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7 * GROningen MAchine for Chemical Simulations
10 * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
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33 * Gyas ROwers Mature At Cryogenic Speed
49 /* Some window sizes */
55 typedef enum { eOSingle
, eOBond
, eOHBond
, eONR
} eObject
;
57 typedef enum { eVNormal
, eVSpecial
, eVHidden
, evNR
} eVisible
;
59 enum { eBThin
, eBFat
, eBVeryFat
, eBSpheres
, eBNR
};
61 enum { esbNone
, esbRect
, esbTri
, esbTrunc
, esbNR
};
64 t_windata wd
; /* Mol window structure */
65 gmx_bool bShowHydrogen
; /* Show Hydrogens? */
66 int bond_type
; /* Show one of the above bondtypes */
67 int ePBC
; /* PBC type */
68 int boxtype
; /* Rectangular, Tric, TruncOct (display)*/
69 int realbox
; /* Property of the real box */
73 eObject eO
; /* The type of object */
74 eVisible eV
; /* Visibility status of the object */
75 unsigned long color
; /* The color (only when eV==evSpecial) */
76 atom_id ai
,aj
; /* The atom_id for i (and j if bond) */
77 real z
; /* The Z-coordinate for depht cueing */
81 t_blocka
*grps
; /* Blocks with atom numbers */
82 char **grpnames
; /* The names of the groups */
83 gmx_bool
*bDisable
; /* Group indexes out of natoms in TRX */
84 gmx_bool
*bShow
; /* Show a group ? */
88 * t_manager structure:
90 * This structure manages the display area for the gmx program.
91 * It reads the status file and sends messages when windows need to
98 int natom
; /* The number of atoms */
99 t_topology top
; /* topology */
101 real time
; /* The actual time */
102 rvec
*x
; /* The coordinates */
103 iv2
*ix
; /* The coordinates after projection */
104 real
*zz
; /* Z-coords */
105 matrix box
; /* The box */
106 int nobj
; /* The number of objects */
107 t_object
*obj
; /* The objects on screen */
108 gmx_bool
*bHydro
; /* TRUE for hydrogen atoms */
109 gmx_bool
*bLabel
; /* Show a label on atom i? */
110 char **szLab
; /* Array of pointers to labels */
111 unsigned long *col
; /* The colour of the atoms */
112 int *size
; /* The size of the atoms */
113 real
*vdw
; /* The VDWaals radius of the atoms */
114 gmx_bool
*bVis
; /* visibility of atoms */
115 gmx_bool bPbc
; /* Remove Periodic boundary */
116 gmx_bool bAnimate
; /* Animation going on? */
117 gmx_bool bEof
; /* End of file reached? */
118 gmx_bool bStop
; /* Stopped by user? */
119 gmx_bool bSort
; /* Sort the coordinates */
120 gmx_bool bPlus
; /* Draw plus for single atom */
121 int nSkip
; /* Skip n steps after each frame */
122 int nWait
; /* Wait n ms after each frame */
123 gmx_rmpbc_t gpbc
; /* For removing peridiocity */
125 t_windata wd
; /* The manager subwindow */
126 t_windata title
; /* Title window */
127 t_3dview
*view
; /* The 3d struct */
128 t_molwin
*molw
; /* The molecule window */
129 t_butbox
*vbox
; /* The video box */
130 t_butbox
*bbox
; /* The button box */
131 t_legendwin
*legw
; /* The legend window */
133 output_env_t oenv
; /* output env data */
136 extern t_manager
*init_man(t_x11
*x11
,Window Parent
,
137 int x
,int y
,int width
,int height
,
138 unsigned long fg
,unsigned long bg
,
139 int ePBC
,matrix box
, const output_env_t oenv
);
140 /* Initiate the display manager */
142 extern void move_man(t_x11
*x11
,t_manager
*man
,int width
,int height
);
143 /* Set the right size for this window */
145 extern void step_message(t_x11
*x11
,t_manager
*man
);
146 /* Send a message to the manager */
148 extern void set_file(t_x11
*x11
,t_manager
*man
,const char *trajectory
,
150 /* Read a new trajectory and topology */
152 extern void map_man(t_x11
*x11
,t_manager
*man
);
154 extern void move_man(t_x11
*x11
,t_manager
*man
,int width
,int height
);
156 extern gmx_bool
toggle_animate (t_x11
*x11
,t_manager
*man
);
158 extern gmx_bool
toggle_pbc (t_manager
*man
);
160 extern void no_labels(t_x11
*x11
,t_manager
*man
);
161 /* Turn off all labels */
163 extern void done_man(t_x11
*x11
,t_manager
*man
);
164 /* Clean up man struct */
166 extern void draw_mol(t_x11
*x11
,t_manager
*man
);
168 extern void create_visibility(t_manager
*man
);
170 extern void do_filter(t_x11
*x11
,t_manager
*man
,t_filter
*filter
);