Add grompp check for usage of "define" field in mdp
[gromacs.git] / src / gromacs / gmxpreprocess / xlate.h
blobf11c17caee9537712f36de6f9dc57be224e12033
1 /*
2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
5 * Copyright (c) 2001-2004, The GROMACS development team.
6 * Copyright (c) 2013,2014,2015,2018, by the GROMACS development team, led by
7 * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
8 * and including many others, as listed in the AUTHORS file in the
9 * top-level source directory and at http://www.gromacs.org.
11 * GROMACS is free software; you can redistribute it and/or
12 * modify it under the terms of the GNU Lesser General Public License
13 * as published by the Free Software Foundation; either version 2.1
14 * of the License, or (at your option) any later version.
16 * GROMACS is distributed in the hope that it will be useful,
17 * but WITHOUT ANY WARRANTY; without even the implied warranty of
18 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
19 * Lesser General Public License for more details.
21 * You should have received a copy of the GNU Lesser General Public
22 * License along with GROMACS; if not, see
23 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
24 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
26 * If you want to redistribute modifications to GROMACS, please
27 * consider that scientific software is very special. Version
28 * control is crucial - bugs must be traceable. We will be happy to
29 * consider code for inclusion in the official distribution, but
30 * derived work must not be called official GROMACS. Details are found
31 * in the README & COPYING files - if they are missing, get the
32 * official version at http://www.gromacs.org.
34 * To help us fund GROMACS development, we humbly ask that you cite
35 * the research papers on the package. Check out http://www.gromacs.org.
38 #ifndef GMX_GMXPREPROCESS_XLATE_H
39 #define GMX_GMXPREPROCESS_XLATE_H
41 #include "gromacs/gmxpreprocess/hackblock.h"
42 #include "gromacs/utility/basedefinitions.h"
44 struct gmx_residuetype_t;
45 struct t_atoms;
46 struct t_symtab;
48 /* If bResname is true renames atoms based on residue names,
49 * otherwise renames atoms based on rtp entry names.
51 void rename_atoms(const char* xlfile, const char *ffdir,
52 struct t_atoms *atoms, struct t_symtab *symtab, const t_restp *restp,
53 bool bResname, struct gmx_residuetype_t *rt, bool bReorderNum,
54 bool bVerbose);
56 #endif