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36 * Note: this file was generated by the GROMACS c kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
48 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_VF_c
49 * Electrostatics interaction: Coulomb
50 * VdW interaction: CubicSplineTable
51 * Geometry: Water4-Particle
52 * Calculate force/pot: PotentialAndForce
55 nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_VF_c
56 (t_nblist
* gmx_restrict nlist
,
57 rvec
* gmx_restrict xx
,
58 rvec
* gmx_restrict ff
,
59 struct t_forcerec
* gmx_restrict fr
,
60 t_mdatoms
* gmx_restrict mdatoms
,
61 nb_kernel_data_t gmx_unused
* gmx_restrict kernel_data
,
62 t_nrnb
* gmx_restrict nrnb
)
64 int i_shift_offset
,i_coord_offset
,j_coord_offset
;
65 int j_index_start
,j_index_end
;
66 int nri
,inr
,ggid
,iidx
,jidx
,jnr
,outeriter
,inneriter
;
67 real shX
,shY
,shZ
,tx
,ty
,tz
,fscal
,rcutoff
,rcutoff2
;
68 int *iinr
,*jindex
,*jjnr
,*shiftidx
,*gid
;
69 real
*shiftvec
,*fshift
,*x
,*f
;
71 real ix0
,iy0
,iz0
,fix0
,fiy0
,fiz0
,iq0
,isai0
;
73 real ix1
,iy1
,iz1
,fix1
,fiy1
,fiz1
,iq1
,isai1
;
75 real ix2
,iy2
,iz2
,fix2
,fiy2
,fiz2
,iq2
,isai2
;
77 real ix3
,iy3
,iz3
,fix3
,fiy3
,fiz3
,iq3
,isai3
;
79 real jx0
,jy0
,jz0
,fjx0
,fjy0
,fjz0
,jq0
,isaj0
;
80 real dx00
,dy00
,dz00
,rsq00
,rinv00
,rinvsq00
,r00
,qq00
,c6_00
,c12_00
,cexp1_00
,cexp2_00
;
81 real dx10
,dy10
,dz10
,rsq10
,rinv10
,rinvsq10
,r10
,qq10
,c6_10
,c12_10
,cexp1_10
,cexp2_10
;
82 real dx20
,dy20
,dz20
,rsq20
,rinv20
,rinvsq20
,r20
,qq20
,c6_20
,c12_20
,cexp1_20
,cexp2_20
;
83 real dx30
,dy30
,dz30
,rsq30
,rinv30
,rinvsq30
,r30
,qq30
,c6_30
,c12_30
,cexp1_30
,cexp2_30
;
84 real velec
,felec
,velecsum
,facel
,crf
,krf
,krf2
;
87 real rinvsix
,rvdw
,vvdw
,vvdw6
,vvdw12
,fvdw
,fvdw6
,fvdw12
,vvdwsum
,br
,vvdwexp
,sh_vdw_invrcut6
;
91 real rt
,vfeps
,vftabscale
,Y
,F
,Geps
,Heps2
,Fp
,VV
,FF
;
99 jindex
= nlist
->jindex
;
101 shiftidx
= nlist
->shift
;
103 shiftvec
= fr
->shift_vec
[0];
104 fshift
= fr
->fshift
[0];
105 facel
= fr
->ic
->epsfac
;
106 charge
= mdatoms
->chargeA
;
107 nvdwtype
= fr
->ntype
;
109 vdwtype
= mdatoms
->typeA
;
111 vftab
= kernel_data
->table_vdw
->data
;
112 vftabscale
= kernel_data
->table_vdw
->scale
;
114 /* Setup water-specific parameters */
115 inr
= nlist
->iinr
[0];
116 iq1
= facel
*charge
[inr
+1];
117 iq2
= facel
*charge
[inr
+2];
118 iq3
= facel
*charge
[inr
+3];
119 vdwioffset0
= 2*nvdwtype
*vdwtype
[inr
+0];
124 /* Start outer loop over neighborlists */
125 for(iidx
=0; iidx
<nri
; iidx
++)
127 /* Load shift vector for this list */
128 i_shift_offset
= DIM
*shiftidx
[iidx
];
129 shX
= shiftvec
[i_shift_offset
+XX
];
130 shY
= shiftvec
[i_shift_offset
+YY
];
131 shZ
= shiftvec
[i_shift_offset
+ZZ
];
133 /* Load limits for loop over neighbors */
134 j_index_start
= jindex
[iidx
];
135 j_index_end
= jindex
[iidx
+1];
137 /* Get outer coordinate index */
139 i_coord_offset
= DIM
*inr
;
141 /* Load i particle coords and add shift vector */
142 ix0
= shX
+ x
[i_coord_offset
+DIM
*0+XX
];
143 iy0
= shY
+ x
[i_coord_offset
+DIM
*0+YY
];
144 iz0
= shZ
+ x
[i_coord_offset
+DIM
*0+ZZ
];
145 ix1
= shX
+ x
[i_coord_offset
+DIM
*1+XX
];
146 iy1
= shY
+ x
[i_coord_offset
+DIM
*1+YY
];
147 iz1
= shZ
+ x
[i_coord_offset
+DIM
*1+ZZ
];
148 ix2
= shX
+ x
[i_coord_offset
+DIM
*2+XX
];
149 iy2
= shY
+ x
[i_coord_offset
+DIM
*2+YY
];
150 iz2
= shZ
+ x
[i_coord_offset
+DIM
*2+ZZ
];
151 ix3
= shX
+ x
[i_coord_offset
+DIM
*3+XX
];
152 iy3
= shY
+ x
[i_coord_offset
+DIM
*3+YY
];
153 iz3
= shZ
+ x
[i_coord_offset
+DIM
*3+ZZ
];
168 /* Reset potential sums */
172 /* Start inner kernel loop */
173 for(jidx
=j_index_start
; jidx
<j_index_end
; jidx
++)
175 /* Get j neighbor index, and coordinate index */
177 j_coord_offset
= DIM
*jnr
;
179 /* load j atom coordinates */
180 jx0
= x
[j_coord_offset
+DIM
*0+XX
];
181 jy0
= x
[j_coord_offset
+DIM
*0+YY
];
182 jz0
= x
[j_coord_offset
+DIM
*0+ZZ
];
184 /* Calculate displacement vector */
198 /* Calculate squared distance and things based on it */
199 rsq00
= dx00
*dx00
+dy00
*dy00
+dz00
*dz00
;
200 rsq10
= dx10
*dx10
+dy10
*dy10
+dz10
*dz10
;
201 rsq20
= dx20
*dx20
+dy20
*dy20
+dz20
*dz20
;
202 rsq30
= dx30
*dx30
+dy30
*dy30
+dz30
*dz30
;
204 rinv00
= 1.0/sqrt(rsq00
);
205 rinv10
= 1.0/sqrt(rsq10
);
206 rinv20
= 1.0/sqrt(rsq20
);
207 rinv30
= 1.0/sqrt(rsq30
);
209 rinvsq10
= rinv10
*rinv10
;
210 rinvsq20
= rinv20
*rinv20
;
211 rinvsq30
= rinv30
*rinv30
;
213 /* Load parameters for j particles */
215 vdwjidx0
= 2*vdwtype
[jnr
+0];
217 /**************************
218 * CALCULATE INTERACTIONS *
219 **************************/
223 c6_00
= vdwparam
[vdwioffset0
+vdwjidx0
];
224 c12_00
= vdwparam
[vdwioffset0
+vdwjidx0
+1];
226 /* Calculate table index by multiplying r with table scale and truncate to integer */
232 /* CUBIC SPLINE TABLE DISPERSION */
236 Geps
= vfeps
*vftab
[vfitab
+2];
237 Heps2
= vfeps
*vfeps
*vftab
[vfitab
+3];
241 FF
= Fp
+Geps
+2.0*Heps2
;
244 /* CUBIC SPLINE TABLE REPULSION */
247 Geps
= vfeps
*vftab
[vfitab
+6];
248 Heps2
= vfeps
*vfeps
*vftab
[vfitab
+7];
252 FF
= Fp
+Geps
+2.0*Heps2
;
255 fvdw
= -(fvdw6
+fvdw12
)*vftabscale
*rinv00
;
257 /* Update potential sums from outer loop */
262 /* Calculate temporary vectorial force */
267 /* Update vectorial force */
271 f
[j_coord_offset
+DIM
*0+XX
] -= tx
;
272 f
[j_coord_offset
+DIM
*0+YY
] -= ty
;
273 f
[j_coord_offset
+DIM
*0+ZZ
] -= tz
;
275 /**************************
276 * CALCULATE INTERACTIONS *
277 **************************/
281 /* COULOMB ELECTROSTATICS */
283 felec
= velec
*rinvsq10
;
285 /* Update potential sums from outer loop */
290 /* Calculate temporary vectorial force */
295 /* Update vectorial force */
299 f
[j_coord_offset
+DIM
*0+XX
] -= tx
;
300 f
[j_coord_offset
+DIM
*0+YY
] -= ty
;
301 f
[j_coord_offset
+DIM
*0+ZZ
] -= tz
;
303 /**************************
304 * CALCULATE INTERACTIONS *
305 **************************/
309 /* COULOMB ELECTROSTATICS */
311 felec
= velec
*rinvsq20
;
313 /* Update potential sums from outer loop */
318 /* Calculate temporary vectorial force */
323 /* Update vectorial force */
327 f
[j_coord_offset
+DIM
*0+XX
] -= tx
;
328 f
[j_coord_offset
+DIM
*0+YY
] -= ty
;
329 f
[j_coord_offset
+DIM
*0+ZZ
] -= tz
;
331 /**************************
332 * CALCULATE INTERACTIONS *
333 **************************/
337 /* COULOMB ELECTROSTATICS */
339 felec
= velec
*rinvsq30
;
341 /* Update potential sums from outer loop */
346 /* Calculate temporary vectorial force */
351 /* Update vectorial force */
355 f
[j_coord_offset
+DIM
*0+XX
] -= tx
;
356 f
[j_coord_offset
+DIM
*0+YY
] -= ty
;
357 f
[j_coord_offset
+DIM
*0+ZZ
] -= tz
;
359 /* Inner loop uses 139 flops */
361 /* End of innermost loop */
364 f
[i_coord_offset
+DIM
*0+XX
] += fix0
;
365 f
[i_coord_offset
+DIM
*0+YY
] += fiy0
;
366 f
[i_coord_offset
+DIM
*0+ZZ
] += fiz0
;
370 f
[i_coord_offset
+DIM
*1+XX
] += fix1
;
371 f
[i_coord_offset
+DIM
*1+YY
] += fiy1
;
372 f
[i_coord_offset
+DIM
*1+ZZ
] += fiz1
;
376 f
[i_coord_offset
+DIM
*2+XX
] += fix2
;
377 f
[i_coord_offset
+DIM
*2+YY
] += fiy2
;
378 f
[i_coord_offset
+DIM
*2+ZZ
] += fiz2
;
382 f
[i_coord_offset
+DIM
*3+XX
] += fix3
;
383 f
[i_coord_offset
+DIM
*3+YY
] += fiy3
;
384 f
[i_coord_offset
+DIM
*3+ZZ
] += fiz3
;
388 fshift
[i_shift_offset
+XX
] += tx
;
389 fshift
[i_shift_offset
+YY
] += ty
;
390 fshift
[i_shift_offset
+ZZ
] += tz
;
393 /* Update potential energies */
394 kernel_data
->energygrp_elec
[ggid
] += velecsum
;
395 kernel_data
->energygrp_vdw
[ggid
] += vvdwsum
;
397 /* Increment number of inner iterations */
398 inneriter
+= j_index_end
- j_index_start
;
400 /* Outer loop uses 41 flops */
403 /* Increment number of outer iterations */
406 /* Update outer/inner flops */
408 inc_nrnb(nrnb
,eNR_NBKERNEL_ELEC_VDW_W4_VF
,outeriter
*41 + inneriter
*139);
411 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_F_c
412 * Electrostatics interaction: Coulomb
413 * VdW interaction: CubicSplineTable
414 * Geometry: Water4-Particle
415 * Calculate force/pot: Force
418 nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_F_c
419 (t_nblist
* gmx_restrict nlist
,
420 rvec
* gmx_restrict xx
,
421 rvec
* gmx_restrict ff
,
422 struct t_forcerec
* gmx_restrict fr
,
423 t_mdatoms
* gmx_restrict mdatoms
,
424 nb_kernel_data_t gmx_unused
* gmx_restrict kernel_data
,
425 t_nrnb
* gmx_restrict nrnb
)
427 int i_shift_offset
,i_coord_offset
,j_coord_offset
;
428 int j_index_start
,j_index_end
;
429 int nri
,inr
,ggid
,iidx
,jidx
,jnr
,outeriter
,inneriter
;
430 real shX
,shY
,shZ
,tx
,ty
,tz
,fscal
,rcutoff
,rcutoff2
;
431 int *iinr
,*jindex
,*jjnr
,*shiftidx
,*gid
;
432 real
*shiftvec
,*fshift
,*x
,*f
;
434 real ix0
,iy0
,iz0
,fix0
,fiy0
,fiz0
,iq0
,isai0
;
436 real ix1
,iy1
,iz1
,fix1
,fiy1
,fiz1
,iq1
,isai1
;
438 real ix2
,iy2
,iz2
,fix2
,fiy2
,fiz2
,iq2
,isai2
;
440 real ix3
,iy3
,iz3
,fix3
,fiy3
,fiz3
,iq3
,isai3
;
442 real jx0
,jy0
,jz0
,fjx0
,fjy0
,fjz0
,jq0
,isaj0
;
443 real dx00
,dy00
,dz00
,rsq00
,rinv00
,rinvsq00
,r00
,qq00
,c6_00
,c12_00
,cexp1_00
,cexp2_00
;
444 real dx10
,dy10
,dz10
,rsq10
,rinv10
,rinvsq10
,r10
,qq10
,c6_10
,c12_10
,cexp1_10
,cexp2_10
;
445 real dx20
,dy20
,dz20
,rsq20
,rinv20
,rinvsq20
,r20
,qq20
,c6_20
,c12_20
,cexp1_20
,cexp2_20
;
446 real dx30
,dy30
,dz30
,rsq30
,rinv30
,rinvsq30
,r30
,qq30
,c6_30
,c12_30
,cexp1_30
,cexp2_30
;
447 real velec
,felec
,velecsum
,facel
,crf
,krf
,krf2
;
450 real rinvsix
,rvdw
,vvdw
,vvdw6
,vvdw12
,fvdw
,fvdw6
,fvdw12
,vvdwsum
,br
,vvdwexp
,sh_vdw_invrcut6
;
454 real rt
,vfeps
,vftabscale
,Y
,F
,Geps
,Heps2
,Fp
,VV
,FF
;
462 jindex
= nlist
->jindex
;
464 shiftidx
= nlist
->shift
;
466 shiftvec
= fr
->shift_vec
[0];
467 fshift
= fr
->fshift
[0];
468 facel
= fr
->ic
->epsfac
;
469 charge
= mdatoms
->chargeA
;
470 nvdwtype
= fr
->ntype
;
472 vdwtype
= mdatoms
->typeA
;
474 vftab
= kernel_data
->table_vdw
->data
;
475 vftabscale
= kernel_data
->table_vdw
->scale
;
477 /* Setup water-specific parameters */
478 inr
= nlist
->iinr
[0];
479 iq1
= facel
*charge
[inr
+1];
480 iq2
= facel
*charge
[inr
+2];
481 iq3
= facel
*charge
[inr
+3];
482 vdwioffset0
= 2*nvdwtype
*vdwtype
[inr
+0];
487 /* Start outer loop over neighborlists */
488 for(iidx
=0; iidx
<nri
; iidx
++)
490 /* Load shift vector for this list */
491 i_shift_offset
= DIM
*shiftidx
[iidx
];
492 shX
= shiftvec
[i_shift_offset
+XX
];
493 shY
= shiftvec
[i_shift_offset
+YY
];
494 shZ
= shiftvec
[i_shift_offset
+ZZ
];
496 /* Load limits for loop over neighbors */
497 j_index_start
= jindex
[iidx
];
498 j_index_end
= jindex
[iidx
+1];
500 /* Get outer coordinate index */
502 i_coord_offset
= DIM
*inr
;
504 /* Load i particle coords and add shift vector */
505 ix0
= shX
+ x
[i_coord_offset
+DIM
*0+XX
];
506 iy0
= shY
+ x
[i_coord_offset
+DIM
*0+YY
];
507 iz0
= shZ
+ x
[i_coord_offset
+DIM
*0+ZZ
];
508 ix1
= shX
+ x
[i_coord_offset
+DIM
*1+XX
];
509 iy1
= shY
+ x
[i_coord_offset
+DIM
*1+YY
];
510 iz1
= shZ
+ x
[i_coord_offset
+DIM
*1+ZZ
];
511 ix2
= shX
+ x
[i_coord_offset
+DIM
*2+XX
];
512 iy2
= shY
+ x
[i_coord_offset
+DIM
*2+YY
];
513 iz2
= shZ
+ x
[i_coord_offset
+DIM
*2+ZZ
];
514 ix3
= shX
+ x
[i_coord_offset
+DIM
*3+XX
];
515 iy3
= shY
+ x
[i_coord_offset
+DIM
*3+YY
];
516 iz3
= shZ
+ x
[i_coord_offset
+DIM
*3+ZZ
];
531 /* Start inner kernel loop */
532 for(jidx
=j_index_start
; jidx
<j_index_end
; jidx
++)
534 /* Get j neighbor index, and coordinate index */
536 j_coord_offset
= DIM
*jnr
;
538 /* load j atom coordinates */
539 jx0
= x
[j_coord_offset
+DIM
*0+XX
];
540 jy0
= x
[j_coord_offset
+DIM
*0+YY
];
541 jz0
= x
[j_coord_offset
+DIM
*0+ZZ
];
543 /* Calculate displacement vector */
557 /* Calculate squared distance and things based on it */
558 rsq00
= dx00
*dx00
+dy00
*dy00
+dz00
*dz00
;
559 rsq10
= dx10
*dx10
+dy10
*dy10
+dz10
*dz10
;
560 rsq20
= dx20
*dx20
+dy20
*dy20
+dz20
*dz20
;
561 rsq30
= dx30
*dx30
+dy30
*dy30
+dz30
*dz30
;
563 rinv00
= 1.0/sqrt(rsq00
);
564 rinv10
= 1.0/sqrt(rsq10
);
565 rinv20
= 1.0/sqrt(rsq20
);
566 rinv30
= 1.0/sqrt(rsq30
);
568 rinvsq10
= rinv10
*rinv10
;
569 rinvsq20
= rinv20
*rinv20
;
570 rinvsq30
= rinv30
*rinv30
;
572 /* Load parameters for j particles */
574 vdwjidx0
= 2*vdwtype
[jnr
+0];
576 /**************************
577 * CALCULATE INTERACTIONS *
578 **************************/
582 c6_00
= vdwparam
[vdwioffset0
+vdwjidx0
];
583 c12_00
= vdwparam
[vdwioffset0
+vdwjidx0
+1];
585 /* Calculate table index by multiplying r with table scale and truncate to integer */
591 /* CUBIC SPLINE TABLE DISPERSION */
594 Geps
= vfeps
*vftab
[vfitab
+2];
595 Heps2
= vfeps
*vfeps
*vftab
[vfitab
+3];
597 FF
= Fp
+Geps
+2.0*Heps2
;
600 /* CUBIC SPLINE TABLE REPULSION */
602 Geps
= vfeps
*vftab
[vfitab
+6];
603 Heps2
= vfeps
*vfeps
*vftab
[vfitab
+7];
605 FF
= Fp
+Geps
+2.0*Heps2
;
607 fvdw
= -(fvdw6
+fvdw12
)*vftabscale
*rinv00
;
611 /* Calculate temporary vectorial force */
616 /* Update vectorial force */
620 f
[j_coord_offset
+DIM
*0+XX
] -= tx
;
621 f
[j_coord_offset
+DIM
*0+YY
] -= ty
;
622 f
[j_coord_offset
+DIM
*0+ZZ
] -= tz
;
624 /**************************
625 * CALCULATE INTERACTIONS *
626 **************************/
630 /* COULOMB ELECTROSTATICS */
632 felec
= velec
*rinvsq10
;
636 /* Calculate temporary vectorial force */
641 /* Update vectorial force */
645 f
[j_coord_offset
+DIM
*0+XX
] -= tx
;
646 f
[j_coord_offset
+DIM
*0+YY
] -= ty
;
647 f
[j_coord_offset
+DIM
*0+ZZ
] -= tz
;
649 /**************************
650 * CALCULATE INTERACTIONS *
651 **************************/
655 /* COULOMB ELECTROSTATICS */
657 felec
= velec
*rinvsq20
;
661 /* Calculate temporary vectorial force */
666 /* Update vectorial force */
670 f
[j_coord_offset
+DIM
*0+XX
] -= tx
;
671 f
[j_coord_offset
+DIM
*0+YY
] -= ty
;
672 f
[j_coord_offset
+DIM
*0+ZZ
] -= tz
;
674 /**************************
675 * CALCULATE INTERACTIONS *
676 **************************/
680 /* COULOMB ELECTROSTATICS */
682 felec
= velec
*rinvsq30
;
686 /* Calculate temporary vectorial force */
691 /* Update vectorial force */
695 f
[j_coord_offset
+DIM
*0+XX
] -= tx
;
696 f
[j_coord_offset
+DIM
*0+YY
] -= ty
;
697 f
[j_coord_offset
+DIM
*0+ZZ
] -= tz
;
699 /* Inner loop uses 128 flops */
701 /* End of innermost loop */
704 f
[i_coord_offset
+DIM
*0+XX
] += fix0
;
705 f
[i_coord_offset
+DIM
*0+YY
] += fiy0
;
706 f
[i_coord_offset
+DIM
*0+ZZ
] += fiz0
;
710 f
[i_coord_offset
+DIM
*1+XX
] += fix1
;
711 f
[i_coord_offset
+DIM
*1+YY
] += fiy1
;
712 f
[i_coord_offset
+DIM
*1+ZZ
] += fiz1
;
716 f
[i_coord_offset
+DIM
*2+XX
] += fix2
;
717 f
[i_coord_offset
+DIM
*2+YY
] += fiy2
;
718 f
[i_coord_offset
+DIM
*2+ZZ
] += fiz2
;
722 f
[i_coord_offset
+DIM
*3+XX
] += fix3
;
723 f
[i_coord_offset
+DIM
*3+YY
] += fiy3
;
724 f
[i_coord_offset
+DIM
*3+ZZ
] += fiz3
;
728 fshift
[i_shift_offset
+XX
] += tx
;
729 fshift
[i_shift_offset
+YY
] += ty
;
730 fshift
[i_shift_offset
+ZZ
] += tz
;
732 /* Increment number of inner iterations */
733 inneriter
+= j_index_end
- j_index_start
;
735 /* Outer loop uses 39 flops */
738 /* Increment number of outer iterations */
741 /* Update outer/inner flops */
743 inc_nrnb(nrnb
,eNR_NBKERNEL_ELEC_VDW_W4_F
,outeriter
*39 + inneriter
*128);