Update greylag-solo and tests, plus bug fixes.
commit5e633ffed8e480b8ea283011bbf9331bde92f8f9
authorMichael Coleman <tutufan@gmail.com>
Thu, 26 Apr 2007 05:19:51 +0000 (26 00:19 -0500)
committerMichael Coleman <tutufan@gmail.com>
Thu, 26 Apr 2007 05:19:51 +0000 (26 00:19 -0500)
treed1ecf376dfbbedfb55a7b0c45e6203bdc8ac7bf1
parentd88a6eb590622db3e42d7dc0db591cd5405300b2
Update greylag-solo and tests, plus bug fixes.

Update greylag-solo (was greylag-mp.py) to work with greylag-grind.

Add --job-id flag (replacing id argument), to accommodate
greylag-solo.  Job id is now part of the result filename.

Update test directory, deleting outdated material.  All tests
currently succeed.

Zap some old ms2+ code.

Minor bug fixes.
20 files changed:
Makefile
TODO
cgreylag.cpp
greylag-mp.py [deleted file]
greylag_grind.py
greylag_solo.py [new file with mode: 0755]
test/basic_test.py
test/data [deleted file]
test/data.bz2 [deleted file]
test/databases.xml [deleted file]
test/empty-params.xml [deleted file]
test/greylag-params-0--6323840-ok.xml [deleted file]
test/greylag-params-0--test-2-ok.xml [deleted file]
test/greylag-params-0.xml [deleted file]
test/greylag-params-yeast-0--test-2-ok.xml [deleted file]
test/greylag-params-yeast-0.xml [deleted file]
test/qtof_defaults.xml [deleted file]
test/scary.fa
test/small_run_test.py
test/test-taxonomy.xml [deleted file]