1 .TH gmxdump 1 "Mon 4 Apr 2011" "" "GROMACS suite, VERSION 4.5.4-dev-20110404-bc5695c"
3 gmxdump - makes binary files human readable
5 .B VERSION 4.5.4-dev-20110404-bc5695c
8 .BI "\-s" " topol.tpr "
10 .BI "\-e" " ener.edr "
11 .BI "\-cp" " state.cpt "
12 .BI "\-p" " topol.top "
13 .BI "\-mtx" " hessian.mtx "
14 .BI "\-om" " grompp.mdp "
16 .BI "\-[no]version" ""
21 \&\fB gmxdump\fR reads a run input file (\fB .tpa\fR/\fB .tpr\fR/\fB .tpb\fR),
22 \&a trajectory (\fB .trj\fR/\fB .trr\fR/\fB .xtc\fR), an energy
23 \&file (\fB .ene\fR/\fB .edr\fR), or a checkpoint file (\fB .cpt\fR)
24 \&and prints that to standard output in a readable format.
25 \&This program is essential for checking your run input file in case of
29 \&The program can also preprocess a topology to help finding problems.
30 \&Note that currently setting \fB GMXLIB\fR is the only way to customize
31 \&directories used for searching include files.
33 .BI "\-s" " topol.tpr"
35 Run input file: tpr tpb tpa
39 Trajectory: xtc trr trj gro g96 pdb cpt
45 .BI "\-cp" " state.cpt"
49 .BI "\-p" " topol.top"
53 .BI "\-mtx" " hessian.mtx"
57 .BI "\-om" " grompp.mdp"
59 grompp input file with MD parameters
63 Print help info and quit
65 .BI "\-[no]version" "no "
66 Print version info and quit
68 .BI "\-nice" " int" " 0"
72 Show index numbers in output (leaving them out makes comparison easier, but creates a useless topology)
75 List the atoms and bonded interactions for the whole system instead of for each molecule type
80 More information about \fBGROMACS\fR is available at <\fIhttp://www.gromacs.org/\fR>.