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52 /* Some window sizes */
58 typedef enum { eOSingle
, eOBond
, eOHBond
, eONR
} eObject
;
60 typedef enum { eVNormal
, eVSpecial
, eVHidden
, evNR
} eVisible
;
62 enum { eBThin
, eBFat
, eBVeryFat
, eBSpheres
, eBNR
};
64 enum { esbNone
, esbRect
, esbTri
, esbTrunc
, esbNR
};
67 t_windata wd
; /* Mol window structure */
68 gmx_bool bShowHydrogen
; /* Show Hydrogens? */
69 int bond_type
; /* Show one of the above bondtypes */
70 int ePBC
; /* PBC type */
71 int boxtype
; /* Rectangular, Tric, TruncOct (display)*/
72 int realbox
; /* Property of the real box */
76 eObject eO
; /* The type of object */
77 eVisible eV
; /* Visibility status of the object */
78 unsigned long color
; /* The color (only when eV==evSpecial) */
79 atom_id ai
,aj
; /* The atom_id for i (and j if bond) */
80 real z
; /* The Z-coordinate for depht cueing */
84 t_blocka
*grps
; /* Blocks with atom numbers */
85 char **grpnames
; /* The names of the groups */
86 gmx_bool
*bDisable
; /* Group indexes out of natoms in TRX */
87 gmx_bool
*bShow
; /* Show a group ? */
91 * t_manager structure:
93 * This structure manages the display area for the gmx program.
94 * It reads the status file and sends messages when windows need to
100 const char *trajfile
;
101 int natom
; /* The number of atoms */
102 t_topology top
; /* topology */
104 real time
; /* The actual time */
105 rvec
*x
; /* The coordinates */
106 iv2
*ix
; /* The coordinates after projection */
107 real
*zz
; /* Z-coords */
108 matrix box
; /* The box */
109 int nobj
; /* The number of objects */
110 t_object
*obj
; /* The objects on screen */
111 gmx_bool
*bHydro
; /* TRUE for hydrogen atoms */
112 gmx_bool
*bLabel
; /* Show a label on atom i? */
113 char **szLab
; /* Array of pointers to labels */
114 unsigned long *col
; /* The colour of the atoms */
115 int *size
; /* The size of the atoms */
116 real
*vdw
; /* The VDWaals radius of the atoms */
117 gmx_bool
*bVis
; /* visibility of atoms */
118 gmx_bool bPbc
; /* Remove Periodic boundary */
119 gmx_bool bAnimate
; /* Animation going on? */
120 gmx_bool bEof
; /* End of file reached? */
121 gmx_bool bStop
; /* Stopped by user? */
122 gmx_bool bSort
; /* Sort the coordinates */
123 gmx_bool bPlus
; /* Draw plus for single atom */
124 int nSkip
; /* Skip n steps after each frame */
125 int nWait
; /* Wait n ms after each frame */
126 gmx_rmpbc_t gpbc
; /* For removing peridiocity */
128 t_windata wd
; /* The manager subwindow */
129 t_windata title
; /* Title window */
130 t_3dview
*view
; /* The 3d struct */
131 t_molwin
*molw
; /* The molecule window */
132 t_butbox
*vbox
; /* The video box */
133 t_butbox
*bbox
; /* The button box */
134 t_legendwin
*legw
; /* The legend window */
136 output_env_t oenv
; /* output env data */
139 extern t_manager
*init_man(t_x11
*x11
,Window Parent
,
140 int x
,int y
,int width
,int height
,
141 unsigned long fg
,unsigned long bg
,
142 int ePBC
,matrix box
, const output_env_t oenv
);
143 /* Initiate the display manager */
145 extern void move_man(t_x11
*x11
,t_manager
*man
,int width
,int height
);
146 /* Set the right size for this window */
148 extern void step_message(t_x11
*x11
,t_manager
*man
);
149 /* Send a message to the manager */
151 extern void set_file(t_x11
*x11
,t_manager
*man
,const char *trajectory
,
153 /* Read a new trajectory and topology */
155 extern void map_man(t_x11
*x11
,t_manager
*man
);
157 extern void move_man(t_x11
*x11
,t_manager
*man
,int width
,int height
);
159 extern gmx_bool
toggle_animate (t_x11
*x11
,t_manager
*man
);
161 extern gmx_bool
toggle_pbc (t_manager
*man
);
163 extern void no_labels(t_x11
*x11
,t_manager
*man
);
164 /* Turn off all labels */
166 extern void done_man(t_x11
*x11
,t_manager
*man
);
167 /* Clean up man struct */
169 extern void draw_mol(t_x11
*x11
,t_manager
*man
);
171 extern void create_visibility(t_manager
*man
);
173 extern void do_filter(t_x11
*x11
,t_manager
*man
,t_filter
*filter
);