Add function to get residue start and end
[gromacs.git] / src / gromacs / nbnxm / pairlistparams.cpp
blob26f6fec3f9b210be259a9fd043f2a53a32e34ffb
1 /*
2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 2019, by the GROMACS development team, led by
5 * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
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36 /*! \internal \file
37 * \brief
38 * Implements the PairlistParams constructor
40 * \author Berk Hess <hess@kth.se>
41 * \ingroup module_nbnxm
44 #include "gmxpre.h"
46 #include "pairlistparams.h"
48 #include "gromacs/nbnxm/nbnxm.h"
49 #include "gromacs/utility/gmxassert.h"
51 #include "nbnxm_geometry.h"
54 PairlistParams::PairlistParams(const Nbnxm::KernelType kernelType,
55 const bool haveFep,
56 const real rlist,
57 const bool haveMultipleDomains) :
58 haveFep(haveFep),
59 rlistOuter(rlist),
60 rlistInner(rlist),
61 haveMultipleDomains(haveMultipleDomains),
62 useDynamicPruning(false),
63 nstlistPrune(-1),
64 numRollingPruningParts(1),
65 lifetime(-1)
67 if (!Nbnxm::kernelTypeUsesSimplePairlist(kernelType))
69 pairlistType = PairlistType::HierarchicalNxN;
71 else
73 switch (Nbnxm::JClusterSizePerKernelType[kernelType])
75 case 2: pairlistType = PairlistType::Simple4x2; break;
76 case 4: pairlistType = PairlistType::Simple4x4; break;
77 case 8: pairlistType = PairlistType::Simple4x8; break;
78 default: GMX_RELEASE_ASSERT(false, "Kernel type does not have a pairlist type");