bin/foamJob

   1 #!/bin/sh
   2 #------------------------------------------------------------------------------
   3 # =========                 |
   4 # \\      /  F ield         | foam-extend: Open Source CFD
   5 #  \\    /   O peration     | Version:     4.0
   6 #   \\  /    A nd           | Web:         http://www.foam-extend.org
   7 #    \\/     M anipulation  | For copyright notice see file Copyright
   8 #------------------------------------------------------------------------------
   9 # License
  10 #     This file is part of foam-extend.
  11 #
  12 #     foam-extend is free software: you can redistribute it and/or modify it
  13 #     under the terms of the GNU General Public License as published by the
  14 #     Free Software Foundation, either version 3 of the License, or (at your
  15 #     option) any later version.
  16 #
  17 #     foam-extend is distributed in the hope that it will be useful, but
  18 #     WITHOUT ANY WARRANTY; without even the implied warranty of
  19 #     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
  20 #     General Public License for more details.
  21 #
  22 #     You should have received a copy of the GNU General Public License
  23 #     along with foam-extend.  If not, see <http://www.gnu.org/licenses/>.
  24 #
  25 # Script
  26 #     foamJob
  27 #
  28 # Description
  29 #
  30 #------------------------------------------------------------------------------
  31 usage() {
  32    while [ "$#" -ge 1 ]; do echo "$1"; shift; done
  33    cat<<USAGE
  34
  35 usage: ${0##*/} [OPTION] <application> ...
  36
  37 options:
  38   -case dir     specify case directory
  39   -s            also sends output to screen
  40   -p            parallel run of processors
  41   -v ver        specify OpenFOAM version
  42   -help         this usage
  43
  44 * run an OpenFOAM job in background.
  45   Redirects the output to 'log' in the case directory
  46
  47 USAGE
  48    exit 1
  49 }
  50
  51 unset version
  52
  53 # replacement for possibly buggy 'which'
  54 findExec() {
  55    case "$1" in
  56    */*)
  57       if [ -x "$1" ] ; then
  58          echo "$1"
  59          return 0
  60       fi
  61       ;;
  62    esac
  63
  64    oldIFS=$IFS
  65    IFS=':'
  66    for d in $PATH
  67    do
  68       # echo "testing: $d/$1" 1>&2
  69       if [ -x "$d/$1" -a ! -d "$d/$1" ] ; then
  70          # echo "Found exec: $d/$1" 1>&2
  71          IFS=$oldIFS
  72          echo "$d/$1"
  73          return 0
  74       fi
  75    done
  76    IFS=$oldIFS
  77    echo ""
  78    return 1
  79 }
  80
  81 # grep for $1
  82 getPID() {
  83    ps -u $LOGNAME -o 'pid,args' | fgrep "$1 " | fgrep -v grep | head -1 | awk '{ print $1 }'
  84 }
  85
  86
  87 consultGuide() {
  88 cat<<EOF
  89
  90 Please consult the User Guide for details of parallel running
  91 EOF
  92 }
  93
  94 # MAIN SCRIPT
  95 #~~~~~~~~~~~~
  96 SCREEN=no
  97 PARALLEL=no
  98
  99
 100 # parse options
 101 while [ "$#" -gt 0 ]
 102 do
 103    case "$1" in
 104    -h | -help)
 105       usage
 106       ;;
 107    -case)
 108       [ "$#" -ge 2 ] || usage "'-case' option requires an argument"
 109       caseDir=$2
 110       shift 2
 111       cd "$caseDir" 2>/dev/null || usage "directory does not exist:  '$caseDir'"
 112       ;;
 113    -s)
 114       SCREEN=yes
 115       shift
 116       ;;
 117    -p)
 118       PARALLEL=yes
 119       shift
 120       ;;
 121    -v)
 122       shift
 123       version=$1
 124       shift
 125       ;;
 126    --)
 127       shift
 128       break
 129       ;;
 130    -*)
 131       usage "invalid option '$1'"
 132       ;;
 133    *)
 134       break
 135       ;;
 136    esac
 137 done
 138
 139 if [ "$#" -lt 1 ]; then
 140    usage "No application specified"
 141 fi
 142
 143 # use foamExec for a specified version and for remote (parallel) runs
 144 if [ -n "$version" -o "$PARALLEL" = yes ]; then
 145    APPLICATION=`findExec foamExec`
 146    if [ $? -ne 0 ]; then
 147       usage "'foamExec' not found"
 148    fi
 149    if [ -n "$version" ]; then
 150       APPLICATION="$APPLICATION -v $version"
 151    fi
 152 else
 153    APPLICATION=`findExec $1`
 154    if [ $? -ne 0 ]; then
 155       usage "Application '$1' executable not found"
 156    fi
 157    echo "Application : $1"
 158    shift
 159 fi
 160
 161 if [ "$PARALLEL" = no ]; then
 162 #
 163 #   RUN ON SINGLE PROCESSOR
 164 #
 165     if [ "$SCREEN" = no ]; then
 166        echo "Executing: $APPLICATION $@ > log 2>&1 &"
 167        $APPLICATION $@ > log 2>&1 &
 168     else
 169        echo "Executing: $APPLICATION $@ | tee log &"
 170        $APPLICATION $@ | tee log &
 171        wait $!
 172     fi
 173 else
 174
 175 #
 176 #   IS THE CASE DECOMPOSED?
 177 #
 178    if [ -r "processor0" ] ; then
 179       NPROCS="`/bin/ls -1d processor* | wc -l`"
 180    else
 181       echo "Case is not currently decomposed"
 182       if [ -r system/decomposeParDict ] ; then
 183          echo "system/decomposeParDict exists"
 184          echo "Try decomposing with \"foamJob decomposePar\""
 185          exit 1
 186       else
 187          echo "Cannot find system/decomposeParDict file required to decompose the case for parallel running."
 188          consultGuide
 189          exit 1
 190       fi
 191    fi
 192 #
 193 #   LOCATE MPIRUN
 194 #
 195    mpirun=`findExec mpirun`
 196    if [ $? -ne 0 ]; then
 197       usage "'mpirun' not found"
 198    fi
 199    mpiopts="-np $NPROCS"
 200
 201 #
 202 #   IS THE MACHINE READY TO RUN PARALLEL?
 203 #
 204    echo "Parallel processing using $WM_MPLIB with $NPROCS processors"
 205    case "$WM_MPLIB" in
 206    OPENMPI)
 207       # add hostfile info
 208       for hostfile in \
 209          hostfile \
 210          machines \
 211          system/hostfile \
 212          system/machines \
 213       ;
 214       do
 215          if [ -r $hostfile ]; then
 216             mpiopts="$mpiopts -hostfile $hostfile"
 217             break
 218          fi
 219       done
 220       ;;
 221    esac
 222
 223 #
 224 #   RUN IN PARALLEL
 225 #
 226    if [ "$SCREEN" = no ] ; then
 227       echo "Executing: mpirun $mpiopts $APPLICATION $@ -parallel > log 2>&1"
 228       $mpirun $mpiopts $APPLICATION $@ -parallel > log 2>&1 &
 229    else
 230       echo "Executing: mpirun $mpiopts $APPLICATION $@ -parallel | tee log"
 231       $mpirun $mpiopts $APPLICATION $@ -parallel  | tee log
 232    fi
 233 fi
 234
 235 #------------------------------------------------------------------------------