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Merged sqt-filter into greylag-validate. This version just does the basic
2007-11-27 Michael ColemanMerged sqt-filter into greylag-validate. This version...
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2007-05-03 Michael Colemanupdate README and TODO
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2007-05-03 Michael Colemanrename XTP to GLP
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2007-05-03 Michael Colemanzap a bit of dead code; cleanups; update TODO list
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2007-05-03 Michael Colemanupdate sloccount stats: slightly smaller since redesign (!)
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2007-05-02 Michael Colemanupdate mass tracing--now works for basic cases
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2007-05-02 Michael Colemangreylag-sge-slice: rearrange code
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2007-05-02 Michael Colemangreylag-process lockfile bug fix, plus use new greylag...
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2007-04-29 Michael Colemanopt: minor deSTL optimization (mass ladder as double...
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2007-04-29 Michael Colemanopt: minor deSTL optimization (theoretical ladders)
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2007-04-29 Michael Colemanopt: minor deSTL optimization in score_spectrum (3...
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2007-04-29 Michael Colemanopt: minor deSTL optimization in score_spectrum (2)
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2007-04-28 Michael Colemanopt: minor deSTL optimization in score_spectrum
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2007-04-26 Michael ColemanUpdate greylag-solo and tests, plus bug fixes.
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2007-04-25 Michael Colemanupdate TODO list
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2007-04-25 Michael Colemanoptimizations and minor cleanups
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2007-04-24 Michael ColemanCleanups: dead code removal/etc.
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2007-04-23 Michael ColemanUpdate install target with new scripts (and "_" naming)
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2007-04-23 Michael ColemanAdd greylag_merge. Changes to result pickle format...
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2007-04-21 Michael ColemanZap .bz2 compression
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2007-04-21 Michael ColemanUpdate some unit tests.
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2007-04-21 Michael ColemanRename python scripts to make them importable.
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2007-04-21 Michael ColemanEliminate spectra w/candidates statistic.
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2007-04-20 Michael ColemanCheck sequence db locus name uniqueness
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2007-04-20 Michael ColemanAdd basic consistency check for spectrum indices
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2007-04-20 Michael ColemanChange parent tolerance to mz units (scaling by charge)
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2007-04-20 Michael Colemanupdate TODO list
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2007-04-19 Michael ColemanRudimentary SQT file generation works; plus other fixes...
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2007-04-18 Michael Colemanbasic search runs (w/pickle output only)
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2007-04-13 Michael Colemando MyriMatch-style filtering; add min/max parent mass...
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2007-03-08 Michael ColemanAdd more tests (cgreylag spectrum functions, small...
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2007-03-08 Michael Colemangreylag.py: Don't exit on error unless we're __main__
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2007-03-08 Michael Colemanwhitespace cleanups
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2007-03-06 Michael ColemanAdd basic unit test suite, plus minor bugfixes
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2007-03-04 Michael ColemanAdd basic doctests, plus Makefile 'test' target
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2007-03-03 Michael Colemanremove unneeded logging shutdown call, syntax cleanup
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2007-03-03 Michael ColemanUse new python2.5 features (with, defaultdict, etc)
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2007-03-03 Michael Coleman.gitignore: *.pyc, *.pyo
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tandem mass spectrum peptide identification