,fvdw
,fvdw6
,fvdw12
,vvdwsum
,sh_vdw_invrcut6
;
330 __m128d one_sixth
= _mm_set1_pd(1.0/6.0);
331 __m128d one_twelfth
= _mm_set1_pd(1.0/12.0);
332 __m128d dummy_mask
,cutoff_mask
;
333 __m128d signbit
= gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
334 __m128d one
= _mm_set1_pd(1.0);
335 __m128d two
= _mm_set1_pd(2.0);
341 jindex
= nlist
->jindex
;
343 shiftidx
= nlist
->shift
;
345 shiftvec
= fr
->shift_vec
[0];
346 fshift
= fr
->fshift
[0];
347 nvdwtype
= fr
->ntype
;
349 vdwtype
= mdatoms
->typeA
;
351 /* Avoid stupid compiler warnings */
359 /* Start outer loop over neighborlists */
360 for(iidx
=0; iidx
<nri
; iidx
++)
362 /* Load shift vector for this list */
363 i_shift_offset
= DIM
*shiftidx
[iidx
];
365 /* Load limits for loop over neighbors */
366 j_index_start
= jindex
[iidx
];
367 j_index_end
= jindex
[iidx
+1];
369 /* Get outer coordinate index */
371 i_coord_offset
= DIM
*inr
;
373 /* Load i particle coords and add shift vector */
374 gmx_mm_load_shift_and_1rvec_broadcast_pd(shiftvec
+i_shift_offset
,x
+i_coord_offset
,&ix0
,&iy0
,&iz0
);
376 fix0
= _mm_setzero_pd();
377 fiy0
= _mm_setzero_pd();
378 fiz0
= _mm_setzero_pd();
380 /* Load parameters for i particles */
381 vdwioffset0
= 2*nvdwtype
*vdwtype
[inr
+0];
383 /* Start inner kernel loop */
384 for(jidx
=j_index_start
; jidx
<j_index_end
-1; jidx
+=2)
387 /* Get j neighbor index, and coordinate index */
390 j_coord_offsetA
= DIM
*jnrA
;
391 j_coord_offsetB
= DIM
*jnrB
;
393 /* load j atom coordinates */
394 gmx_mm_load_1rvec_2ptr_swizzle_pd(x
+j_coord_offsetA
,x
+j_coord_offsetB
,
397 /* Calculate displacement vector */
398 dx00
= _mm_sub_pd(ix0
,jx0
);
399 dy00
= _mm_sub_pd(iy0
,jy0
);
400 dz00
= _mm_sub_pd(iz0
,jz0
);
402 /* Calculate squared distance and things based on it */
403 rsq00
= gmx_mm_calc_rsq_pd(dx00
,dy00
,dz00
);
405 rinvsq00
= sse41_inv_d(rsq00
);
407 /* Load parameters for j particles */
408 vdwjidx0A
= 2*vdwtype
[jnrA
+0];
409 vdwjidx0B
= 2*vdwtype
[jnrB
+0];
411 /**************************
412 * CALCULATE INTERACTIONS *
413 **************************/
415 /* Compute parameters for interactions between i and j atoms */
416 gmx_mm_load_2pair_swizzle_pd(vdwparam
+vdwioffset0
+vdwjidx0A
,
417 vdwparam
+vdwioffset0
+vdwjidx0B
,&c6_00
,&c12_00
);
419 /* LENNARD-JONES DISPERSION/REPULSION */
421 rinvsix
= _mm_mul_pd(_mm_mul_pd(rinvsq00
,rinvsq00
),rinvsq00
);
422 fvdw
= _mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00
,rinvsix
),c6_00
),_mm_mul_pd(rinvsix
,rinvsq00
));
426 /* Calculate temporary vectorial force */
427 tx
= _mm_mul_pd(fscal
,dx00
);
428 ty
= _mm_mul_pd(fscal
,dy00
);
429 tz
= _mm_mul_pd(fscal
,dz00
);
431 /* Update vectorial force */
432 fix0
= _mm_add_pd(fix0
,tx
);
433 fiy0
= _mm_add_pd(fiy0
,ty
);
434 fiz0
= _mm_add_pd(fiz0
,tz
);
436 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f
+j_coord_offsetA
,f
+j_coord_offsetB
,tx
,ty
,tz
);
438 /* Inner loop uses 27 flops */
445 j_coord_offsetA
= DIM
*jnrA
;
447 /* load j atom coordinates */
448 gmx_mm_load_1rvec_1ptr_swizzle_pd(x
+j_coord_offsetA
,
451 /* Calculate displacement vector */
452 dx00
= _mm_sub_pd(ix0
,jx0
);
453 dy00
= _mm_sub_pd(iy0
,jy0
);
454 dz00
= _mm_sub_pd(iz0
,jz0
);
456 /* Calculate squared distance and things based on it */
457 rsq00
= gmx_mm_calc_rsq_pd(dx00
,dy00
,dz00
);
459 rinvsq00
= sse41_inv_d(rsq00
);
461 /* Load parameters for j particles */
462 vdwjidx0A
= 2*vdwtype
[jnrA
+0];
464 /**************************
465 * CALCULATE INTERACTIONS *
466 **************************/
468 /* Compute parameters for interactions between i and j atoms */
469 gmx_mm_load_1pair_swizzle_pd(vdwparam
+vdwioffset0
+vdwjidx0A
,&c6_00
,&c12_00
);
471 /* LENNARD-JONES DISPERSION/REPULSION */
473 rinvsix
= _mm_mul_pd(_mm_mul_pd(rinvsq00
,rinvsq00
),rinvsq00
);
474 fvdw
= _mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00
,rinvsix
),c6_00
),_mm_mul_pd(rinvsix
,rinvsq00
));
478 fscal
= _mm_unpacklo_pd(fscal
,_mm_setzero_pd());
480 /* Calculate temporary vectorial force */
481 tx
= _mm_mul_pd(fscal
,dx00
);
482 ty
= _mm_mul_pd(fscal
,dy00
);
483 tz
= _mm_mul_pd(fscal
,dz00
);
485 /* Update vectorial force */
486 fix0
= _mm_add_pd(fix0
,tx
);
487 fiy0
= _mm_add_pd(fiy0
,ty
);
488 fiz0
= _mm_add_pd(fiz0
,tz
);
490 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f
+j_coord_offsetA
,tx
,ty
,tz
);
492 /* Inner loop uses 27 flops */
495 /* End of innermost loop */
497 gmx_mm_update_iforce_1atom_swizzle_pd(fix0
,fiy0
,fiz0
,
498 f
+i_coord_offset
,fshift
+i_shift_offset
);
500 /* Increment number of inner iterations */
501 inneriter
+= j_index_end
- j_index_start
;
503 /* Outer loop uses 6 flops */
506 /* Increment number of outer iterations */
509 /* Update outer/inner flops */
511 inc_nrnb(nrnb
,eNR_NBKERNEL_VDW_F
,outeriter
*6 + inneriter
*27);