test/methox.conf

   1 [greylag]
   2
   3 databases = 6321631_wSHUFFLED.fasta
   4
   5 decoy_locus_prefix = SHUFFLED_
   6
   7 mass_regimes = AVG/MONO
   8
   9 pervasive_mods = +C2H3ON!@C
  10
  11 potential_mods = O@M oxidation '@'
  12
  13 potential_mod_limit = 2
  14
  15 enable_pca_mods = no
  16
  17 charge_limit = 3
  18
  19 min_peptide_length = 5
  20 cleavage_motif = [X]|[X]
  21 maximum_missed_cleavage_sites = 1
  22
  23 min_parent_spectrum_mass = 500.0
  24 max_parent_spectrum_mass = 10000.0
  25
  26 TIC_cutoff_proportion = 0.98
  27
  28 parent_mz_tolerance = 3.000
  29 fragment_mass_tolerance = 0.5
  30
  31 intensity_class_count = 3
  32 intensity_class_ratio = 2.0
  33
  34 best_result_count = 5