2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 2016,2017,2018,2019, by the GROMACS development team, led by
5 * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6 * and including many others, as listed in the AUTHORS file in the
7 * top-level source directory and at http://www.gromacs.org.
9 * GROMACS is free software; you can redistribute it and/or
10 * modify it under the terms of the GNU Lesser General Public License
11 * as published by the Free Software Foundation; either version 2.1
12 * of the License, or (at your option) any later version.
14 * GROMACS is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 * Lesser General Public License for more details.
19 * You should have received a copy of the GNU Lesser General Public
20 * License along with GROMACS; if not, see
21 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
22 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
24 * If you want to redistribute modifications to GROMACS, please
25 * consider that scientific software is very special. Version
26 * control is crucial - bugs must be traceable. We will be happy to
27 * consider code for inclusion in the official distribution, but
28 * derived work must not be called official GROMACS. Details are found
29 * in the README & COPYING files - if they are missing, get the
30 * official version at http://www.gromacs.org.
32 * To help us fund GROMACS development, we humbly ask that you cite
33 * the research papers on the package. Check out http://www.gromacs.org.
37 * \brief Declares types and functions for comparing trajectories
40 * \author Mark Abraham <mark.j.abraham@gmail.com>
41 * \ingroup module_mdrun_integration_tests
43 #ifndef GMX_PROGRAMS_MDRUN_TESTS_TRAJECTORYCOMPARISON_H
44 #define GMX_PROGRAMS_MDRUN_TESTS_TRAJECTORYCOMPARISON_H
46 #include "testutils/testasserts.h"
51 class TrajectoryFrame
;
57 * \brief Helper struct for testing different trajectory components with different tolerances. */
58 struct TrajectoryTolerances
61 /*! \brief Tolerances for reproduction of different quantities. */
62 FloatingPointTolerance box
, coordinates
, velocities
, forces
;
66 //! Enumeration controlling how data within trajectory frames are compared
67 enum class ComparisonConditions
: int
72 CompareIfReferenceFound
,
78 * \brief Helper struct to specify the expected behaviour of compareFrames().
80 * By default, nothing is required to be compared, but the comparer will
81 * compare what it can with the frames it is given.
83 * Handling PBC refers to putting all the atoms in the simulation box,
84 * which requires that both the PBC type and a simulation box are
85 * available from the trajectory frame. */
86 struct TrajectoryFrameMatchSettings
88 //! Whether boxes must be compared.
89 bool mustCompareBox
= false;
90 //! Whether PBC will be handled if it can be handled.
91 bool handlePbcIfPossible
= true;
92 //! Whether PBC handling must occur for a valid comparison.
93 bool requirePbcHandling
= false;
94 //! Whether position coordinates must be compared.
95 ComparisonConditions coordinatesComparison
= ComparisonConditions::CompareIfBothFound
;
96 //! Whether velocities must be compared.
97 ComparisonConditions velocitiesComparison
= ComparisonConditions::CompareIfBothFound
;
98 //! Whether forces must be compared.
99 ComparisonConditions forcesComparison
= ComparisonConditions::CompareIfBothFound
;
103 * \brief Function object to compare the fields of the two frames for
104 * equality given the \c matchSettings_ and \c tolerances_.
106 * The two frames are required to have valid and matching values for
107 * time and step. According to \c matchSettings_, box, position coordinates,
108 * velocities and/or forces will be compared between frames, using the
109 * \c tolerances_. Comparisons will only occur when both frames have
110 * the requisite data, and will be expected to be equal within the
111 * matching component of \c tolerances_. If a comparison fails, a
112 * GoogleTest expectation failure will be given. If a comparison is
113 * required by \c matchSettings_ but cannot be done because either (or
114 * both) frames lack the requisite data, descriptive expectation
115 * failures will be given. */
116 class TrajectoryComparison
119 //! Defaults for trajectory comparisons
120 static const TrajectoryTolerances s_defaultTrajectoryTolerances
;
122 TrajectoryComparison(const TrajectoryFrameMatchSettings
&matchSettings
,
123 const TrajectoryTolerances
&tolerances
);
124 /*! \brief Compare reference with test given the \c
125 * matchSettings_ within \c tolerances_ */
126 void operator()(const TrajectoryFrame
&reference
, const TrajectoryFrame
&test
) const;
127 //! Specifies expected behavior in comparisons
128 TrajectoryFrameMatchSettings matchSettings_
;
129 //! Trajectory fields to match with given tolerances.
130 TrajectoryTolerances tolerances_
;