2 # This file is part of the GROMACS molecular simulation package.
4 # Copyright (c) 2014,2015,2016,2017,2018, by the GROMACS development team, led by
5 # Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6 # and including many others, as listed in the AUTHORS file in the
7 # top-level source directory and at http://www.gromacs.org.
9 # GROMACS is free software; you can redistribute it and/or
10 # modify it under the terms of the GNU Lesser General Public License
11 # as published by the Free Software Foundation; either version 2.1
12 # of the License, or (at your option) any later version.
14 # GROMACS is distributed in the hope that it will be useful,
15 # but WITHOUT ANY WARRANTY; without even the implied warranty of
16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 # Lesser General Public License for more details.
19 # You should have received a copy of the GNU Lesser General Public
20 # License along with GROMACS; if not, see
21 # http://www.gnu.org/licenses, or write to the Free Software Foundation,
22 # Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
24 # If you want to redistribute modifications to GROMACS, please
25 # consider that scientific software is very special. Version
26 # control is crucial - bugs must be traceable. We will be happy to
27 # consider code for inclusion in the official distribution, but
28 # derived work must not be called official GROMACS. Details are found
29 # in the README & COPYING files - if they are missing, get the
30 # official version at http://www.gromacs.org.
32 # To help us fund GROMACS development, we humbly ask that you cite
33 # the research papers on the package. Check out http://www.gromacs.org.
35 # This directory provides a unified place for building all kinds of
36 # GROMACS documentation. This includes some "static" content (Doxygen
37 # code documentation, reference manual, install guide, old online HTML
38 # images), and content generated from the gmx program for the various
39 # tools (man and HTML pages). It also provides the "webpage" target,
40 # that combines all of the above (except man pages in man format) into
41 # a form suitable for automated deployment to the GROMACS website. It
42 # also provides the INSTALL file for the tarball.
44 # The webpage is mostly built by Sphinx. Variable values for Sphinx
45 # substitutions are configured by CMake (for things like version numbers),
46 # using gmx_configure_version_file(). This happens during build time instead
47 # of configure time, because 1) some of the version variables are only
48 # available during build time, and 2) we don't want to do all the Sphinx setup
49 # during configuration to save some time when not building the content.
50 # All the generated values get put into conf-vars.py (generated from
51 # conf-vars.py.cmakein), which in turn is included by the Sphinx configuration
54 set(SOURCE_MD5SUM "unknown" CACHE STRING
55 "MD5 sum of the source tarball, normally used only for the pre-release webpage build")
56 # REGRESSIONTEST_MD5SUM is set in cmake/gmxVersionInfo.cmake because it is used also in tests/CMakeLists.txt
57 mark_as_advanced(SOURCE_MD5SUM)
59 set(EXPECTED_DOXYGEN_VERSION 1.8.5)
61 set(EXPECTED_SPHINX_VERSION 1.6.1)
63 if (DEFINED PYTHON_EXECUTABLE)
64 # Keep quiet on subsequent runs of cmake
65 set(PythonInterp_FIND_QUIETLY ON)
67 find_package(PythonInterp 2.7)
68 find_package(Sphinx ${EXPECTED_SPHINX_VERSION} QUIET COMPONENTS pygments)
70 # Even if we aren't going to make the full webpage, set up to put all
71 # the documentation output in the same place, for convenience
72 set(HTML_OUTPUT_DIR "${CMAKE_CURRENT_BINARY_DIR}/html")
73 file(MAKE_DIRECTORY ${HTML_OUTPUT_DIR})
75 # Prepare directories for pdf/tex output
76 set(TEX_OUTPUT_DIR "${CMAKE_CURRENT_BINARY_DIR}/manual")
77 set(SPHINX_LATEX_FILE "${TEX_OUTPUT_DIR}/gromacs.tex")
78 file(MAKE_DIRECTORY ${TEX_OUTPUT_DIR})
80 # The directory from which man pages will be installed; if it remains
81 # empty, they will be silently skipped.
83 if (SOURCE_IS_SOURCE_DISTRIBUTION)
84 # When building from the tarball, install the bundled man pages
85 # (unless overridden).
86 set(MAN_PAGE_DIR ${CMAKE_CURRENT_SOURCE_DIR})
89 add_subdirectory(doxygen)
91 # We need to have all the Sphinx input files in a single directory, and
92 # since some of them are generated, we copy everything into the build tree,
94 set(SPHINX_INPUT_DIR ${CMAKE_CURRENT_BINARY_DIR}/sphinx-input)
95 set(SPHINX_EXTENSION_PATH ${CMAKE_CURRENT_SOURCE_DIR})
96 # As the manual build now depends also on Sphinx, the inclusion path needs
97 # to be set after we know the basic information for Sphinx.
98 add_subdirectory(manual)
99 if (SOURCE_MD5SUM STREQUAL "unknown")
100 # But for testing the webpage build (e.g. from the repo) we
101 # need a default value.
102 set(REGRESSIONTEST_MD5SUM_STRING "unknown")
104 # The real build of the webpage happens from the tarball, and
105 # this should be set to the matching MD5 sum.
106 set(REGRESSIONTEST_MD5SUM_STRING "${REGRESSIONTEST_MD5SUM}")
108 # The reference manual still contains the individual sections from the
109 # LaTeX document, with the files below grouped and annotated by chapter.
110 set(REFERENCEMANUAL_SPHINX_FILES_GENERAL
111 # Main index file, preface and introduction.
112 reference-manual/index.rst
113 reference-manual/preface.rst
114 reference-manual/introduction.rst
115 # Definitions and Units chapter
116 reference-manual/definitions.rst
118 reference-manual/topologies.rst
119 reference-manual/topologies/particle-type.rst
120 reference-manual/topologies/parameter-files.rst
121 reference-manual/topologies/molecule-definition.rst
122 reference-manual/topologies/constraint-algorithm-section.rst
123 reference-manual/topologies/pdb2gmx-input-files.rst
124 reference-manual/topologies/topology-file-formats.rst
125 reference-manual/topologies/force-field-organization.rst
126 # File formats chapter
127 reference-manual/file-formats.rst
128 # Run parameters and programs chapter
129 reference-manual/run-parameters.rst
130 # Implementation details chapter
131 reference-manual/details.rst
132 # Averages and fluctations chapter
133 reference-manual/averages.rst
135 reference-manual/references.rst
136 # PNG formated plot files that don't need to be converted into PNG
138 reference-manual/plots/peregrine.png
139 reference-manual/plots/adress.png
140 reference-manual/plots/plotje.png
141 reference-manual/plots/xvgr.png
143 set(REFERENCEMANUAL_SPHINX_FILES_WITH_IMAGES
145 reference-manual/algorithms.rst
146 reference-manual/algorithms/periodic-boundary-conditions.rst
147 reference-manual/algorithms/group-concept.rst
148 reference-manual/algorithms/molecular-dynamics.rst
149 reference-manual/algorithms/shell-molecular-dynamics.rst
150 reference-manual/algorithms/constraint-algorithms.rst
151 reference-manual/algorithms/simulated-annealing.rst
152 reference-manual/algorithms/stochastic-dynamics.rst
153 reference-manual/algorithms/brownian-dynamics.rst
154 reference-manual/algorithms/energy-minimization.rst
155 reference-manual/algorithms/normal-mode-analysis.rst
156 reference-manual/algorithms/free-energy-calculations.rst
157 reference-manual/algorithms/replica-exchange.rst
158 reference-manual/algorithms/essential-dynamics.rst
159 reference-manual/algorithms/expanded-ensemble.rst
160 reference-manual/algorithms/parallelization-domain-decomp.rst
161 # Interaction functions and force fields chapter
162 reference-manual/functions.rst
163 reference-manual/functions/bonded-interactions.rst
164 reference-manual/functions/force-field.rst
165 reference-manual/functions/free-energy-interactions.rst
166 reference-manual/functions/interaction-methods.rst
167 reference-manual/functions/long-range-electrostatics.rst
168 reference-manual/functions/long-range-vdw.rst
169 reference-manual/functions/nonbonded-interactions.rst
170 reference-manual/functions/polarization.rst
171 reference-manual/functions/restraints.rst
172 # Special topics chapter
173 reference-manual/special.rst
174 reference-manual/special/free-energy-implementation.rst
175 reference-manual/special/pulling.rst
176 reference-manual/special/awh.rst
177 reference-manual/special/enforced-rotation.rst
178 reference-manual/special/electric-fields.rst
179 reference-manual/special/comp-electrophys.rst
180 reference-manual/special/free-energy-pmf.rst
181 reference-manual/special/remove-fast-dgf.rst
182 reference-manual/special/viscosity-calculation.rst
183 reference-manual/special/tabulated-interaction-functions.rst
184 reference-manual/special/qmmm.rst
185 reference-manual/special/vmd-imd.rst
186 reference-manual/special/membrane-embedding.rst
188 reference-manual/analysis.rst
189 reference-manual/analysis/using-groups.rst
190 reference-manual/analysis/looking-at-trajectory.rst
191 reference-manual/analysis/general-properties.rst
192 reference-manual/analysis/radial-distribution-function.rst
193 reference-manual/analysis/correlation-function.rst
194 reference-manual/analysis/curve-fitting.rst
195 reference-manual/analysis/mean-square-displacement.rst
196 reference-manual/analysis/bond-angle-dihedral.rst
197 reference-manual/analysis/radius-of-gyration.rst
198 reference-manual/analysis/rmsd.rst
199 reference-manual/analysis/covariance-analysis.rst
200 reference-manual/analysis/dihedral-pca.rst
201 reference-manual/analysis/protein-related.rst
202 reference-manual/analysis/interface-related.rst)
203 # The image files have also been ordered by the respective
204 # chapter they are included in in the reference manual
205 set(REFERENCEMANUAL_IMAGE_FILES
207 reference-manual/plots/decomp.pdf
208 reference-manual/plots/dih.pdf
209 reference-manual/plots/drift-all.pdf
210 reference-manual/plots/f-angle.pdf
211 reference-manual/plots/f-bond.pdf
212 reference-manual/plots/fp-highres.pdf
213 reference-manual/plots/int-mat.pdf
214 reference-manual/plots/mdpar.pdf
215 reference-manual/plots/parsort.pdf
216 reference-manual/plots/ring.pdf
217 reference-manual/plots/shiftf.pdf
219 reference-manual/algorithms/plots/dd-cells.pdf
220 reference-manual/algorithms/plots/dd-tric.pdf
221 reference-manual/algorithms/plots/flowchart.pdf
222 reference-manual/algorithms/plots/free1.pdf
223 reference-manual/algorithms/plots/free2.pdf
224 reference-manual/algorithms/plots/leapfrog.pdf
225 reference-manual/algorithms/plots/lincs.pdf
226 reference-manual/algorithms/plots/maxwell.pdf
227 reference-manual/algorithms/plots/mpmd-pme.pdf
228 reference-manual/algorithms/plots/nstric.pdf
229 reference-manual/algorithms/plots/par-lincs2.pdf
230 reference-manual/algorithms/plots/pbctric.pdf
231 reference-manual/algorithms/plots/rhododec.pdf
232 reference-manual/algorithms/plots/truncoct.pdf
233 reference-manual/algorithms/plots/verlet-drift.pdf
234 # Interaction functions chapter
235 reference-manual/functions/plots/angle.pdf
236 reference-manual/functions/plots/bstretch.pdf
237 reference-manual/functions/plots/chain.pdf
238 reference-manual/functions/plots/dummies.pdf
239 reference-manual/functions/plots/f-bham.pdf
240 reference-manual/functions/plots/fbposres.pdf
241 reference-manual/functions/plots/f-dih.pdf
242 reference-manual/functions/plots/f-dr.pdf
243 reference-manual/functions/plots/fig-02.pdf
244 reference-manual/functions/plots/fig-04.pdf
245 reference-manual/functions/plots/f-imps.pdf
246 reference-manual/functions/plots/f-lj.pdf
247 reference-manual/functions/plots/f-morse.pdf
248 reference-manual/functions/plots/f-pr.pdf
249 reference-manual/functions/plots/f-rbs.pdf
250 reference-manual/functions/plots/ring-imp.pdf
251 reference-manual/functions/plots/softcore.pdf
252 reference-manual/functions/plots/subst-im.pdf
253 reference-manual/functions/plots/tetra-im.pdf
254 reference-manual/functions/plots/vcrf.pdf
255 reference-manual/functions/plots/vsite-4fdn.pdf
256 # Special topics chapter
257 reference-manual/special/plots/awh-invN.pdf
258 reference-manual/special/plots/awh-pmfs.pdf
259 reference-manual/special/plots/awh-sampleweights.pdf
260 reference-manual/special/plots/awh-traj.pdf
261 reference-manual/special/plots/compelsetup.pdf
262 reference-manual/special/plots/dumaro.pdf
263 reference-manual/special/plots/dumtypes.pdf
264 reference-manual/special/plots/equipotential.pdf
265 reference-manual/special/plots/field.pdf
266 reference-manual/special/plots/gaussians.pdf
267 reference-manual/special/plots/pulldirrel.pdf
268 reference-manual/special/plots/pull.pdf
269 reference-manual/special/plots/pullref.pdf
270 reference-manual/special/plots/rotation.pdf
272 reference-manual/analysis/plots/dih-def.pdf
273 reference-manual/analysis/plots/distm.pdf
274 reference-manual/analysis/plots/dssp.pdf
275 reference-manual/analysis/plots/hbond-insert.pdf
276 reference-manual/analysis/plots/hbond.pdf
277 reference-manual/analysis/plots/hpr-wheel.pdf
278 reference-manual/analysis/plots/msdwater.pdf
279 reference-manual/analysis/plots/ngmxdump.pdf
280 reference-manual/analysis/plots/phipsi.pdf
281 reference-manual/analysis/plots/rama.pdf
282 reference-manual/analysis/plots/rdfO-O.pdf
283 reference-manual/analysis/plots/rdf.pdf
284 reference-manual/analysis/plots/sgangle.pdf
286 set(SPHINX_SOURCE_FILES
291 dev-manual/build-system.rst
292 dev-manual/change-management.rst
293 dev-manual/commitstyle.rst
294 dev-manual/documentation-generation.rst
295 dev-manual/contribute.rst
296 dev-manual/doxygen.rst
297 dev-manual/error-handling.rst
298 dev-manual/formatting.rst
299 dev-manual/gmxtree.rst
300 dev-manual/includestyle.rst
302 dev-manual/jenkins.rst
303 dev-manual/language-features.rst
304 dev-manual/naming.rst
305 dev-manual/overview.rst
306 dev-manual/physical_validation.rst
307 dev-manual/redmine-states.png
308 dev-manual/relocatable-binaries.rst
309 dev-manual/reportstyle.rst
311 dev-manual/testutils.rst
313 dev-manual/uncrustify.rst
314 fragments/doxygen-links.rst
320 install-guide/index.rst
321 release-notes/index.rst
322 release-notes/2019/major/highlights.rst
323 release-notes/2019/major/features.rst
324 release-notes/2019/major/performance.rst
325 release-notes/2019/major/tools.rst
326 release-notes/2019/major/bugs-fixed.rst
327 release-notes/2019/major/removed-functionality.rst
328 release-notes/2019/major/deprecated-functionality.rst
329 release-notes/2019/major/portability.rst
330 release-notes/2019/major/miscellaneous.rst
331 release-notes/2018/2018.4.rst
332 release-notes/2018/2018.3.rst
333 release-notes/2018/2018.2.rst
334 release-notes/2018/2018.1.rst
335 release-notes/2018/major/highlights.rst
336 release-notes/2018/major/features.rst
337 release-notes/2018/major/performance.rst
338 release-notes/2018/major/tools.rst
339 release-notes/2018/major/bugs-fixed.rst
340 release-notes/2018/major/removed-features.rst
341 release-notes/2018/major/portability.rst
342 release-notes/2018/major/miscellaneous.rst
343 release-notes/2016/2016.5.rst
344 release-notes/2016/2016.4.rst
345 release-notes/2016/2016.3.rst
346 release-notes/2016/2016.2.rst
347 release-notes/2016/2016.1.rst
348 release-notes/2016/major/highlights.rst
349 release-notes/2016/major/new-features.rst
350 release-notes/2016/major/performance.rst
351 release-notes/2016/major/tools.rst
352 release-notes/2016/major/bugs-fixed.rst
353 release-notes/2016/major/removed-features.rst
354 release-notes/2016/major/miscellaneous.rst
355 release-notes/older/index.rst
356 # the entry for user-guide/index.rst should not appear here,
357 # as it will be included conditionally further down depending on
358 # if the documentation will be build with the full reference
360 user-guide/cmdline.rst
361 user-guide/cutoff-schemes.rst
362 user-guide/deprecation-policy.rst
363 user-guide/environment-variables.rst
365 user-guide/floating-point.rst
367 user-guide/force-fields.rst
368 user-guide/getting-started.rst
370 user-guide/managing-simulations.rst
371 user-guide/mdp-options.rst
372 user-guide/mdrun-features.rst
373 user-guide/mdrun-performance.rst
374 user-guide/run-time-errors.rst
375 user-guide/system-preparation.rst
376 user-guide/terminology.rst
379 include(SphinxMacros.cmake)
380 gmx_init_sphinx_setup(${SPHINX_INPUT_DIR})
382 # set temporary variables for doi inclusion
383 # into the manual, plain string + some wrapping
384 # for release builds, and dummy string for non-release
386 if("${GMX_MANUAL_DOI}" STREQUAL "")
387 # empty string means no doi, set dummy text
388 set(GMX_MANUAL_DOI_STRING "This is not a release build of GROMACS, so please reference")
389 set(GMX_MANUAL_DOI_STRING "${GMX_MANUAL_DOI_STRING} one of the GROMACS papers and the base release of the manual.")
391 # release version, set plain old boring string
392 set(GMX_MANUAL_DOI_STRING "Please reference this documentation as https://doi.org/${GMX_MANUAL_DOI}.")
394 # same for source doi, but modify the text
395 if("${GMX_SOURCE_DOI}" STREQUAL "")
396 # empty string means no release build
397 set(GMX_SOURCE_DOI_STRING "This is not a release build of GROMACS. Please reference one of the")
398 set(GMX_SOURCE_DOI_STRING "${GMX_SOURCE_DOI_STRING} GROMACS papers, as well as the base release that this version is built from.")
399 set(GMX_SOURCE_DOI_STRING "${GMX_SOURCE_DOI_STRING} Also, please state what modifcations have been performed or where the version")
400 set(GMX_SOURCE_DOI_STRING "${GMX_SOURCE_DOI_STRING} was sourced from.")
402 # release version, give them a doi url string
403 set(GMX_SOURCE_DOI_STRING "To cite the source code for this release, please cite")
404 set(GMX_SOURCE_DOI_STRING "${GMX_SOURCE_DOI_STRING} https://doi.org/${GMX_SOURCE_DOI}.")
407 if(IMAGE_CONVERT_POSSIBLE)
408 set(IMAGE_CONVERT_STRING "possible")
410 set(IMAGE_CONVERT_STRING "impossible")
413 set(SPHINX_CONFIG_VARS_FILE ${SPHINX_INPUT_DIR}/conf-vars.py)
414 gmx_configure_version_file(conf-vars.py.cmakein ${SPHINX_CONFIG_VARS_FILE}
416 SPHINX_EXTENSION_PATH RELENG_PATH
418 EXPECTED_DOXYGEN_VERSION
419 EXPECTED_SPHINX_VERSION
420 CMAKE_MINIMUM_REQUIRED_VERSION REQUIRED_CUDA_VERSION
421 REQUIRED_OPENCL_MIN_VERSION
422 REQUIRED_CUDA_COMPUTE_CAPABILITY REGRESSIONTEST_VERSION
423 SOURCE_MD5SUM REGRESSIONTEST_MD5SUM_STRING
424 GMX_TNG_MINIMUM_REQUIRED_VERSION
425 GMX_LMFIT_REQUIRED_VERSION
426 GMX_MANUAL_DOI_STRING
427 GMX_SOURCE_DOI_STRING
428 COMMENT "Configuring Sphinx configuration file")
429 gmx_add_sphinx_input_file(${SPHINX_CONFIG_VARS_FILE})
430 gmx_add_sphinx_source_files(FILES ${SPHINX_SOURCE_FILES})
431 if (EXISTS ${RELENG_PATH}/docs/FileList.cmake)
432 include(${RELENG_PATH}/docs/FileList.cmake)
433 gmx_add_sphinx_source_files(
434 FROM ${RELENG_PATH}/docs TO dev-manual/releng PREFIX releng/docs/
435 FILES ${RELENG_SPHINX_FILES})
437 gmx_add_sphinx_source_files(FILES
438 dev-manual/releng/index.rst
439 dev-manual/releng/jenkins-howto.rst
440 dev-manual/releng/jenkins-ui.rst
443 gmx_add_sphinx_source_files(
445 ${REFERENCEMANUAL_SPHINX_FILES_GENERAL})
446 if (IMAGE_CONVERT_POSSIBLE)
447 gmx_add_sphinx_source_files(
449 ${REFERENCEMANUAL_SPHINX_FILES_WITH_IMAGES}
450 ${REFERENCEMANUAL_IMAGE_FILES})
451 gmx_add_sphinx_image_conversion_files(
453 ${REFERENCEMANUAL_IMAGE_FILES})
455 gmx_add_sphinx_input_target(sphinx-input-rst)
456 gmx_add_sphinx_image_conversion_target(sphinx-image-conversion)
457 add_custom_target(sphinx-input)
458 add_dependencies(sphinx-input sphinx-input-rst sphinx-image-conversion)
459 # Remove other rst files from the build tree, since they confuse Sphinx.
460 # Skip generated files in onlinehelp/, and fragments.
461 # The latter do not cause issues with obsolete files, as they
462 # are not considered as Sphinx input files, but will only be
463 # included using an explicit .. include::.
464 gmx_remove_obsolete_sphinx_input_files("^(onlinehelp|fragments)/.*\\\\.rst$")
466 # TODO: Make this remove obsolete .rst files.
467 # TODO: This does not work in cross-compilation scenarios; disable up to
468 # the necessary level.
469 gmx_add_custom_output_target(sphinx-programs OUTPUT STAMP
470 COMMAND ${CMAKE_COMMAND} -E make_directory onlinehelp
471 COMMAND gmx -quiet help -export rst
473 WORKING_DIRECTORY ${SPHINX_INPUT_DIR}
474 COMMENT "Generating reStructuredText help")
475 # This dependency ensures that the directories exist before the
476 # executable tries to write things there.
477 add_dependencies(sphinx-programs sphinx-input)
479 # Make the INSTALL file for CPack for the tarball. This gets put
480 # into the tarball via the CPack rules below, which requires that
481 # the INSTALL file is in a separate directory by itself.
482 set(TEXT_INSTALL_GUIDE_OUTPUT_DIR "install-guide/text")
483 add_custom_target(install-guide
487 -w sphinx-install.log
488 -d ${CMAKE_CURRENT_BINARY_DIR}/install-guide/_doctrees
489 -c ${SPHINX_INPUT_DIR}
490 "${SPHINX_INPUT_DIR}/install-guide"
491 "${TEXT_INSTALL_GUIDE_OUTPUT_DIR}"
493 ${CMAKE_COMMAND} -E rename
494 ${TEXT_INSTALL_GUIDE_OUTPUT_DIR}/index.txt
495 ${TEXT_INSTALL_GUIDE_OUTPUT_DIR}/INSTALL
497 ${CMAKE_CURRENT_BINARY_DIR}
498 COMMENT "Building INSTALL with Sphinx"
501 add_dependencies(install-guide sphinx-input)
502 gmx_cpack_add_generated_source_directory(install-guide/text DESTINATION /)
504 # Sphinx cache with pickled ReST documents
505 set(SPHINX_CACHE_DIR "${CMAKE_CURRENT_BINARY_DIR}/_doctrees")
506 add_custom_target(webpage-sphinx
507 DEPENDS sphinx-programs
509 DEPENDS sphinx-image-conversion
511 ${CMAKE_COMMAND} -E make_directory ${SPHINX_INPUT_DIR}/_static
516 -d "${SPHINX_CACHE_DIR}"
517 "${SPHINX_INPUT_DIR}"
520 ${CMAKE_CURRENT_BINARY_DIR}
521 COMMENT "Building HTML documentation with Sphinx"
525 add_custom_target(man
530 -d ${SPHINX_CACHE_DIR}
533 ${CMAKE_CURRENT_BINARY_DIR}/man
534 COMMENT "Building man pages with Sphinx"
536 add_dependencies(man sphinx-input sphinx-programs)
538 # If requested, install the man pages built by the 'man' target
539 # created above. Nothing will be installed if the user did not
540 # manually build the target.
541 set(MAN_PAGE_DIR ${CMAKE_CURRENT_BINARY_DIR})
545 set(MANUAL_BUILD_IS_POSSIBLE OFF)
546 set(MANUAL_BUILD_NOT_POSSIBLE_REASON "Sphinx version ${EXPECTED_SPHINX_VERSION} is not available")
548 add_custom_target(webpage-sphinx
549 COMMAND ${CMAKE_COMMAND} -E echo
550 "HTML pages cannot be built because Sphinx version ${EXPECTED_SPHINX_VERSION} is not available"
552 add_custom_target(install-guide
553 COMMAND ${CMAKE_COMMAND} -E echo
554 "INSTALL cannot be built because Sphinx version ${EXPECTED_SPHINX_VERSION} is not available"
556 add_custom_target(man
557 COMMAND ${CMAKE_COMMAND} -E echo
558 "man pages cannot be built because Sphinx version ${EXPECTED_SPHINX_VERSION} is not available"
560 add_custom_target(sphinx-create-texman
561 COMMAND ${CMAKE_COMMAND} -E echo
562 "Cannot prepare LaTeX input files because Sphinx version ${EXPECTED_SPHINX_VERSION} is not available"
567 set(MAN_PAGE_DIR ${MAN_PAGE_DIR}/man)
568 # Trailing slash on directory is significant for
569 # install(DIRECTORY). See CMake docs.
570 install(DIRECTORY ${MAN_PAGE_DIR}/
571 DESTINATION ${CMAKE_INSTALL_MANDIR}/man1
572 COMPONENT man OPTIONAL
573 FILES_MATCHING PATTERN "*.1")
575 gmx_cpack_add_generated_source_directory(man)
577 # Determine whether we can build all the HTML pages and content linked from
578 # there. If not, construct an informative message if the user tries to
579 # build the target; most people never need to know, unless they've asked for
581 set(HTML_BUILD_IS_POSSIBLE ON)
582 set(HTML_BUILD_NOT_POSSIBLE_REASON)
583 set(HTML_BUILD_WARNINGS)
585 # Next, turn it off if any of the preconditions are unsatisified
586 if (NOT PYTHON_EXECUTABLE)
587 set(HTML_BUILD_IS_POSSIBLE OFF)
588 set(HTML_BUILD_NOT_POSSIBLE_REASON "Python is required")
589 elseif (NOT SPHINX_FOUND)
590 # Hardly anything gets built if Sphinx is not available, so don't bother.
591 set(HTML_BUILD_IS_POSSIBLE OFF)
592 set(HTML_BUILD_NOT_POSSIBLE_REASON "Sphinx version ${EXPECTED_SPHINX_VERSION} is required")
594 if (NOT MANUAL_BUILD_IS_POSSIBLE)
595 list(APPEND HTML_BUILD_WARNINGS
596 "Reference PDF manual was not built, so links to it do not work")
598 if (NOT DOXYGEN_EXECUTABLE)
599 list(APPEND HTML_BUILD_WARNINGS
600 "Doxygen was not available, so links to Doxygen do not work")
602 if (NOT DOXYGEN_DOT_EXECUTABLE)
603 list(APPEND HTML_BUILD_WARNINGS
604 "dot/graphviz was not found, so some graphs are missing")
607 if (HTML_BUILD_IS_POSSIBLE)
608 set(_webpage_target_properties)
609 if (HTML_BUILD_WARNINGS)
610 list(APPEND _webpage_target_properties
611 COMMAND ${CMAKE_COMMAND} -E echo
612 "webpage was built, but with the following limitations:")
613 foreach(_warning ${HTML_BUILD_WARNINGS})
614 list(APPEND _webpage_target_properties
615 COMMAND ${CMAKE_COMMAND} -E echo " - ${_warning}")
619 if (MANUAL_BUILD_IS_POSSIBLE)
620 # Make the PDF reference guide
621 # TODO Try to make the PDF arrive directly in ${HTML_OUTPUT_DIR}
622 # TODO Make this depend on the output of the manual build, so that the
623 # file actually gets copied multiple times.
624 set(_manual_target_location ${HTML_OUTPUT_DIR}/manual-${GMX_VERSION_STRING}.pdf)
626 OUTPUT ${_manual_target_location}
627 COMMAND ${CMAKE_COMMAND}
628 -E remove -f ${_manual_target_location}
629 COMMAND ${CMAKE_COMMAND}
630 -E copy ${CMAKE_CURRENT_BINARY_DIR}/manual/gromacs.pdf ${_manual_target_location}
633 list(APPEND _webpage_target_properties
634 DEPENDS ${_manual_target_location})
637 # The Doxygen configuration in doxygen/Doxyfile-common.cmakein
638 # makes all the Doxygen output directly in
639 # ${HTML_OUTPUT_DIR}/doxygen (and makes the directory if it needs
642 # Add a top-level target that builds everything related to the webpage,
643 # for Jenkins (and possibly others) to use
644 add_custom_target(webpage ${_webpage_target_properties}
645 COMMENT "Building webpage"
647 add_dependencies(webpage webpage-sphinx doxygen-all)
649 add_custom_target(webpage
650 COMMAND ${CMAKE_COMMAND} -E echo
651 "Cannot build webpage because ${HTML_BUILD_NOT_POSSIBLE_REASON}"
652 COMMENT "Webpage build not possible"