Refactor SD update
[gromacs.git] / src / gromacs / math / vecdump.cpp
blobb97f64f3c31236bb67a3cac53aca91defb6604d8
1 /*
2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
5 * Copyright (c) 2001-2004, The GROMACS development team.
6 * Copyright (c) 2013,2014,2015,2016,2017, by the GROMACS development team, led by
7 * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
8 * and including many others, as listed in the AUTHORS file in the
9 * top-level source directory and at http://www.gromacs.org.
11 * GROMACS is free software; you can redistribute it and/or
12 * modify it under the terms of the GNU Lesser General Public License
13 * as published by the Free Software Foundation; either version 2.1
14 * of the License, or (at your option) any later version.
16 * GROMACS is distributed in the hope that it will be useful,
17 * but WITHOUT ANY WARRANTY; without even the implied warranty of
18 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
19 * Lesser General Public License for more details.
21 * You should have received a copy of the GNU Lesser General Public
22 * License along with GROMACS; if not, see
23 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
24 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
26 * If you want to redistribute modifications to GROMACS, please
27 * consider that scientific software is very special. Version
28 * control is crucial - bugs must be traceable. We will be happy to
29 * consider code for inclusion in the official distribution, but
30 * derived work must not be called official GROMACS. Details are found
31 * in the README & COPYING files - if they are missing, get the
32 * official version at http://www.gromacs.org.
34 * To help us fund GROMACS development, we humbly ask that you cite
35 * the research papers on the package. Check out http://www.gromacs.org.
37 #include "gmxpre.h"
39 #include "vecdump.h"
41 #include <cstdio>
42 #include <cstdlib>
44 #include "gromacs/math/vec.h"
45 #include "gromacs/utility/strconvert.h"
46 #include "gromacs/utility/txtdump.h"
48 void pr_ivec(FILE *fp, int indent, const char *title, const int vec[], int n, gmx_bool bShowNumbers)
50 int i;
52 if (available(fp, vec, indent, title))
54 indent = pr_title_n(fp, indent, title, n);
55 for (i = 0; i < n; i++)
57 pr_indent(fp, indent);
58 fprintf(fp, "%s[%d]=%d\n", title, bShowNumbers ? i : -1, vec[i]);
63 void pr_ivec_block(FILE *fp, int indent, const char *title, const int vec[], int n, gmx_bool bShowNumbers)
65 int i, j;
67 if (available(fp, vec, indent, title))
69 indent = pr_title_n(fp, indent, title, n);
70 i = 0;
71 while (i < n)
73 j = i+1;
74 while (j < n && vec[j] == vec[j-1]+1)
76 j++;
78 /* Print consecutive groups of 3 or more as blocks */
79 if (j - i < 3)
81 while (i < j)
83 pr_indent(fp, indent);
84 fprintf(fp, "%s[%d]=%d\n",
85 title, bShowNumbers ? i : -1, vec[i]);
86 i++;
89 else
91 pr_indent(fp, indent);
92 fprintf(fp, "%s[%d,...,%d] = {%d,...,%d}\n",
93 title,
94 bShowNumbers ? i : -1,
95 bShowNumbers ? j-1 : -1,
96 vec[i], vec[j-1]);
97 i = j;
103 void pr_bvec(FILE *fp, int indent, const char *title, const gmx_bool vec[], int n, gmx_bool bShowNumbers)
105 int i;
107 if (available(fp, vec, indent, title))
109 indent = pr_title_n(fp, indent, title, n);
110 for (i = 0; i < n; i++)
112 pr_indent(fp, indent);
113 fprintf(fp, "%s[%d]=%s\n", title, bShowNumbers ? i : -1,
114 gmx::boolToString(vec[i]));
119 void pr_ivecs(FILE *fp, int indent, const char *title, const ivec vec[], int n, gmx_bool bShowNumbers)
121 int i, j;
123 if (available(fp, vec, indent, title))
125 indent = pr_title_nxn(fp, indent, title, n, DIM);
126 for (i = 0; i < n; i++)
128 pr_indent(fp, indent);
129 fprintf(fp, "%s[%d]={", title, bShowNumbers ? i : -1);
130 for (j = 0; j < DIM; j++)
132 if (j != 0)
134 fprintf(fp, ", ");
136 fprintf(fp, "%d", vec[i][j]);
138 fprintf(fp, "}\n");
143 template <typename T>
144 static void printRealVector(FILE *fp, int indent, const char *title, const T vec[], int n, gmx_bool bShowNumbers)
146 if (available(fp, vec, indent, title))
148 indent = pr_title_n(fp, indent, title, n);
149 for (int i = 0; i < n; i++)
151 pr_indent(fp, indent);
152 fprintf(fp, "%s[%d]=%12.5e\n", title, bShowNumbers ? i : -1, vec[i]);
157 void pr_rvec(FILE *fp, int indent, const char *title, const real vec[], int n, gmx_bool bShowNumbers)
159 printRealVector<real>(fp, indent, title, vec, n, bShowNumbers);
162 void pr_fvec(FILE *fp, int indent, const char *title, const float vec[], int n, gmx_bool bShowNumbers)
164 printRealVector<float>(fp, indent, title, vec, n, bShowNumbers);
167 void pr_dvec(FILE *fp, int indent, const char *title, const double vec[], int n, gmx_bool bShowNumbers)
169 printRealVector<double>(fp, indent, title, vec, n, bShowNumbers);
173 void pr_rvecs_len(FILE *fp, int indent, const char *title, const rvec vec[], int n)
175 int i, j;
177 if (available(fp, vec, indent, title))
179 indent = pr_title_nxn(fp, indent, title, n, DIM);
180 for (i = 0; i < n; i++)
182 pr_indent(fp, indent);
183 fprintf(fp, "%s[%5d]={", title, i);
184 for (j = 0; j < DIM; j++)
186 if (j != 0)
188 fprintf(fp, ", ");
190 fprintf(fp, "%12.5e", vec[i][j]);
192 fprintf(fp, "} len=%12.5e\n", norm(vec[i]));
197 void pr_rvecs(FILE *fp, int indent, const char *title, const rvec vec[], int n)
199 const char *fshort = "%12.5e";
200 const char *flong = "%15.8e";
201 const char *format;
202 int i, j;
204 if (getenv("GMX_PRINT_LONGFORMAT") != nullptr)
206 format = flong;
208 else
210 format = fshort;
213 if (available(fp, vec, indent, title))
215 indent = pr_title_nxn(fp, indent, title, n, DIM);
216 for (i = 0; i < n; i++)
218 pr_indent(fp, indent);
219 fprintf(fp, "%s[%5d]={", title, i);
220 for (j = 0; j < DIM; j++)
222 if (j != 0)
224 fprintf(fp, ", ");
226 fprintf(fp, format, vec[i][j]);
228 fprintf(fp, "}\n");
234 void pr_rvecs_of_dim(FILE *fp, int indent, const char *title, const rvec vec[], int n, int dim)
236 const char *fshort = "%12.5e";
237 const char *flong = "%15.8e";
238 const char *format;
239 int i, j;
241 if (getenv("GMX_PRINT_LONGFORMAT") != nullptr)
243 format = flong;
245 else
247 format = fshort;
250 if (available(fp, vec, indent, title))
252 indent = pr_title_nxn(fp, indent, title, n, dim);
253 for (i = 0; i < n; i++)
255 pr_indent(fp, indent);
256 fprintf(fp, "%s[%5d]={", title, i);
257 for (j = 0; j < dim; j++)
259 if (j != 0)
261 fprintf(fp, ", ");
263 fprintf(fp, format, vec[i][j]);
265 fprintf(fp, "}\n");