3 ; Col 2: Type of angles
4 ; Col 3: Type of proper dihedrals
5 ; Col 4: Type of improper dihedrals
6 ; Col 5: Generate all dihedrals if 1, only heavy atoms of 0.
7 ; Col 6: Number of excluded neighbors for nonbonded interactions
8 ; Col 7: Generate 1,4 interactions between pairs of hydrogens if 1
9 ; Col 8: Remove impropers over the same bond as a proper if it is 1
10 ; bonds angles dihedrals impropers all_dihedrals nrexcl HH14 RemoveDih
13 ; now: water, ions, urea, terminal caps, AA's and terminal AA's
36 [ IB+ ] ; big positive ion
76 [ URE ] ; urea added in by EJS, resp charges by Jim Caldwell
158 ; Next are non-terminal AA's
314 C CA CB CG torsion_LEU_C_CA_CB_CG_mult1
315 C CA CB CG torsion_LEU_C_CA_CB_CG_mult2
316 C CA CB CG torsion_LEU_C_CA_CB_CG_mult3
363 N CA CB CG2 torsion_ILE_N_CA_CB_CG2_mult1
364 N CA CB CG2 torsion_ILE_N_CA_CB_CG2_mult2
440 C CA CB CG torsion_ASN_C_CA_CB_CG_mult1
441 C CA CB CG torsion_ASN_C_CA_CB_CG_mult2
442 C CA CB CG torsion_ASN_C_CA_CB_CG_mult3
443 C CA CB CG torsion_ASN_C_CA_CB_CG_mult4
444 C CA CB CG torsion_ASN_C_CA_CB_CG_mult5
445 C CA CB CG torsion_ASN_C_CA_CB_CG_mult6
446 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult1
447 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult2
448 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult3
449 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult4
450 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult5
451 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult6
941 N CA CB CG torsion_ASP_N_CA_CB_CG_mult1
942 N CA CB CG torsion_ASP_N_CA_CB_CG_mult2
943 N CA CB CG torsion_ASP_N_CA_CB_CG_mult3
944 N CA CB CG torsion_ASP_N_CA_CB_CG_mult4
945 N CA CB CG torsion_ASP_N_CA_CB_CG_mult5
946 N CA CB CG torsion_ASP_N_CA_CB_CG_mult6
947 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult1
948 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult2
949 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult3
950 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult4
951 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult5
952 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult6
953 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult1
954 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult2
955 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult3
956 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult4
957 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult5
958 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult6
1015 [ ORN ] ; charges taken from amber99.prm of tinker 4.0
1060 [ DAB ] ; sidechain charges fit to maintain heavy atom charge group trend LYS -> ORN -> DAB
1184 [ HYP ] ; S Park, R J Radmer, T E Klein & V S Pande (submitted).
1373 ; non-terminal acidic AA's
1616 C CA CB CG torsion_LEU_C_CA_CB_CG_mult1
1617 C CA CB CG torsion_LEU_C_CA_CB_CG_mult2
1618 C CA CB CG torsion_LEU_C_CA_CB_CG_mult3
1667 N CA CB CG2 torsion_ILE_N_CA_CB_CG2_mult1
1668 B CA CB CG2 torsion_ILE_N_CA_CB_CG2_mult2
1748 C CA CB CG torsion_ASN_C_CA_CB_CG_mult1
1749 C CA CB CG torsion_ASN_C_CA_CB_CG_mult2
1750 C CA CB CG torsion_ASN_C_CA_CB_CG_mult3
1751 C CA CB CG torsion_ASN_C_CA_CB_CG_mult4
1752 C CA CB CG torsion_ASN_C_CA_CB_CG_mult5
1753 C CA CB CG torsion_ASN_C_CA_CB_CG_mult6
1754 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult1
1755 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult2
1756 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult3
1757 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult4
1758 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult5
1759 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult6
2269 N CA CB CG torsion_ASP_N_CA_CB_CG_mult1
2270 N CA CB CG torsion_ASP_N_CA_CB_CG_mult2
2271 N CA CB CG torsion_ASP_N_CA_CB_CG_mult3
2272 N CA CB CG torsion_ASP_N_CA_CB_CG_mult4
2273 N CA CB CG torsion_ASP_N_CA_CB_CG_mult5
2274 N CA CB CG torsion_ASP_N_CA_CB_CG_mult6
2275 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult1
2276 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult2
2277 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult3
2278 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult4
2279 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult5
2280 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult6
2281 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult1
2282 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult2
2283 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult3
2284 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult4
2285 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult5
2286 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult6
2658 C CA CB CG torsion_LEU_C_CA_CB_CG_mult1
2659 C CA CB CG torsion_LEU_C_CA_CB_CG_mult2
2660 C CA CB CG torsion_LEU_C_CA_CB_CG_mult3
2710 N CA CB CG2 torsion_ILE_N_CA_CB_CG2_mult1
2711 B CA CB CG2 torsion_ILE_N_CA_CB_CG2_mult2
2793 C CA CB CG torsion_ASN_C_CA_CB_CG_mult1
2794 C CA CB CG torsion_ASN_C_CA_CB_CG_mult2
2795 C CA CB CG torsion_ASN_C_CA_CB_CG_mult3
2796 C CA CB CG torsion_ASN_C_CA_CB_CG_mult4
2797 C CA CB CG torsion_ASN_C_CA_CB_CG_mult5
2798 C CA CB CG torsion_ASN_C_CA_CB_CG_mult6
2799 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult1
2800 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult2
2801 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult3
2802 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult4
2803 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult5
2804 CA CB CG ND2 torsion_ASN_CA_CB_CG_ND2_mult6
3325 N CA CB CG torsion_ASP_N_CA_CB_CG_mult1
3326 N CA CB CG torsion_ASP_N_CA_CB_CG_mult2
3327 N CA CB CG torsion_ASP_N_CA_CB_CG_mult3
3328 N CA CB CG torsion_ASP_N_CA_CB_CG_mult4
3329 N CA CB CG torsion_ASP_N_CA_CB_CG_mult5
3330 N CA CB CG torsion_ASP_N_CA_CB_CG_mult6
3331 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult1
3332 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult2
3333 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult3
3334 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult4
3335 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult5
3336 CA CB CG OD1 torsion_ASP_CA_CB_CG_OD_mult6
3337 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult1
3338 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult2
3339 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult3
3340 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult4
3341 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult5
3342 CA CB CG OD2 torsion_ASP_CA_CB_CG_OD_mult6