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37 * \brief OpenCL pruning kernel.
39 * OpenCL 1.2 support is expected; tested on AMD GCN and NVIDIA CC >3.0.
41 * \author Szilárd Páll <pall.szilard@gmail.com>
42 * \ingroup module_nbnxm
45 #include "nbnxm_ocl_kernel_utils.clh"
47 /* Note: the AMD compiler testing was done with (fglrx 15.12) performs best with wg
48 * size 256 (this is an artificial compiler limitation). The compiler is also
49 * sensitive to tidx/widx declaration and warp_any initialization.
50 * With the current tweaks the regular prune kenel achieves 90%, the rolling 100%
51 * occupancy with both Fiji and Hawaii.
52 * TODO: if the wg size limit is removed in an upcoming AMD compiler the NTHREAD_Z=4
53 * should be revisited.
56 #define NTHREAD_Z GMX_NBNXN_PRUNE_KERNEL_J4_CONCURRENCY
58 __attribute__((reqd_work_group_size(CL_SIZE, CL_SIZE, NTHREAD_Z)))
59 #ifdef HAVE_FRESH_LIST
61 nbnxn_kernel_prune_opencl
64 nbnxn_kernel_prune_rolling_opencl
66 (cl_nbparam_params_t nbparam_params,
67 const __global float4* restrict xq,
68 const __global float* restrict shift_vec,
69 const __global nbnxn_sci_t* pl_sci,
70 __global nbnxn_cj4_t* pl_cj4,
71 #if !defined HAVE_FRESH_LIST
74 __global unsigned int* restrict prePrunedImask,
79 /* convenience variables */
80 const cl_nbparam_params_t* const nbparam = &nbparam_params;
82 const float rlistOuter_sq = nbparam->rlistOuter_sq;
83 const float rlistInner_sq = nbparam->rlistInner_sq;
85 /* thread/block/warp id-s */
86 const int tidxi = get_local_id(0);
87 const int tidxj = get_local_id(1);
88 const int tidx = (int)(get_local_id(1) * get_local_size(0) + get_local_id(0));
92 const int tidxz = get_local_id(2);
94 const int bidx = get_group_id(0);
95 const int widx = tidx / WARP_SIZE;
97 #ifdef HAVE_FRESH_LIST
98 const bool haveFreshList = true;
100 const bool haveFreshList = false;
103 // TODO move these consts to utils and unify their use with the nonbonded kernels
104 const int c_clSize = CL_SIZE;
106 // TODO pass this value at compile-time as a macro
107 const int c_nbnxnGpuClusterpairSplit = 2;
109 /*! i-cluster interaction mask for a super-cluster with all c_nbnxnGpuNumClusterPerSupercluster=8 bits set */
110 const unsigned superClInteractionMask = ((1U << c_nbnxnGpuNumClusterPerSupercluster) - 1U);
112 #define LOCAL_OFFSET (xib + c_nbnxnGpuNumClusterPerSupercluster * c_clSize)
113 /* shmem buffer for i cj pre-loading */
116 cjs = (((__local int*)(LOCAL_OFFSET)) + tidxz * c_nbnxnGpuClusterpairSplit * c_nbnxnGpuJgroupSize);
118 /* Offset calculated using xib because cjs depends on on tidxz! */
119 # define LOCAL_OFFSET \
120 (((__local int*)(xib + c_nbnxnGpuNumClusterPerSupercluster * c_clSize)) \
121 + (NTHREAD_Z * c_nbnxnGpuClusterpairSplit * c_nbnxnGpuJgroupSize))
123 #if !USE_SUBGROUP_ANY
124 /* Local buffer used to implement __any warp vote function from CUDA.
125 volatile is used to avoid compiler optimizations for AMD builds. */
126 //NOLINTNEXTLINE(google-readability-casting)
127 volatile __local int* const warp_any = (__local int*)(LOCAL_OFFSET);
128 const int warpVoteSlot = NTHREAD_Z * tidxz + widx;
129 /* Initialise warp vote.*/
130 // if (tidx == 0 || tidx == 32)
131 if (tidx % (c_clSize * c_clSize / c_nbnxnGpuClusterpairSplit) == 0)
133 warp_any[warpVoteSlot] = 0;
136 __local int* const warp_any = 0;
137 const int warpVoteSlot = 0;
141 const nbnxn_sci_t nb_sci =
142 pl_sci[bidx * numParts + part]; /* my i super-cluster's index = sciOffset + current bidx * numParts + part */
143 const int sci = nb_sci.sci; /* super-cluster */
144 const int cij4_start = nb_sci.cj4_ind_start; /* first ...*/
145 const int cij4_end = nb_sci.cj4_ind_end; /* and last index of j clusters */
149 for (int i = 0; i < c_nbnxnGpuNumClusterPerSupercluster; i += CL_SIZE)
151 /* Pre-load i-atom x and q into shared memory */
152 const int ci = sci * c_nbnxnGpuNumClusterPerSupercluster + tidxj + i;
153 const int ai = ci * c_clSize + tidxi;
155 /* We don't need q, but using float4 in shmem avoids bank conflicts */
156 const float4 tmp = xq[ai];
157 const float4 xi = tmp
158 + (float4)(shift_vec[3 * nb_sci.shift], shift_vec[3 * nb_sci.shift + 1],
159 shift_vec[3 * nb_sci.shift + 2], 0.0F);
160 xib[(tidxj + i) * c_clSize + tidxi] = xi;
163 barrier(CLK_LOCAL_MEM_FENCE);
166 /* loop over the j clusters = seen by any of the atoms in the current super-cluster */
167 for (int j4 = cij4_start + tidxz; j4 < cij4_end; j4 += NTHREAD_Z)
169 unsigned int imaskFull, imaskCheck, imaskNew;
173 /* Read the mask from the list transferred from the CPU */
174 imaskFull = pl_cj4[j4].imei[widx].imask;
175 /* We attempt to prune all pairs present in the original list */
176 imaskCheck = imaskFull;
181 /* Read the mask from the "warp-pruned" by rlistOuter mask array */
182 imaskFull = prePrunedImask[j4 * c_nbnxnGpuClusterpairSplit + widx];
183 /* Read the old rolling pruned mask, use as a base for new */
184 imaskNew = pl_cj4[j4].imei[widx].imask;
185 /* We only need to check pairs with different mask */
186 imaskCheck = (imaskNew ^ imaskFull);
189 preloadCj4(&cjs, pl_cj4[j4].cj, tidxi, tidxj, imaskCheck != 0U);
194 for (int jm = 0; jm < c_nbnxnGpuJgroupSize; jm++)
196 if (imaskCheck & (superClInteractionMask << (jm * c_nbnxnGpuNumClusterPerSupercluster)))
198 unsigned int mask_ji = (1U << (jm * c_nbnxnGpuNumClusterPerSupercluster));
200 const int cj = loadCj(cjs, pl_cj4[j4].cj, jm, tidxi, tidxj);
201 const int aj = cj * c_clSize + tidxj;
203 /* load j atom data */
204 const float4 tmp = xq[aj];
205 const float3 xj = (float3)(tmp.xyz);
208 for (int i = 0; i < c_nbnxnGpuNumClusterPerSupercluster; i++)
210 if (imaskCheck & mask_ji)
212 /* load i-cluster coordinates from shmem */
213 const float4 xi = xib[i * c_clSize + tidxi];
215 /* distance between i and j atoms */
216 const float3 rv = (float3)(xi.xyz) - xj;
217 const float r2 = norm2(rv);
221 /* If _none_ of the atoms pairs are in cutoff range,
222 the bit corresponding to the current
223 cluster-pair in imask gets set to 0. */
224 if (!gmx_sub_group_any(warp_any, warpVoteSlot, r2 < rlistOuter_sq))
226 imaskFull &= ~mask_ji;
229 /* If any atom pair is within range, set the bit
230 corresponding to the current cluster-pair. */
231 if (gmx_sub_group_any(warp_any, warpVoteSlot, r2 < rlistInner_sq))
237 /* shift the mask bit by 1 */
243 #ifdef HAVE_FRESH_LIST
245 /* copy the list pruned to rlistOuter to a separate buffer */
246 prePrunedImask[j4 * c_nbnxnGpuClusterpairSplit + widx] = imaskFull;
249 /* update the imask with only the pairs up to rlistInner */
250 pl_cj4[j4].imei[widx].imask = imaskNew;
255 #undef USE_CJ_PREFETCH