1 .TH g_rama 1 "Mon 4 Apr 2011" "" "GROMACS suite, VERSION 4.5.4-dev-20110404-bc5695c"
3 g_rama - computes Ramachandran plots
5 .B VERSION 4.5.4-dev-20110404-bc5695c
9 .BI "\-s" " topol.tpr "
10 .BI "\-o" " rama.xvg "
12 .BI "\-[no]version" ""
20 \&\fB g_rama\fR selects the phi/psi dihedral combinations from your topology file
21 \&and computes these as a function of time.
22 \&Using simple Unix tools such as \fI grep\fR you can select out
27 Trajectory: xtc trr trj gro g96 pdb cpt
29 .BI "\-s" " topol.tpr"
31 Run input file: tpr tpb tpa
39 Print help info and quit
41 .BI "\-[no]version" "no "
42 Print version info and quit
44 .BI "\-nice" " int" " 19"
47 .BI "\-b" " time" " 0 "
48 First frame (ps) to read from trajectory
50 .BI "\-e" " time" " 0 "
51 Last frame (ps) to read from trajectory
53 .BI "\-dt" " time" " 0 "
54 Only use frame when t MOD dt = first time (ps)
57 View output \fB .xvg\fR, \fB .xpm\fR, \fB .eps\fR and \fB .pdb\fR files
59 .BI "\-xvg" " enum" " xmgrace"
60 xvg plot formatting: \fB xmgrace\fR, \fB xmgr\fR or \fB none\fR
65 More information about \fBGROMACS\fR is available at <\fIhttp://www.gromacs.org/\fR>.