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37 /* This file is completely threadsafe - keep it that way! */
40 #include "cstringutil.h"
53 #include "gromacs/utility/basedefinitions.h"
54 #include "gromacs/utility/fatalerror.h"
55 #include "gromacs/utility/futil.h"
56 #include "gromacs/utility/smalloc.h"
57 #include "gromacs/utility/sysinfo.h"
59 int continuing(char *s
)
66 if ((sl
> 0) && (s
[sl
-1] == CONTINUE
))
79 char *fgets2(char *line
, int n
, FILE *stream
)
82 if (fgets(line
, n
, stream
) == nullptr)
86 if ((c
= strchr(line
, '\n')) != nullptr)
92 /* A line not ending in a newline can only occur at the end of a file,
93 * or because of n being too small.
94 * Since both cases occur very infrequently, we can check for EOF.
98 gmx_fatal(FARGS
, "An input file contains a line longer than %d characters, while the buffer passed to fgets2 has size %d. The line starts with: '%20.20s'", n
, n
, line
);
101 if ((c
= strchr(line
, '\r')) != nullptr)
109 void strip_comment (char *line
)
118 /* search for a comment mark and replace it by a zero */
119 if ((c
= strchr(line
, COMMENTSIGN
)) != nullptr)
125 void upstring (char *str
)
129 for (i
= 0; (i
< (int)strlen(str
)); i
++)
131 str
[i
] = toupper(str
[i
]);
135 void ltrim (char *str
)
145 while (('\0' != str
[c
]) && isspace(str
[c
]))
151 for (i
= c
; ('\0' != str
[i
]); i
++)
159 void rtrim (char *str
)
169 while ((nul
> 0) && ((str
[nul
] == ' ') || (str
[nul
] == '\t')) )
176 void trim (char *str
)
182 void nice_header(FILE *out
, const char *fn
)
187 char timebuf
[STRLEN
];
189 /* Print a nice header above the file */
190 fprintf(out
, "%c\n", COMMENTSIGN
);
191 fprintf(out
, "%c\tFile '%s' was generated\n", COMMENTSIGN
, fn
? fn
: "unknown");
194 gmx_getusername(userbuf
, 256);
195 gmx_gethostname(hostbuf
, 256);
196 gmx_format_current_time(timebuf
, STRLEN
);
198 fprintf(out
, "%c\tBy user: %s (%d)\n", COMMENTSIGN
, userbuf
, uid
);
199 fprintf(out
, "%c\tOn host: %s\n", COMMENTSIGN
, hostbuf
);
200 fprintf(out
, "%c\tAt date: %s\n", COMMENTSIGN
, timebuf
);
201 fprintf(out
, "%c\n", COMMENTSIGN
);
204 int gmx_strcasecmp_min(const char *str1
, const char *str2
)
212 ch1
= toupper(*(str1
++));
214 while ((ch1
== '-') || (ch1
== '_'));
217 ch2
= toupper(*(str2
++));
219 while ((ch2
== '-') || (ch2
== '_'));
230 int gmx_strncasecmp_min(const char *str1
, const char *str2
, int n
)
235 stri1
= (char *)str1
;
236 stri2
= (char *)str2
;
241 ch1
= toupper(*(str1
++));
243 while ((ch1
== '-') || (ch1
== '_'));
246 ch2
= toupper(*(str2
++));
248 while ((ch2
== '-') || (ch2
== '_'));
255 while (ch1
&& (str1
-stri1
< n
) && (str2
-stri2
< n
));
259 int gmx_strcasecmp(const char *str1
, const char *str2
)
265 ch1
= toupper(*(str1
++));
266 ch2
= toupper(*(str2
++));
276 int gmx_strncasecmp(const char *str1
, const char *str2
, int n
)
287 ch1
= toupper(*(str1
++));
288 ch2
= toupper(*(str2
++));
299 char *gmx_strdup(const char *src
)
303 snew(dest
, strlen(src
)+1);
310 gmx_strndup(const char *src
, int n
)
321 strncpy(dest
, src
, len
);
326 /* Magic hash init number for Dan J. Bernsteins algorithm.
327 * Do NOT use any other value unless you really know what you are doing.
330 gmx_string_hash_init
= 5381;
334 gmx_string_fullhash_func(const char *s
, unsigned int hash_init
)
338 while ((c
= (*s
++)) != '\0')
340 hash_init
= ((hash_init
<< 5) + hash_init
) ^ c
; /* (hash * 33) xor c */
346 gmx_string_hash_func(const char *s
, unsigned int hash_init
)
350 while ((c
= toupper(*s
++)) != '\0')
354 hash_init
= ((hash_init
<< 5) + hash_init
) ^ c
; /* (hash * 33) xor c */
361 gmx_wcmatch(const char *pattern
, const char *str
)
367 /* Skip multiple wildcards in a sequence */
368 while (*pattern
== '*' || *pattern
== '?')
371 /* For ?, we need to check that there are characters left
377 return GMX_NO_WCMATCH
;
385 /* If the pattern ends after the star, we have a match */
390 /* Match the rest against each possible suffix of str */
393 /* Only do the recursive call if the first character
394 * matches. We don't have to worry about wildcards here,
395 * since we have processed them above. */
396 if (*pattern
== *str
)
399 /* Match the suffix, and return if a match or an error */
400 rc
= gmx_wcmatch(pattern
, str
);
401 if (rc
!= GMX_NO_WCMATCH
)
408 /* If no suffix of str matches, we don't have a match */
409 return GMX_NO_WCMATCH
;
411 else if ((*pattern
== '?' && *str
!= 0) || *pattern
== *str
)
417 return GMX_NO_WCMATCH
;
421 /* When the pattern runs out, we have a match if the string has ended. */
422 return (*str
== 0) ? 0 : GMX_NO_WCMATCH
;
425 char *wrap_lines(const char *buf
, int line_width
, int indent
, gmx_bool bIndentFirst
)
428 int i
, i0
, i2
, j
, b2len
, lspace
= 0, l2space
= 0;
429 gmx_bool bFirst
, bFitsOnLine
;
431 /* characters are copied from buf to b2 with possible spaces changed
432 * into newlines and extra space added for indentation.
433 * i indexes buf (source buffer) and i2 indexes b2 (destination buffer)
434 * i0 points to the beginning of the current line (in buf, source)
435 * lspace and l2space point to the last space on the current line
436 * bFirst is set to prevent indentation of first line
437 * bFitsOnLine says if the first space occurred before line_width, if
438 * that is not the case, we have a word longer than line_width which
439 * will also not fit on the next line, so we might as well keep it on
440 * the current line (where it also won't fit, but looks better)
444 b2len
= strlen(buf
)+1+indent
;
449 for (i2
= 0; (i2
< indent
); i2
++)
458 /* find the last space before end of line */
459 for (i
= i0
; ((i
-i0
< line_width
) || (l2space
== -1)) && (buf
[i
]); i
++)
462 /* remember the position of a space */
468 /* if we have a newline before the line is full, reset counters */
469 if (buf
[i
] == '\n' && buf
[i
+1])
474 /* add indentation after the newline */
475 for (j
= 0; (j
< indent
); j
++)
481 /* If we are at the last newline, copy it */
482 if (buf
[i
] == '\n' && !buf
[i
+1])
486 /* if we're not at the end of the string */
489 /* check if one word does not fit on the line */
490 bFitsOnLine
= (i
-i0
<= line_width
);
491 /* reset line counters to just after the space */
494 /* if the words fit on the line, and we're beyond the indentation part */
495 if ( (bFitsOnLine
) && (l2space
>= indent
) )
497 /* start a new line */
499 /* and add indentation */
504 line_width
-= indent
;
509 for (j
= 0; (j
< indent
); j
++)
513 /* no extra spaces after indent; */
514 while (buf
[i0
] == ' ')
529 str_to_int64_t(const char *str
, char **endptr
)
532 return strtoll(str
, endptr
, 10);
534 return _strtoi64(str
, endptr
, 10);
538 char *gmx_step_str(gmx_int64_t i
, char *buf
)
540 sprintf(buf
, "%" GMX_PRId64
, i
);
544 void parse_digits_from_string(const char *digitstring
, int *ndigits
, int **digitlist
)
546 /* TODO use std::string, once gmx_gpu_opt_t is ready for it */
547 if (nullptr == digitstring
)
550 *digitlist
= nullptr;
554 if (strstr(digitstring
, ",") != nullptr)
556 parse_digits_from_csv_string(digitstring
, ndigits
, digitlist
);
560 parse_digits_from_plain_string(digitstring
, ndigits
, digitlist
);
564 void parse_digits_from_plain_string(const char *digitstring
, int *ndigits
, int **digitlist
)
568 if (nullptr == digitstring
)
571 *digitlist
= nullptr;
575 *ndigits
= strlen(digitstring
);
577 snew(*digitlist
, *ndigits
);
579 for (i
= 0; i
< *ndigits
; i
++)
581 if (digitstring
[i
] < '0' || digitstring
[i
] > '9')
583 gmx_fatal(FARGS
, "Invalid character in digit-only string: '%c'\n",
586 (*digitlist
)[i
] = digitstring
[i
] - '0';
590 void parse_digits_from_csv_string(const char *digitstring
, int *ndigits
, int **digitlist
)
592 if (nullptr == digitstring
)
595 *digitlist
= nullptr;
599 std::vector
<int> digits
;
600 std::istringstream
ss(digitstring
);
602 while (std::getline(ss
, token
, ','))
604 if (token
.find_first_not_of("0123456789") != std::string::npos
)
606 gmx_fatal(FARGS
, "Invalid token in digit-only string: \"%s\"\n",
609 int number
= static_cast<int>(str_to_int64_t(token
.c_str(), nullptr));
610 digits
.push_back(number
);
613 *ndigits
= digits
.size();
614 snew(*digitlist
, *ndigits
);
615 for (size_t i
= 0; i
< digits
.size(); i
++)
617 (*digitlist
)[i
] = digits
[i
];