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670 themselves, then this License, and its terms, do not apply to those
671 sections when you distribute them as separate works. But when you
672 distribute the same sections as part of a whole which is a work based
673 on the Program, the distribution of the whole must be on the terms of
674 this License, whose permissions for other licensees extend to the
675 entire whole, and thus to each and every part regardless of who wrote it.
677 Thus, it is not the intent of this section to claim rights or contest
678 your rights to work written entirely by you; rather, the intent is to
679 exercise the right to control the distribution of derivative or
680 collective works based on the Program.
682 In addition, mere aggregation of another work not based on the Program
683 with the Program (or with a work based on the Program) on a volume of
684 a storage or distribution medium does not bring the other work under
685 the scope of this License.
687 3. You may copy and distribute the Program (or a work based on it,
688 under Section 2) in object code or executable form under the terms of
689 Sections 1 and 2 above provided that you also do one of the following:
691 a) Accompany it with the complete corresponding machine-readable
692 source code, which must be distributed under the terms of Sections
693 1 and 2 above on a medium customarily used for software interchange; or,
695 b) Accompany it with a written offer, valid for at least three
696 years, to give any third party, for a charge no more than your
697 cost of physically performing source distribution, a complete
698 machine-readable copy of the corresponding source code, to be
699 distributed under the terms of Sections 1 and 2 above on a medium
700 customarily used for software interchange; or,
702 c) Accompany it with the information you received as to the offer
703 to distribute corresponding source code. (This alternative is
704 allowed only for noncommercial distribution and only if you
705 received the program in object code or executable form with such
706 an offer, in accord with Subsection b above.)
708 The source code for a work means the preferred form of the work for
709 making modifications to it. For an executable work, complete source
710 code means all the source code for all modules it contains, plus any
711 associated interface definition files, plus the scripts used to
712 control compilation and installation of the executable. However, as a
713 special exception, the source code distributed need not include
714 anything that is normally distributed (in either source or binary
715 form) with the major components (compiler, kernel, and so on) of the
716 operating system on which the executable runs, unless that component
717 itself accompanies the executable.
719 If distribution of executable or object code is made by offering
720 access to copy from a designated place, then offering equivalent
721 access to copy the source code from the same place counts as
722 distribution of the source code, even though third parties are not
723 compelled to copy the source along with the object code.
725 4. You may not copy, modify, sublicense, or distribute the Program
726 except as expressly provided under this License. Any attempt
727 otherwise to copy, modify, sublicense or distribute the Program is
728 void, and will automatically terminate your rights under this License.
729 However, parties who have received copies, or rights, from you under
730 this License will not have their licenses terminated so long as such
731 parties remain in full compliance.
733 5. You are not required to accept this License, since you have not
734 signed it. However, nothing else grants you permission to modify or
735 distribute the Program or its derivative works. These actions are
736 prohibited by law if you do not accept this License. Therefore, by
737 modifying or distributing the Program (or any work based on the
738 Program), you indicate your acceptance of this License to do so, and
739 all its terms and conditions for copying, distributing or modifying
740 the Program or works based on it.
742 6. Each time you redistribute the Program (or any work based on the
743 Program), the recipient automatically receives a license from the
744 original licensor to copy, distribute or modify the Program subject to
745 these terms and conditions. You may not impose any further
746 restrictions on the recipients' exercise of the rights granted herein.
747 You are not responsible for enforcing compliance by third parties to
750 7. If, as a consequence of a court judgment or allegation of patent
751 infringement or for any other reason (not limited to patent issues),
752 conditions are imposed on you (whether by court order, agreement or
753 otherwise) that contradict the conditions of this License, they do not
754 excuse you from the conditions of this License. If you cannot
755 distribute so as to satisfy simultaneously your obligations under this
756 License and any other pertinent obligations, then as a consequence you
757 may not distribute the Program at all. For example, if a patent
758 license would not permit royalty-free redistribution of the Program by
759 all those who receive copies directly or indirectly through you, then
760 the only way you could satisfy both it and this License would be to
761 refrain entirely from distribution of the Program.
763 If any portion of this section is held invalid or unenforceable under
764 any particular circumstance, the balance of the section is intended to
765 apply and the section as a whole is intended to apply in other
768 It is not the purpose of this section to induce you to infringe any
769 patents or other property right claims or to contest validity of any
770 such claims; this section has the sole purpose of protecting the
771 integrity of the free software distribution system, which is
772 implemented by public license practices. Many people have made
773 generous contributions to the wide range of software distributed
774 through that system in reliance on consistent application of that
775 system; it is up to the author/donor to decide if he or she is willing
776 to distribute software through any other system and a licensee cannot
779 This section is intended to make thoroughly clear what is believed to
780 be a consequence of the rest of this License.
782 8. If the distribution and/or use of the Program is restricted in
783 certain countries either by patents or by copyrighted interfaces, the
784 original copyright holder who places the Program under this License
785 may add an explicit geographical distribution limitation excluding
786 those countries, so that distribution is permitted only in or among
787 countries not thus excluded. In such case, this License incorporates
788 the limitation as if written in the body of this License.
790 9. The Free Software Foundation may publish revised and/or new versions
791 of the General Public License from time to time. Such new versions will
792 be similar in spirit to the present version, but may differ in detail to
793 address new problems or concerns.
795 Each version is given a distinguishing version number. If the Program
796 specifies a version number of this License which applies to it and "any
797 later version", you have the option of following the terms and conditions
798 either of that version or of any later version published by the Free
799 Software Foundation. If the Program does not specify a version number of
800 this License, you may choose any version ever published by the Free Software
803 10. If you wish to incorporate parts of the Program into other free
804 programs whose distribution conditions are different, write to the author
805 to ask for permission. For software which is copyrighted by the Free
806 Software Foundation, write to the Free Software Foundation; we sometimes
807 make exceptions for this. Our decision will be guided by the two goals
808 of preserving the free status of all derivatives of our free software and
809 of promoting the sharing and reuse of software generally.
813 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
814 FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN
815 OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
816 PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
817 OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
818 MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS
819 TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE
820 PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
821 REPAIR OR CORRECTION.
823 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
824 WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
825 REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
826 INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
827 OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
828 TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
829 YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
830 PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
831 POSSIBILITY OF SUCH DAMAGES.
833 END OF TERMS AND CONDITIONS
835 How to Apply These Terms to Your New Programs
837 If you develop a new program, and you want it to be of the greatest
838 possible use to the public, the best way to achieve this is to make it
839 free software which everyone can redistribute and change under these terms.
841 To do so, attach the following notices to the program. It is safest
842 to attach them to the start of each source file to most effectively
843 convey the exclusion of warranty; and each file should have at least
844 the "copyright" line and a pointer to where the full notice is found.
846 <one line to give the program's name and a brief idea of what it does.>
847 Copyright (C) <year> <name of author>
849 This program is free software; you can redistribute it and/or modify
850 it under the terms of the GNU General Public License as published by
851 the Free Software Foundation; either version 2 of the License, or
852 (at your option) any later version.
854 This program is distributed in the hope that it will be useful,
855 but WITHOUT ANY WARRANTY; without even the implied warranty of
856 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
857 GNU General Public License for more details.
859 You should have received a copy of the GNU General Public License along
860 with this program; if not, write to the Free Software Foundation, Inc.,
861 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
863 Also add information on how to contact you by electronic and paper mail.
865 If the program is interactive, make it output a short notice like this
866 when it starts in an interactive mode:
868 Gnomovision version 69, Copyright (C) year name of author
869 Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
870 This is free software, and you are welcome to redistribute it
871 under certain conditions; type `show c' for details.
873 The hypothetical commands `show w' and `show c' should show the appropriate
874 parts of the General Public License. Of course, the commands you use may
875 be called something other than `show w' and `show c'; they could even be
876 mouse-clicks or menu items--whatever suits your program.
878 You should also get your employer (if you work as a programmer) or your
879 school, if any, to sign a "copyright disclaimer" for the program, if
880 necessary. Here is a sample; alter the names:
882 Yoyodyne, Inc., hereby disclaims all copyright interest in the program
883 `Gnomovision' (which makes passes at compilers) written by James Hacker.
885 <signature of Ty Coon>, 1 April 1989
886 Ty Coon, President of Vice
888 This General Public License does not permit incorporating your program into
889 proprietary programs. If your program is a subroutine library, you may
890 consider it more useful to permit linking proprietary applications with the
891 library. If this is what you want to do, use the GNU Lesser General
892 Public License instead of this License.
894 2. Trajectory file reading using VMD plugins
895 ============================================
897 Files: src/external/vmd_molfile/
898 src/gromacs/fileio/vmdio.c
900 (C) Copyright 1995-2009 The Board of Trustees of the
901 University of Illinois
904 Developed by: Theoretical and Computational Biophysics Group
905 University of Illinois at Urbana-Champaign
906 http://www.ks.uiuc.edu/
908 Permission is hereby granted, free of charge, to any person obtaining a copy of
909 this software and associated documentation files (the Software), to deal with
910 the Software without restriction, including without limitation the rights to
911 use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
912 of the Software, and to permit persons to whom the Software is furnished to
913 do so, subject to the following conditions:
915 Redistributions of source code must retain the above copyright notice,
916 this list of conditions and the following disclaimers.
918 Redistributions in binary form must reproduce the above copyright notice,
919 this list of conditions and the following disclaimers in the documentation
920 and/or other materials provided with the distribution.
922 Neither the names of Theoretical and Computational Biophysics Group,
923 University of Illinois at Urbana-Champaign, nor the names of its contributors
924 may be used to endorse or promote products derived from this Software without
925 specific prior written permission.
927 THE SOFTWARE IS PROVIDED AS IS, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
928 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
929 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
930 THE CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR
931 OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
932 ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
933 OTHER DEALINGS WITH THE SOFTWARE.
935 3. Internal FFT (ffpack)
936 ========================
938 Files: src/external/fftpack/fftpack.c
940 Copyright (c) 2005-2011, NumPy Developers.
943 Redistribution and use in source and binary forms, with or without
944 modification, are permitted provided that the following conditions are
947 * Redistributions of source code must retain the above copyright
948 notice, this list of conditions and the following disclaimer.
950 * Redistributions in binary form must reproduce the above
951 copyright notice, this list of conditions and the following
952 disclaimer in the documentation and/or other materials provided
953 with the distribution.
955 * Neither the name of the NumPy Developers nor the names of any
956 contributors may be used to endorse or promote products derived
957 from this software without specific prior written permission.
959 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
960 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
961 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
962 A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
963 OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
964 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
965 LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
966 DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
967 THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
968 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
969 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
971 fftpack.c : A set of FFT routines in C.
972 Algorithmically based on Fortran-77 FFTPACK by Paul N. Swarztrauber (Version 4, 1985).
977 Files: src/external/thread_mpi/
979 Copyright (c) 2009-2012, Sander Pronk & Erik Lindahl.
982 Redistribution and use in source and binary forms, with or without
983 modification, are permitted provided that the following conditions are met:
984 1) Redistributions of source code must retain the above copyright
985 notice, this list of conditions and the following disclaimer.
986 2) Redistributions in binary form must reproduce the above copyright
987 notice, this list of conditions and the following disclaimer in the
988 documentation and/or other materials provided with the distribution.
989 3) Neither the name of the <organization> nor the
990 names of its contributors may be used to endorse or promote products
991 derived from this software without specific prior written permission.
993 THIS SOFTWARE IS PROVIDED BY US ''AS IS'' AND ANY
994 EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
995 WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
996 DISCLAIMED. IN NO EVENT SHALL <copyright holder> BE LIABLE FOR ANY
997 DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
998 (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
999 LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
1000 ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
1001 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
1002 SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
1004 If you want to redistribute modifications, please consider that
1005 scientific software is very special. Version control is crucial -
1006 bugs must be traceable. We will be happy to consider code for
1007 inclusion in the official distribution, but derived work should not
1008 be called official thread_mpi.
1013 These files are semi-automatic translations by f2c from the original netlib BLAS library.
1014 The source has been modified to (mostly) use modern C formatting, and to get rid of
1015 compiler warnings. Any errors in doing this should be blamed on the GROMACS developers, and
1016 not the reference BLAS implementation.
1018 The reference BLAS implementation is available from http://www.netlib.org/blas
1020 BLAS does not come with a formal named "license", but a general statement that
1022 "The reference BLAS is a freely-available software package. It is available from netlib
1023 via anonymous ftp and the World Wide Web. Thus, it can be included in commercial software
1024 packages (and has been). We only ask that proper credit be given to the authors."
1026 While the rest of GROMACS is LGPL, we think it's only fair to give you the same rights to
1027 our modified BLAS files as the original netlib versions, so do what you want with them.
1028 However, be warned that we have only tested that they do the right thing in the cases used
1029 in GROMACS (primarily full & sparse matrix diagonalization), so in most cases it is a much
1030 better idea to use the full reference implementation.
1032 Erik Lindahl, 2008-10-07.
1037 These files are semi-automatic translations by f2c from the original netlib LAPACK library.
1038 The source has been modified to (mostly) use modern C formatting, and to get rid of
1039 compiler warnings. Any errors in doing this should be blamed on the GROMACS developers, and
1040 not the reference LAPACK implementation.
1042 The reference LAPACK implementation is available from http://www.netlib.org/lapack
1044 LAPACK does not come with a formal named "license", but a general statement saying:
1046 "The reference LAPACK is a freely-available software package. It is available from netlib
1047 via anonymous ftp and the World Wide Web. Thus, it can be included in commercial software
1048 packages (and has been). We only ask that proper credit be given to the authors."
1050 While the rest of GROMACS is LGPL, we think it's only fair to give you the same rights to
1051 our modified LAPACK files as the original netlib versions, so do what you want with them.
1053 However, be warned that we have only tested that they do the right thing in the cases used
1054 in GROMACS (primarily full & sparse matrix diagonalization), so in most cases it is a much
1055 better idea to use the full reference implementation.
1057 Erik Lindahl, 2008-10-07.
1059 7. Parts of Boost C++ library
1060 =============================
1062 Files: src/gromacs/utility/current_function.h
1063 src/gromacs/utility/path.cpp
1065 Boost Software License - Version 1.0 - August 17th, 2003
1067 Permission is hereby granted, free of charge, to any person or organization
1068 obtaining a copy of the software and accompanying documentation covered by
1069 this license (the "Software") to use, reproduce, display, distribute,
1070 execute, and transmit the Software, and to prepare derivative works of the
1071 Software, and to permit third-parties to whom the Software is furnished to
1072 do so, all subject to the following:
1074 The copyright notices in the Software and this entire statement, including
1075 the above license grant, this restriction and the following disclaimer,
1076 must be included in all copies of the Software, in whole or in part, and
1077 all derivative works of the Software, unless such copies or derivative
1078 works are solely in the form of machine-executable object code generated by
1079 a source language processor.
1081 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
1082 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
1083 FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
1084 SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE
1085 FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
1086 ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
1087 DEALINGS IN THE SOFTWARE.
1089 8. Google Test and Google Mock
1090 ===============================
1092 Files: src/external/gmock-1.7.0/*
1094 Copyright 2008, Google Inc.
1095 All rights reserved.
1097 Redistribution and use in source and binary forms, with or without
1098 modification, are permitted provided that the following conditions are
1101 * Redistributions of source code must retain the above copyright
1102 notice, this list of conditions and the following disclaimer.
1103 * Redistributions in binary form must reproduce the above
1104 copyright notice, this list of conditions and the following disclaimer
1105 in the documentation and/or other materials provided with the
1107 * Neither the name of Google Inc. nor the names of its
1108 contributors may be used to endorse or promote products derived from
1109 this software without specific prior written permission.
1111 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
1112 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
1113 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
1114 A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
1115 OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
1116 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
1117 LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
1118 DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
1119 THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
1120 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
1121 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
1124 9. Sun Extensible Data Representation routines (XDR)
1125 =====================================================
1127 Files: src/gromacs/fileio/gmx_system_xdr.c
1129 Sun RPC is a product of Sun Microsystems, Inc. and is provided for
1130 unrestricted use provided that this legend is included on all tape
1131 media and as a part of the software program in whole or part. Users
1132 may copy or modify Sun RPC without charge, but are not authorized
1133 to license or distribute it to anyone else except as part of a product or
1134 program developed by the user.
1136 SUN RPC IS PROVIDED AS IS WITH NO WARRANTIES OF ANY KIND INCLUDING THE
1137 WARRANTIES OF DESIGN, MERCHANTIBILITY AND FITNESS FOR A PARTICULAR
1138 PURPOSE, OR ARISING FROM A COURSE OF DEALING, USAGE OR TRADE PRACTICE.
1140 Sun RPC is provided with no support and without any obligation on the
1141 part of Sun Microsystems, Inc. to assist in its use, correction,
1142 modification or enhancement.
1144 SUN MICROSYSTEMS, INC. SHALL HAVE NO LIABILITY WITH RESPECT TO THE
1145 INFRINGEMENT OF COPYRIGHTS, TRADE SECRETS OR ANY PATENTS BY SUN RPC
1146 OR ANY PART THEREOF.
1148 In no event will Sun Microsystems, Inc. be liable for any lost revenue
1149 or profits or other special, indirect and consequential damages, even if
1150 Sun has been advised of the possibility of such damages.
1152 Sun Microsystems, Inc.
1154 Mountain View, California 94043
1157 10. Sun FDLIBM (Freely Distributable Maths Library)
1158 ===================================================
1160 Files: src/gromacs/math/utilities.c
1162 Copyright (C) 1993 by Sun Microsystems, Inc. All rights reserved.
1164 Developed at SunSoft, a Sun Microsystems, Inc. business.
1165 Permission to use, copy, modify, and distribute this
1166 software is freely granted, provided that this notice
1170 11. ThreeFry Random Engine
1171 ============================================
1173 Based on proposed Boost implementations by
1174 a) John Salmon, Copyright 2010-2014 by D. E. Shaw Research
1175 b) Thijs van den Berg, Copyright (c) 2014 M.A. (Thijs) van den Berg
1177 Boost Software License - Version 1.0 - August 17th, 2003
1179 Permission is hereby granted, free of charge, to any person or organization
1180 obtaining a copy of the software and accompanying documentation covered by
1181 this license (the "Software") to use, reproduce, display, distribute,
1182 execute, and transmit the Software, and to prepare derivative works of the
1183 Software, and to permit third-parties to whom the Software is furnished to
1184 do so, all subject to the following:
1186 The copyright notices in the Software and this entire statement, including
1187 the above license grant, this restriction and the following disclaimer,
1188 must be included in all copies of the Software, in whole or in part, and
1189 all derivative works of the Software, unless such copies or derivative
1190 works are solely in the form of machine-executable object code generated by
1191 a source language processor.
1193 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
1194 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
1195 FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
1196 SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE
1197 FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
1198 ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
1199 DEALINGS IN THE SOFTWARE.
1201 12. Gamma distribution from libc++
1202 ============================================
1204 Copyright (c) The LLVM compiler infrastructure
1206 Permission is hereby granted, free of charge, to any person obtaining a copy
1207 of this software and associated documentation files (the "Software"), to deal
1208 in the Software without restriction, including without limitation the rights
1209 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
1210 copies of the Software, and to permit persons to whom the Software is
1211 furnished to do so, subject to the following conditions:
1213 The above copyright notice and this permission notice shall be included in
1214 all copies or substantial portions of the Software.
1216 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
1217 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
1218 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
1219 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
1220 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
1221 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
1226 ============================================
1228 Copyright (C) 1999, 2002 Aladdin Enterprises. All rights reserved.
1230 This software is provided 'as-is', without any express or implied
1231 warranty. In no event will the authors be held liable for any damages
1232 arising from the use of this software.
1234 Permission is granted to anyone to use this software for any purpose,
1235 including commercial applications, and to alter it and redistribute it
1236 freely, subject to the following restrictions:
1238 1. The origin of this software must not be misrepresented; you must not
1239 claim that you wrote the original software. If you use this software
1240 in a product, an acknowledgment in the product documentation would be
1241 appreciated but is not required.
1242 2. Altered source versions must be plainly marked as such, and must not be
1243 misrepresented as being the original software.
1244 3. This notice may not be removed or altered from any source distribution.
1250 ============================================
1251 The package lmfit is distributed under the FreeBSD License:
1254 Copyright (c) 1980-1999 University of Chicago,
1255 as operator of Argonne National Laboratory
1256 Copyright (c) 2004-2015 Joachim Wuttke, Forschungszentrum Juelich GmbH
1258 All rights reserved.
1260 Redistribution and use in source and binary forms, with or without
1261 modification, are permitted provided that the following conditions are met:
1263 - Redistributions of source code must retain the above copyright notice,
1264 this list of conditions and the following disclaimer.
1265 - Redistributions in binary form must reproduce the above copyright notice,
1266 this list of conditions and the following disclaimer in the documentation
1267 and/or other materials provided with the distribution.
1269 This software is provided by the copyright holders and contributors "as is"
1270 and any express or implied warranties, including, but not limited to, the
1271 implied warranties of merchantability and fitness for a particular purpose
1272 are disclaimed. In no event shall the copyright holder or contributors
1273 be liable for any direct, indirect, incidental, special, exemplary, or
1274 consequential damages (including, but not limited to, procurement of
1275 substitute goods or services; loss of use, data, or profits; or business
1276 interruption) however caused and on any theory of liability, whether in
1277 contract, strict liability, or tort (including negligence or otherwise)
1278 arising in any way out of the use of this software, even if advised of the
1279 possibility of such damage.
1283 ============================================
1285 Files: src/external/clFFT/*
1287 The source for clFFT is licensed under the Apache License, Version 2.0
1291 Copyright 2013 Advanced Micro Devices, Inc.
1293 This product includes software developed at
1294 Advanced Micro Devices, Inc. (http://www.amd.com).
1297 15. Guidelines Support Library
1298 ============================================
1300 Files: src/gromacs/compat/pointers.h
1302 The source for the Guidelines Support Library (GSL) is licensed under
1306 Copyright (c) 2015 Microsoft Corporation. All rights reserved.
1308 This code is licensed under the MIT License (MIT).
1310 Permission is hereby granted, free of charge, to any person obtaining a copy
1311 of this software and associated documentation files (the "Software"), to deal
1312 in the Software without restriction, including without limitation the rights
1313 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
1314 of the Software, and to permit persons to whom the Software is furnished to do
1315 so, subject to the following conditions:
1317 The above copyright notice and this permission notice shall be included in all
1318 copies or substantial portions of the Software.
1320 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
1321 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
1322 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
1323 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
1324 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
1325 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
1329 17. P0009 reference implementation (Sandia Corporation)
1330 =======================================================
1332 Files: src/gromacs/mdspan/*
1335 Copyright (2014) Sandia Corporation
1337 Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
1338 the U.S. Government retains certain rights in this software.
1340 Kokkos is licensed under 3-clause BSD terms of use:
1342 Redistribution and use in source and binary forms, with or without
1343 modification, are permitted provided that the following conditions are
1346 1. Redistributions of source code must retain the above copyright
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1369 Questions? Contact Christian R. Trott (crtrott@sandia.gov)
1371 18. pybind11 release 2.2.4 from https://github.com/pybind/pybind11
1372 ==================================================================
1374 Files: python_packaging/src/external/pybind/*
1377 Copyright (c) 2016 Wenzel Jakob <wenzel.jakob@epfl.ch>, All rights reserved.
1379 Redistribution and use in source and binary forms, with or without
1380 modification, are permitted provided that the following conditions are met:
1382 1. Redistributions of source code must retain the above copyright notice, this
1383 list of conditions and the following disclaimer.
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1404 Please also refer to the file CONTRIBUTING.md, which clarifies licensing of
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1408 19. Reference implementation of std::string_view
1409 ================================================
1411 Used with minor modifications from commit bf5824916b6895ccab0dbc2431520ee3b6d4f27f of
1412 https://github.com/martinmoene/string-view-lite.git, which is licensed as
1415 Boost Software License - Version 1.0 - August 17th, 2003
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