Fix final configuration writing for modular simulator
[gromacs.git] / admin / reformat_all.sh
blob5748c91cc5af859330ed49b5ebd29a975da45f07
1 #!/bin/bash
3 # This file is part of the GROMACS molecular simulation package.
5 # Copyright (c) 2014,2015,2016,2017,2019, by the GROMACS development team, led by
6 # Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
7 # and including many others, as listed in the AUTHORS file in the
8 # top-level source directory and at http://www.gromacs.org.
10 # GROMACS is free software; you can redistribute it and/or
11 # modify it under the terms of the GNU Lesser General Public License
12 # as published by the Free Software Foundation; either version 2.1
13 # of the License, or (at your option) any later version.
15 # GROMACS is distributed in the hope that it will be useful,
16 # but WITHOUT ANY WARRANTY; without even the implied warranty of
17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
18 # Lesser General Public License for more details.
20 # You should have received a copy of the GNU Lesser General Public
21 # License along with GROMACS; if not, see
22 # http://www.gnu.org/licenses, or write to the Free Software Foundation,
23 # Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
25 # If you want to redistribute modifications to GROMACS, please
26 # consider that scientific software is very special. Version
27 # control is crucial - bugs must be traceable. We will be happy to
28 # consider code for inclusion in the official distribution, but
29 # derived work must not be called official GROMACS. Details are found
30 # in the README & COPYING files - if they are missing, get the
31 # official version at http://www.gromacs.org.
33 # To help us fund GROMACS development, we humbly ask that you cite
34 # the research papers on the package. Check out http://www.gromacs.org.
36 # This script runs uncrustify, clang-format, copyright header checks, or include sorter on
37 # all applicable files in the source tree.
39 # See `reformat_all.sh -h` for a brief usage, and docs/dev-manual/code-formatting.rst
40 # for more details (docs/dev-manual/gmxtree.rst for include sorter).
42 function usage() {
43 echo "usage: reformat_all.sh [-f|--force]"
44 echo " [--filter=(complete_formatting|clangformat|uncrustify|copyright|includesort)]"
45 echo " [--pattern=<pattern>] [<action>] [-B=<build dir>]"
46 echo "<action>: (list-files|uncrustify|clang-format*|copyright|includesort) (*=default)"
49 filter=default
50 force=
51 patterns=()
52 action=clang-format
53 for arg in "$@" ; do
54 if [[ "$arg" == "list-files" || "$arg" == "uncrustify" ||
55 "$arg" == "clang-format" || "$arg" == "copyright" ||
56 "$arg" == "includesort" ]] ; then
57 action=$arg
58 elif [[ "$arg" == --filter=* ]] ; then
59 filter=${arg#--filter=}
60 elif [[ "$arg" == --pattern=* ]] ; then
61 patterns[${#patterns[@]}]=${arg#--pattern=}
62 elif [[ "$arg" == -B=* ]] ; then
63 builddir=${arg#-B=}
64 elif [[ "$arg" == "-f" || "$arg" == "--force" ]] ; then
65 force=1
66 elif [[ "$arg" == "-h" || "$arg" == "--help" ]] ; then
67 usage
68 exit 0
69 else
70 echo "Unknown option: $arg"
71 echo
72 usage
73 exit 2
75 done
77 if [[ ! "$force" && "$action" != "list-files" ]] ; then
78 if ! git diff-files --quiet ; then
79 echo "Modified files found in work tree. Use -f to override."
80 exit 1
84 case "$action" in
85 list-files)
86 command=cat
88 uncrustify)
89 # Check that uncrustify is present
90 if [ -z "$UNCRUSTIFY" ] ; then
91 echo "Please set the path to uncrustify using UNCRUSTIFY."
92 echo "Note that you need a custom version of uncrustify."
93 echo "See comments in the script file for how to get one."
94 exit 2
96 if ! which "$UNCRUSTIFY" 1>/dev/null ; then
97 echo "Uncrustify not found: $UNCRUSTIFY"
98 exit 2
100 command="xargs $UNCRUSTIFY -c admin/uncrustify.cfg --no-backup"
102 clang-format)
103 if [ -z "$CLANG_FORMAT" ] ; then
104 CLANG_FORMAT=clang-format-7
106 if ! which "$CLANG_FORMAT" 1>/dev/null ; then
107 echo "clang-format not found. Specify one with CLANG_FORMAT"
108 exit 2
110 command="xargs $CLANG_FORMAT -i"
112 copyright)
113 command="xargs admin/copyright.py --check"
115 includesort)
116 if [ -z "${builddir}" ] ; then
117 echo "Build directory must be set with -B for includesort."
118 exit 2
120 command="docs/doxygen/includesorter.py -S . -B ${builddir} -F -"
123 echo "Unknown action: $action"
124 exit 2
125 esac
127 if [[ "$filter" == "default" ]] ; then
128 if [[ "$action" == "clang-format" ]] ; then
129 filter=clangformat
130 else
131 filter=$action
135 case "$filter" in
136 includesort)
137 filter_re="(complete_formatting|includesort)"
139 uncrustify)
140 filter_re="(uncrustify)"
142 copyright)
143 filter_re="(complete_formatting|copyright)"
145 clangformat)
146 filter_re="(complete_formatting|clangformat)"
148 complete_formatting)
149 filter_re="(complete_formatting|clangformat)"
152 echo "Unknown filter mode: $filter"
153 echo
154 usage
155 exit 2
156 esac
158 cd `git rev-parse --show-toplevel`
160 if ! git ls-files "${patterns[@]}" | git check-attr --stdin filter | \
161 sed -nEe "/${filter_re}$/ {s/:.*//;p;}" | $command ; then
162 echo "The reformatting command failed! Please check the output."
163 exit 1