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46 gmx_anadock(int argc
, char *argv
[]);
49 gmx_analyze(int argc
, char *argv
[]);
52 gmx_anaeig(int argc
, char *argv
[]);
55 gmx_g_angle(int argc
, char *argv
[]);
58 gmx_bar(int argc
, char *argv
[]);
61 gmx_bundle(int argc
, char *argv
[]);
64 gmx_chi(int argc
, char *argv
[]);
67 gmx_cluster(int argc
, char *argv
[]);
70 gmx_confrms(int argc
, char *argv
[]);
73 gmx_covar(int argc
, char *argv
[]);
76 gmx_current(int argc
, char *argv
[]);
79 gmx_density(int argc
, char *argv
[]);
82 gmx_densmap(int argc
, char *argv
[]);
85 gmx_densorder(int argc
, char *argv
[]);
88 gmx_dielectric(int argc
, char *argv
[]);
91 gmx_dipoles(int argc
, char *argv
[]);
94 gmx_disre(int argc
, char *argv
[]);
97 gmx_do_dssp(int argc
, char *argv
[]);
100 gmx_dos(int argc
, char *argv
[]);
103 gmx_dyecoupl(int argc
, char *argv
[]);
106 gmx_dyndom(int argc
, char *argv
[]);
109 gmx_editconf(int argc
, char *argv
[]);
112 gmx_eneconv(int argc
, char *argv
[]);
115 gmx_enemat(int argc
, char *argv
[]);
118 gmx_energy(int argc
, char *argv
[]);
121 gmx_lie(int argc
, char *argv
[]);
124 gmx_filter(int argc
, char *argv
[]);
127 gmx_genion(int argc
, char *argv
[]);
130 gmx_genpr(int argc
, char *argv
[]);
133 gmx_gyrate(int argc
, char *argv
[]);
136 gmx_h2order(int argc
, char *argv
[]);
139 gmx_hbond(int argc
, char *argv
[]);
142 gmx_helix(int argc
, char *argv
[]);
145 gmx_helixorient(int argc
, char *argv
[]);
148 gmx_hydorder(int argc
, char *argv
[]);
151 gmx_make_edi(int argc
, char *argv
[]);
154 gmx_make_ndx(int argc
, char *argv
[]);
157 gmx_mindist(int argc
, char *argv
[]);
160 gmx_mk_angndx(int argc
, char *argv
[]);
163 gmx_msd(int argc
, char *argv
[]);
166 gmx_morph(int argc
, char *argv
[]);
169 gmx_nmeig(int argc
, char *argv
[]);
172 gmx_nmens(int argc
, char *argv
[]);
175 gmx_nmtraj(int argc
, char *argv
[]);
178 gmx_order(int argc
, char *argv
[]);
181 gmx_polystat(int argc
, char *argv
[]);
184 gmx_potential(int argc
, char *argv
[]);
187 gmx_principal(int argc
, char *argv
[]);
190 gmx_rama(int argc
, char *argv
[]);
193 gmx_rotmat(int argc
, char *argv
[]);
196 gmx_rms(int argc
, char *argv
[]);
199 gmx_rmsdist(int argc
, char *argv
[]);
202 gmx_rmsf(int argc
, char *argv
[]);
205 gmx_rotacf(int argc
, char *argv
[]);
208 gmx_saltbr(int argc
, char *argv
[]);
211 gmx_sham(int argc
, char *argv
[]);
214 gmx_sigeps(int argc
, char *argv
[]);
217 gmx_sorient(int argc
, char *argv
[]);
220 gmx_spol(int argc
, char *argv
[]);
223 gmx_spatial(int argc
, char *argv
[]);
226 gmx_tcaf(int argc
, char *argv
[]);
229 gmx_traj(int argc
, char *argv
[]);
232 gmx_trjcat(int argc
, char *argv
[]);
235 gmx_trjconv(int argc
, char *argv
[]);
238 gmx_trjorder(int argc
, char *argv
[]);
241 gmx_tune_pme(int argc
, char *argv
[]);
244 gmx_velacc(int argc
, char *argv
[]);
247 gmx_clustsize(int argc
, char *argv
[]);
250 gmx_mdmat(int argc
, char *argv
[]);
253 gmx_vanhove(int argc
, char *argv
[]);
256 gmx_wham(int argc
, char *argv
[]);
259 gmx_wheel(int argc
, char *argv
[]);
262 gmx_xpm2ps(int argc
, char *argv
[]);
265 gmx_membed(int argc
, char *argv
[]);
268 gmx_pme_error(int argc
, char *argv
[]);
271 gmx_sans(int argc
, char *argv
[]);
274 gmx_saxs(int argc
, char *argv
[]);