FIX: Forgot to remove wmake stuff from twoPhaseInterfaceProperties

[freefoam.git] / INSTALL

FreeFOAM Installation Instructions for Version {fullver}
========================================================
Michael Wild <themiwi@users.sourceforge.net>
:Author Initials: MW
v{fullver}, {localdate}
http://freefoam.sourceforge.net

Obtaining the Prerequisites
---------------------------
Some of the libraries FreeFOAM requires (or optionally can use) are often not
readily available as an installable package and are quite tricky to install
manually.  FreeFOAM can automatically download and build these libraries for
you, refer to below instructions. However, if you are behinde a firewall or
CMake is unable to download a source package, you can do so manually and
place the files in the 'ThirdParty' directory in the FreeFOAM source tree. When
you run CMake, it will detect the presence of the files and not try to
download them.

You can obtain the source packages from the following URLs:

'zlib'::
  http://master.dl.sourceforge.net/project/freefoam/ThirdParty/zlib/zlib-1.2.5.tar.gz
'METIS'::
  http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.0pre2.tar.gz
'ParMetis'::
  http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/ParMetis-3.1.tar.gz
'scotch'::
  http://master.dl.sourceforge.net/project/freefoam/ThirdParty/scotch/scotch_5.1.7.dfsg.orig.tar.gz
'MGRIDGEN'::
  http://www-users.cs.umn.edu/~moulitsa/download/ParMGridGen-1.0.tar.gz
'libccmio'::
  https://wci.llnl.gov/codes/visit/3rd_party/libccmio-2.6.1.tar.gz

Building FreeFOAM
-----------------
- Install the prerequisites documented in the link:README.html[README] file. If
  your distribution does not have 'METIS', 'ParMetis', 'MGRIDGEN' or 'libccmio'
  be not worried, FreeFOAM can handle those for you.
- Download the FreeFOAM source and unpack it somewhere convenient. For the
  further instructions we will use +$HOME/Source/+.
+
---------------------------------------------------------------------------
$ mkdir -p $HOME/Source
$ cd $HOME/Source
$ wget http://master.dl.sourceforge.net/sourceforge/freefoam/freefoam-{fullver}.tar.bz2
$ tar xjf freefoam-{fullver}.tar.bz2
---------------------------------------------------------------------------
- Create a build tree and _cd_ into it:
+
---------------
$ mkdir $HOME/Source/freefoam-{fullver}-build
$ cd $HOME/Source/freefoam-{fullver}-build
---------------
- Start CMake-configuration:
+
---------------
$ ccmake $HOME/Source/freefoam-{fullver}
---------------
- Press the +c+ key. Use the arrow keys to navigate up and down and press
  +enter+ to edit a field. To commit the change, press +enter+ again, or +ESC+
  to abandon the change.  ON/OFF fields are toggled by pressing +enter+.
  Advanced options can be displayed by hitting the +t+ key.
  * Set +CMAKE_BUILD_TYPE+ to 'Release' for an optimized build.
  * If CMake complains that it can't find MPI, and you don't want to install
    it, disable +FOAM_USE_MPI+.
  * Select the default Pstream implementation by setting +FOAM_DEFAULT_PSTREAM+
    to one of 'dummy' or 'mpi'. This setting will only influence the contents
    of the <<globalconfig,global 'controlDict' file>>.
  * If you want to use the 'metis' and 'parmetis' decomposition methods, make
    sure that +FOAM_ENABLE_METIS+ and +FOAM_ENABLE_PARMETIS+ are enabled,
    respectively. If you do not have 'METIS' or 'ParMetis' installed, enable
    +FOAM_BUILD_PRIVATE_METIS+ or +FOAM_BUILD_PRIVATE_PARMETIS+, respectively.
    CMake will then try to download and build the selected libraries for you.
    Conversely, if one of the libraries is provided by your system, you can
    turn the respective setting to 'OFF'. Please note that if your system
    provides only 'ParMetis', you do not have to install 'METIS', as the former
    also contains 'METIS' in an older version.
  * If you want to use the 'MGridGen' agglomeration method for the GAMG solver,
    you need to enable +FOAM_ENABLE_MGRIDGEN+ and if the library is not
    installed on your system ensure that +FOAM_BUILD_PRIVATE_MGRIDGEN+ is
    enabled. See <<enable-mgridgen,above>> regarding the unknown license status
    of this package.
  * In order to build 'ccm26ToFoam', a conversion utility for grids generated
    with 'ProStar/ccm' (C) version 2.6, enable the setting
    +FOAM_ENABLE_CCMIO+ and if 'libccmio' is not installed on your system,
    also +FOAM_BUILD_PRIVATE_CCMIO+. Refer to the <<enable-ccmio,above>>
    description of the 'libccmio' package for the license restrictions which
    apply to this package. If you decide to build a private version, please
    read the description of <<private-ccmio,+FOAM_BUILD_PRIVATE_CCMIO>>
    carefully.
  * If you plan on installing FreeFOAM, set +CMAKE_INSTALL_PREFIX+ to the base directory
    under which FreeFOAM should reside.
  * For more fine-grained control over what gets installed where, adjust
    +FOAM_INSTALL_CONFIG_PATH+, +FOAM_INSTALL_HEADER_PATH+, +FOAM_INSTALL_LIBRARY_PATH+,
    +FOAM_INSTALL_FRAMEWORK_PATH+, +FOAM_INSTALL_PVFOAMREADER_PATH+ and
    +FOAM_INSTALL_USERDFOAM_PATH+. Paths not starting with a slash ('/') will
    be relative to 'CMAKE_INSTALL_PREFIX'. If you include a leading slash, the
    paths are absolute.
  * If you want FreeFOAM to use 'float' as the floating point type instead of
    'double', change +FOAM_DOUBLE_PRECISION+ to 'OFF'.
- Hit +c+ again. You shouldn't get any errors anymore now. Keep pressing +c+
  until ccmake displays "++Press [g] to generate and exit++" in the legend at
  the bottom of the interface.
- Press +g+ to generate the Makefiles and exit the ccmake interface.
- Start the native build tool. If you used the 'Makefile' generator
  (which is the default for Unix-platforms), type
+
----------------
$ make
----------------
- If you have a multi-core/processor machine, you can speed things up
  significantly by telling Make to run independent jobs in parallel.
  A good choice for the number of parallel jobs to run is the
  number of CPU's/cores you have in your machine plus 1 (to compensate
  for disk-latency). For a typical dual-core machine, run
+
----------------
$ make -j3
----------------

Installing FreeFOAM
-------------------
If you want to, you can now install FreeFOAM. Depending on the
+CMAKE_INSTALL_PREFIX+ and the individual +FOAM_INSTALL_*_PATH+ it is possible
that you have to do this as root, i.e. use +su+ or +sudo+.
---------------
$ make install
---------------

Using FreeFOAM
--------------
If you didn't change +CMAKE_INSTALL_PREFIX+ and +FOAM_INSTALL_BIN_PATH+ chances
are that you can start using FreeFOAM right after you installed it without any
further steps being necessary.

[[globalconfig]]
Global Configuration Files
~~~~~~~~~~~~~~~~~~~~~~~~~~
Unfortunately the OpenFOAM library (on which FreeFOAM builds) and some
applications require some files to be present for start-up. It finds those
in the following places (in the specified order, picking the first hit):

1. Under the directory specified in the +$FREEFOAM_CONFIG_DIR+ environment
   variable
2. In '$HOME/.FreeFOAM/{shortver}'
3. In '$HOME/.FreeFOAM'
4. In the installation directory of the configuration files. There are
   two possible places for this:
+
   '<CMAKE_INSTALL_PREFIX>/<FOAM_INSTALL_CONFIG_PATH>':: if you specified
     +<FOAM_INSTALL_CONFIG_PATH>+ as a relative path.
    '<FOAM_INSTALL_CONFIG_PATH>':: if you specified +<FOAM_INSTALL_CONFIG_PATH>+ as
    an absolute path.
+
The default location is '/usr/local/etc/FreeFOAM-{ver}'.

Selecting the Parallel Communications Library
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Both, FreeFOAM and OpenFOAM abstract the parallel operations into the 'Pstream'
library, making it rather simple to firstly switch between parallel
implementations and secondly port the software to a new communications library.
However, FreeFOAM uses a much more flexible mechanism of determining which
'Pstream' implementation library to use than OpenFOAM. The latter does this by
adjusting the +LD_LIBRARY_PATH+ environment variable.  As FreeFOAM wants to be a
well behaved Linux citizen, this is not an option. Instead, FreeFOAM dynamically
loads the desired 'Pstream' library at startup (i.e. as a plug-in).  The
following list details how FreeFOAM determines what library to load (if at all):

1. If the environment variable +FREEFOAM_PSTREAM_LIBRARY+ is set,
   FreeFOAM will try to load the library specified by it.
2. If the sub-dictionary +PstreamImplementation+ exists in the global
   'controlDict' file (see <<globalconfig,'Global Configuration Files'>>), it
   reads the value of the entry +configName+ therein. It then expects that a
   sub-dictionary of +PstreamImplementation+ with the name specified in
   +configName+ exists. If that sub-dictionary contains the entry +library+, it
   will try to load a library specified by the value of that entry.

After FreeFOAM (possibly) loaded the library, it will try to instantiate
concrete implementations of the abstract base classes +PstreamImpl+,
+IPstreamImpl+ and +OPstreamImpl+. Which classes are to be instantiated
is determined as follows:

1. FreeFOAM queries the environment variables +FREEFOAM_PSTREAM_CLASS+,
   +FREEFOAM_IPSTREAM_CLASS+ and +FREEFOAM_OPSTREAM_CLASS+ for the class
   names to be instantiated.
2. For any of the variables not set,  it requires the sub-dictionary
   +PstreamImplementation+ to be present in the global 'controlDict', reads the
   value of +configName+ and similarly to the library loading, loads the
   sub-dictionary specified by that value. It then expects to find the entries
   +Pstream+, +IPstream+ and +OPstream+ which specify the names of the classes
   to load.

This means that one can create a global 'controlDict' file containing
(among other things) something like the following:
=========
---------
PstreamImplementation
{
    //configName dummy;
    configName mpi;

    dummy
    {
        library libdummyPstream.so;
        Pstream dummyPstreamImpl;
        OPstream dummyOPstreamImpl;
        IPstream dummyIPstreamImpl;
    }

    mpi
    {
        library libmpiPstream.so;
        Pstream mpiPstreamImpl;
        OPstream mpiOPstreamImpl;
        IPstream mpiIPstreamImpl;
    }
}
---------
=========

This way the administrator can provide a global 'controlDict' in the FreeFOAM
installation. Every user can then override that 'controlDict' by supplying her
own file in her home directory as detailed in <<globalconfig,'Global
Configuration Files'>>. In order to select a particular 'Pstream' implementation
for a specific communications library, the user can then either adjust the
+PstreamImplementation::configName+ entry in the global 'controlDict' file, set
the +FREEFOAM_PSTREAM_CONFIG+ variable or for full control, set the variables
+FREEFOAM_PSTREAM_LIBRARY+, +FREEFOAM_PSTREAM_CLASS+, +FREEFOAM_IPSTREAM_CLASS+
and +FREEFOAM_OPSTREAM_CLASS+.

Running FreeFOAM From the Build Tree
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
You can use FreeFOAM without installing it first, directly from the build tree.
However, this might take a little bit more effort to set up because most likely
you will have to adjust the following environment variables:

PATH:: Must contain '$HOME/Source/freefoam-{fullver}-build/bin'
LD_LIBRARY_PATH:: Must contain '$HOME/Source/freefoam-{fullver}-build/lib/FreeFOAM-{ver}'
FREEFOAM_CONFIG_DIR:: Should point to '$HOME/Source/freefoam-{fullver}-build/etc'

Where it is assumed that you followed the <<installation,installation instructions>>. If
you used different paths for downloading and compiling FreeFOAM, you will have
to adjust these names. Refer to <<environment,'Extending Search Paths And
Setting Environment Variables Permanently'>> if you need help setting these
variables.

Running the tutorials
---------------------
Now you should be able to run the tutorial cases. For this copy the +tutorials+
directory to some convenient place:
---------------
$ mkdir -p $HOME/FreeFOAM/$LOGNAME-{shortver}/run
$ cp -r $HOME/Source/freefoam-{fullver}-build/tutorials $HOME/FreeFOAM/$LOGNAME-{shortver}/run/
$ cd $HOME/FreeFOAM/$LOGNAME-{shortver}/run/tutorials
---------------
And try to run e.g. the 'cavity' tutorial case:
---------------
$ cd icoFoam
$ freefoam blockMesh -case cavity
$ freefoam checkMesh -case cavity
$ freefoam ico -case cavity
---------------
Things should run smoothly and finish without an error.

All the tutorials contain a script for automatic execution since some of the
cases are quite intricate and it is not obvious how to run them. Also, these
scripts are used for automated testing. The scripts are called 'Allrun', where
the one located in the 'tutorials' directory is a driver script to run all the
other tutorials.

Obtaining the Source Code from the GIT repository
-------------------------------------------------
- Clone the FreeFOAM repository (here the clone is placed in
  +$HOME/Source/FreeFOAM+):
+
---------------------------------------------------------------------------
$ mkdir -p $HOME/Source
$ git clone git://repo.or.cz/freefoam.git $HOME/Source/FreeFOAM
---------------------------------------------------------------------------
- Proceed in the same way (replacing the path names apropriately) as in the
  above build instructions.

Shell completion scripts
------------------------
FreeFOAM comes with completions scripts for the
http://www.gnu.org/software/bash/[BASH] and http://www.zsh.org/[ZSH] shells.
The former is quite simplistic and only offers very basic completion of the
available application names. The ZSH completion, however, is quite complete and
also completes options and arguments for all applications. These completion
functions are not installed by +make install+, because no two systems have the
same locations for these kinds of scripts. You find them for manual
installation in the FreeFOAM sources in the directory
'data/shellFunctions/bashCompletion' and 'data/shellFunctions/zshCompletion'
respectively. Please refer to the documentation of your system/shell on where
to place them.

Emacs mode
----------
FreeFOAM includes a rudimentary major mode for the
http://www.gnu.org/software/emacs[Emacs] programming editor. If you want to use
this mode, place the file 'data/editor-modes/foamdict-mode.el' in a directory
where your Emacs installation finds it. Please refer to the Emacs documentation
for further instructions.

Build Configuration Reference
-----------------------------
[glossary]
+CMAKE_BUILD_TYPE+::
  One of '<empty>', 'Debug', 'Release', 'RelWithDebInfo' and 'MinSizeRel'.
  Refer to the CMake documentation for more detail.
+FOAM_DOUBLE_PRECISION+::
  If set to 'ON' FreeFOAM will be compiled using 'double' as the
  floating point type. If set to 'OFF' it will use 'float'.
+FOAM_BUILD_FRAMEWORKS+::
  If this is enabled, the libraries are built as frameworks. Only available on
  Mac OS X.
+FOAM_EXE_PREFIX+::
  Prefix used to mangle application names. Normally this shouldn't be changed.
+CMAKE_INSTALL_PREFIX+::
  Installation prefix under which to install FreeFOAM.
+FOAM_INSTALL_BIN_PATH+::
  Installation path of the binaries. If not absolute, it is relative to
  'CMAKE_INSTALL_PREFIX'.
+FOAM_INSTALL_LIBEXEC_PATH+::
  Installation path of the binaries which should not be on the +PATH+. If not
  absolute, it is relative to +CMAKE_INSTALL_PREFIX+.
+FOAM_INSTALL_CONFIG_PATH+::
  Installation path of the configuration files. If not absolute, it is
  relative to 'CMAKE_INSTALL_PREFIX'.
+FOAM_INSTALL_HEADER_PATH+::
  Installation path of the header files. If not absolute, it is
  relative to 'CMAKE_INSTALL_PREFIX'. On Mac OS X, and if
  'FOAM_BUILD_FRAMEWORKS' is enabled, this setting is ignored.
+FOAM_INSTALL_LIBRARY_PATH+::
  Installation path of the libraries. If not absolute, it is
  relative to 'CMAKE_INSTALL_PREFIX'.
+FOAM_INSTALL_FRAMEWORK_PATH+::
  Installation path of the Mac OS X frameworks. If not absolute, it is
  relative to 'CMAKE_INSTALL_PREFIX'. This is only available and takes
  effect if FreeFOAM is compiled on Mac OS X, and if
  'FOAM_BUILD_FRAMEWORKS' is enabled.
+FOAM_INSTALL_USERDFOAM_PATH+::
  Installation path of the Ensight plug-in. If not absolute, it is
  relative to 'CMAKE_INSTALL_PREFIX'.
+FOAM_USE_MPI+::
  If enabled, FreeFOAM will use the MPI parallel communications library.
  This is required in order to build some of the libraries and utilities.
+FOAM_DEFAULT_PSTREAM+::
  The default Pstream selection in the global 'controlDict' file.
[[enable-ccmio]]
+FOAM_ENABLE_CCMIO+::
  Enable the use of 'libccmio'. This is required to build the grid conversion
  utility 'ccm26ToFoam'.
+
[WARNING]
The license of 'libccmio' (C) is proprietary and requires the consent of the
copyright holders (http://www.cd-adapco.com[CD-adapco]) to download and use the
library. Further it is not allowed to redistribute it in any form. The request
for permission of inclusion with http://debian.org[Debian] was answered as
follows by mailto:geoffrey.prewett@us.cd-adapco.com[Geoffrey Prewett]:
+
--------------------------------------------------------------------------------
Gerber,

Sorry for the delay in response.  I checked back with our development director,
and he felt that it would be best to not include libccmio with Debian.
Instead, we would prefer to continue our current policy and keep it on our
web/FTP and have people ask for it.  There are three reasons for this:

1) We don't support STAR on Debian, and don't want to give the impression that we do.
2) We would like to keep a list of people that we give the library to.
3) This is not a general purpose library;  its sole purpose is to communicate
between our products.  Accepting outside changes risks committing a change that
would break our own software in possibly subtle ways.

So I regret to tell you that my company has declined to permit libccmio to be
distributed as part of Debian.

Regards,
Geoff Prewett
--------------------------------------------------------------------------------
+
[[private-ccmio]]
+FOAM_BUILD_PRIVATE_CCMIO+::
  Automatically download and build libccmio. Unfortunately this process may
  fail in the download step if CMake cannot find either 'wget' or 'curl' on
  your system, since CMake itself currently does not support 'https' URLs. If
  this happens, the build process will abort. To fix the issue, Download the
  file https://wci.llnl.gov/codes/visit/3rd_party/libccmio-2.6.1.tar.gz
  manually and place it in +ThirdParty/ccmio/src+ (relative to the build
  directory). It is important that you re-run CMake *before* restarting the
  build in order to notify the build system that the file is now there.
+FOAM_ENABLE_METIS+::
  Enable the use of the 'METIS' graph partitioning library which is required to
  implement the 'metis' decomposition method.
+FOAM_BUILD_PRIVATE_METIS+::
  Automatically download and build 'METIS'.
+FOAM_BUILD_PRIVATE_PARMETIS+::
  Automatically download and build 'ParMetis'.
[[enable-mgridgen]]
+FOAM_ENABLE_MGRIDGEN+::
  Enable the use of 'MGRIDGEN' which is required to build
  'MGridGenGamgAgglomeration' providing the 'MGridGen' agglomeration method for
  the GAMG solver.
+
[WARNING]
The license of 'MGRIDGEN' is unknown and the upstream authors so far have not
answered any inquiries to resolve the issue. If you enable the use of
'MGRIDGEN' you alone are responsible for ensuring that you don't violate any
license conditions applying to these libraries. The authors of FreeFOAM will
and cannot take any responsibility for your actions.
+
+FOAM_BUILD_PRIVATE_MGRIDGEN+::
  Automatically download and build 'MGRIDGEN'.
+FOAM_ENABLE_DOXYGEN_DOCS+::
  Enable building of the 'Doxygen API documentation'. The documentation will
  only be built once and is not updated automatically. This is because it
  depends on a huge number of files and would make dependency tracking very
  slow and difficult to maintain. To force the re-generation of the API
  documentation execute +make apidoc+.
+FOAM_DOXYDOCS_FOR_SF+::
  This setting is for the maintainers of the FreeFOAM and indicates whether the
  Doxygen documentation should be built for deployment on
  http://freefoam.sourceforge.net.
+FOAM_ENABLE_MANPAGE_HELP+::
  [[foam_enable_manpage_help]]
  Build (and install) the help-pages in manpage format. This requires a
  complete http://www.methods.co.nz/asciidoc[Asciidoc] toolchain to be present.
+FOAM_ENABLE_XHMTL_HELP+::
  Build (and install) the help-pages in xhtml format for the display in a web
  browser. The requirements are the same as for
  <<foam_enable_manpage_help,+FOAM_ENABLE_MANPAGE_HELP+>>.
+FOAM_USE_LOCAL_DOXYGEN_DOCS+::
  This setting influences the location in which the Doxygen source
  code documentation is looked for if any of the FreeFOAM applications
  is invoked with the '-doc' or '-srcDoc' options. If it is disabled,
  the documentation will be loaded over the network from
  http://freefoam.sf.net/doc/Doxygen/html. If you enable it, the
  documentation will be loaded locally. This requires that you either
  build and install the documentation by enabling +FOAM_ENABLE_DOXYGEN_DOCS+,
  or provide the required HTML files otherwise.
+HTML_DOC_BROWSER+::
  This is the program used to display the Doxygen source code documentation
  if any of the FreeFOAM applications is invoked with the '-doc' or '-srcDoc'
  options. The special value of 'ECHO' changes the behaviour to just write
  the location of the HTML file to the output. This is a good setting if
  you're system doesn't have any kind of HTML browser installed (such
  as on a cluster).
+FOAM_HTML_DOC_BROWSER_COMMAND+::
  This is the command with which to invoke the HTML browser. By default
  it calls the program named in +HTML_DOC_BROWSER+ and passes it the
  name/URL of the documentation file to be displayed. You shouldn't
  have to change this unless your HTML browser requires some unusual
  options or arguments.

Troubleshooting
---------------

The FreeFOAM Executables Are Not Found By The Shell
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
There are three possible reasons for this:

1. Your shell (notably 'csh', 'tcsh' and 'zsh') requires you to refresh the
   cache of available executables. You can do so by entering the command:
+
--------------
$ rehash
--------------
+
2. If 'rehashing' didn't solve the problem, the problem most likely is that you
   installed FreeFOAM into a non-standard location by changing the configuration
   variables +CMAKE_INSTALL_PREFIX+ or +FOAM_INSTALL_BIN_PATH+ in which case the
   executables where installed into a directory not searched by the shell. In
   this case you have to add the installation directory of the executables to
   the +PATH+ variable. There are two possible locations:
+
--
'<CMAKE_INSTALL_PREFIX>/<FOAM_INSTALL_BIN_PATH>':: if you specified
  +FOAM_INSTALL_BIN_PATH+ as a relative path
'<FOAM_INSTALL_BIN_PATH>':: if you specified +FOAM_INSTALL_BIN_PATH+ as an absolute
  path
--
+
After extending the +PATH+ variable with the installation directory of the
executables, you should be able to run all FreeFOAM applications as any other
binary available on the system. See <<environment,'Extending Search Paths And
Setting Environment Variables Permanently'>> for
instructions on how to extend the search path.

3. This option is similar to the previous solution and applies if you want to
   run FreeFOAM from the build tree (i.e. without running +make install+). In
   this case you again have to make sure that your shell finds the executables
   built by CMake by extending the +PATH+ variable. Further, you have to tell
   FreeFOAM where to find the global configuration files (see
   <<globalconfig,'Global Configuration Files'>>). Here, you have the option to
   place the files under your home directory or set an environment variable. The
   former can be achieved by:
+
--------------
$ mkdir -p $HOME/.FreeFOAM/{shortver}
$ cp $HOME/Source/freefoam-{fullver}-build/etc/controlDict $HOME/.FreeFOAM/{shortver}
$ cp $HOME/Source/freefoam-{fullver}-build/etc/cellModels $HOME/.FreeFOAM/{shortver}
$ cp -r $HOME/Source/freefoam-{fullver}-build/etc/thermoData $HOME/.FreeFOAM/{shortver}
--------------
+
The latter (and recommended) method is to set the environment variable
+FREEFOAM_CONFIG_DIR+ to '$HOME/Source/freefoam-{fullver}-build/etc'. Adjust paths to the
build tree to your actual setup.

Starting Any FreeFOAM Application Fails Because Some Libraries Cannot Be Found
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Although CMake should have taken care of this by using +RPATH+ on Linux and
+install_name+ on Mac OS X, it might be necessary on some systems to adjust the
library search paths:

+LD_LIBRARY_PATH+:: This variable is used by all Unix like systems (e.g. Linux,
  Mac OS X, etc.)
+DYLD_LIBRARY_PATH+:: This variable is used by Mac OS X.

If you installed FreeFOAM, there are (as with the executables), two possible
installation directories:

'<CMAKE_INSTALL_PREFIX>/<FOAM_INSTALL_LIBRARY_PATH>':: if you specified
  +FOAM_INSTALL_LIBRARY_PATH+ as a relative path.
'<FOAM_INSTALL_LIBRARY_PATH>':: if you specified +FOAM_INSTALL_LIBRARY_PATH+ as an absolute
  path.

If you are trying to run from the build tree, you have to include
'$HOME/Source/freefoam-{fullver}-build/lib/FreeFOAM-{ver}' in the above mentioned search
paths (where you have to adjust the location of the build tree to your actual
setup).

A Running FreeFOAM Application Aborts Because It Can't 'dlopen' A Library
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FreeFOAM (and OpenFOAM) often dynamically load libraries at run-time (a.k.a
plug-ins) to add features the user requested without requiring that the whole
application be recompiled. This makes it very simple to add new boundary
conditions, turbulence and combustion models etc. However, it also requires that
FreeFOAM must be able to find these libraries at run-time. The operating system
function which does the loading of the libraries ('dlopen') usually tries to
find the library with the given name in several places; namely a default search
path and a search path configured by one or multiple environment variables such
as +LD_LIBRARY_PATH+ or +DYLD_LIBRARY_PATH+ (on Mac OS X). The details vary from
platform to platform, so you best consult the documentation of 'dlopen' for the
details.

Additionally FreeFOAM allows you to configure a custom search path for plug-ins
in the <<globalconfig,global 'controlDict'>> file by listing the directories to
be searched in the list +LibrarySearchPaths+. By default FreeFOAM is configured
to search for plug-ins in the location where CMake installed them.

If you want to add your own plug-in libraries (e.g. you want to add your own
boundary conditions class), you most probably will want to extend this search
path.

FreeFOAM Aborts When Trying To Instantiate a Plugin Class
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
If you get a warning message similar to the following

 --> FOAM Warning :
     From function dlLibraryTable::open(const dictionary& dict, const word& libsEntry, const TablePtr tablePtr)
     in file XXX/src/OpenFOAM/db/dlLibraryTable/dlLibraryTableTemplates.C at line 68
     library "libfieldFunctionObjects.so" did not introduce any new entries

(where +XXX+ is the path to the FreeFOAM source code and the actual library
name can be different), followed by a fatal error stating that FreeFOAM does
not know a class or type, e.g.

 --> FOAM FATAL ERROR:
 Unknown function type fieldAverage

 Table of functionObjects is empty


     From function functionObject::New(const word& name, const Time&, const dictionary&)
     in file XXX/src/OpenFOAM/db/functionObjects/functionObject/functionObject.C at line 74.

 FOAM exiting

and you are absolutely sure that the named type actually exists in the library
mentioned in the preceding warning message, the issue is very likely that
FreeFOAM is loading the plugin library from a different binary tree than the
executable belongs to.

[IMPORTANT]
Always make sure that you never load plugins from different binary trees (where
the build tree and the install tree count as such). If you want to run a binary
from the build tree but already have a corresponding installation tree, use the
+FREEFOAM_CONFIG_DIR+ environment variable to point FreeFOAM to the directory
'<path to build tree>/etc/' containing the global 'controlDict' file in the
**build tree**.

[[environment]]
Extending Search Paths And Setting Environment Variables Permanently
--------------------------------------------------------------------
The way one sets environment variables and extends the executable and library
search paths permanently strongly depends on the shell used. Usually one has to
create or change an initialization file in the users home directory. In the
following this will be discussed very briefly for the popular shells 'BASH' and
'tcsh'.  However, if you need more help or want information on using the shell,
there is an excellent tutorial available at http://linuxcommand.org.

BASH
~~~~
The BASH shell is the default shell for most Linux/Unix distributions. Most
systems configure the BASH shell such that it reads the text file
'$HOME/.bashrc' when starting up, so this is the place where one appends
customizations of the environment variables. On some systems this file is not
processed by default (notably Mac OS X). In this case you can use
'$HOME/.bash_profile'.

Referencing A Variable
^^^^^^^^^^^^^^^^^^^^^^
To retrieve the value stored in a shell variable or environment variable, one
prefixes its name with the dollar (+$+) character.

Setting A Variable
^^^^^^^^^^^^^^^^^^
The syntax for setting a variable and making it available to child-processes of
the shell is the following:
-------
$ export variable_name=variable_value
-------
Note that no white-space characters are allowed surrounding the +=+ sign.

Extending A Search Path
^^^^^^^^^^^^^^^^^^^^^^^
The shell and other Unix system facilities use environment variables to locate
executables and dynamically linked libraries. These search paths consist of
strings naming directories in which the executables and libraries should be
searched for. The individual paths are separated by a colon (+:+) character. To
add the e.g. the directory '$HOME/bin' to the search path for executables, one
would do the following:
-------
$ export PATH=$PATH:$HOME/bin
-------
which appends '$HOME/bin' to the end of the +PATH+ variable.

TCSH
~~~~
Some users and administrators prefer to use a 'C-Shell', such as the TCSH. Here
you can use e.g. the file '$HOME/.tcshrc' to customize the environment.

Referencing A Variable
^^^^^^^^^^^^^^^^^^^^^^
As with the BASH, one retrieves the value stored in a shell variable or
environment variable by prefixing its name with the dollar (+$+) character.
Sometimes it is also necessary to protect the variable name by surrounding it
with curly braces (+{+ and +}+).

Setting A Variable
^^^^^^^^^^^^^^^^^^
The syntax for setting a variable and making it available to child-processes of
the shell is the following:
-------
$ setenv variable_name variable_value
-------

Extending A Search Path
^^^^^^^^^^^^^^^^^^^^^^^
The shell and other Unix system facilities use environment variables to locate
executables and dynamically linked libraries. These search paths consist of
strings naming directories in which the executables and libraries should be
searched for. The individual paths are separated by a colon (+:+) character. To
add the e.g. the directory '$HOME/bin' to the search path for executables, one
would do the following:
[subs="verbatim"]
-------
$ setenv PATH ${PATH}:${HOME}/bin
-------
which appends '$HOME/bin' to the end of the +PATH+ variable.  Note that
'C-shells' usually require the user to type 'rehash' after changing the +PATH+
variable to update the cache of available programs.

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