lisp/org/org-plot.el

   1 ;;; org-plot.el --- Support for plotting from Org-mode
   2
   3 ;; Copyright (C) 2008-2012 Free Software Foundation, Inc.
   4 ;;
   5 ;; Author: Eric Schulte <schulte dot eric at gmail dot com>
   6 ;; Keywords: tables, plotting
   7 ;; Homepage: http://orgmode.org
   8 ;;
   9 ;; This file is part of GNU Emacs.
  10 ;;
  11 ;; GNU Emacs is free software: you can redistribute it and/or modify
  12 ;; it under the terms of the GNU General Public License as published by
  13 ;; the Free Software Foundation, either version 3 of the License, or
  14 ;; (at your option) any later version.
  15
  16 ;; GNU Emacs is distributed in the hope that it will be useful,
  17 ;; but WITHOUT ANY WARRANTY; without even the implied warranty of
  18 ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  19 ;; GNU General Public License for more details.
  20
  21 ;; You should have received a copy of the GNU General Public License
  22 ;; along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>.
  23
  24 ;;; Commentary:
  25
  26 ;; Borrows ideas and a couple of lines of code from org-exp.el.
  27
  28 ;; Thanks to the org-mode mailing list for testing and implementation
  29 ;; and feature suggestions
  30
  31 ;;; Code:
  32 (require 'org)
  33 (require 'org-exp)
  34 (require 'org-table)
  35 (eval-when-compile
  36   (require 'cl))
  37
  38 (declare-function gnuplot-delchar-or-maybe-eof "ext:gnuplot" (arg))
  39 (declare-function gnuplot-mode "ext:gnuplot" ())
  40 (declare-function gnuplot-send-buffer-to-gnuplot "ext:gnuplot" ())
  41
  42 (defvar org-plot/gnuplot-default-options
  43   '((:plot-type . 2d)
  44     (:with . lines)
  45     (:ind . 0))
  46   "Default options to gnuplot used by `org-plot/gnuplot'.")
  47
  48 (defvar org-plot-timestamp-fmt nil)
  49
  50 (defun org-plot/add-options-to-plist (p options)
  51   "Parse an OPTIONS line and set values in the property list P.
  52 Returns the resulting property list."
  53   (let (o)
  54     (when options
  55       (let ((op '(("type"    . :plot-type)
  56                   ("script"  . :script)
  57                   ("line"    . :line)
  58                   ("set"     . :set)
  59                   ("title"   . :title)
  60                   ("ind"     . :ind)
  61                   ("deps"    . :deps)
  62                   ("with"    . :with)
  63                   ("file"    . :file)
  64                   ("labels"  . :labels)
  65                   ("map"     . :map)
  66                   ("timeind" . :timeind)
  67                   ("timefmt" . :timefmt)))
  68             (multiples '("set" "line"))
  69             (regexp ":\\([\"][^\"]+?[\"]\\|[(][^)]+?[)]\\|[^ \t\n\r;,.]*\\)")
  70             (start 0)
  71             o)
  72         (while (setq o (pop op))
  73           (if (member (car o) multiples) ;; keys with multiple values
  74               (while (string-match
  75                       (concat (regexp-quote (car o)) regexp)
  76                       options start)
  77                 (setq start (match-end 0))
  78                 (setq p (plist-put p (cdr o)
  79                                    (cons (car (read-from-string
  80                                                (match-string 1 options)))
  81                                          (plist-get p (cdr o)))))
  82                 p)
  83             (if (string-match (concat (regexp-quote (car o)) regexp)
  84                               options)
  85                 (setq p (plist-put p (cdr o)
  86                                    (car (read-from-string
  87                                          (match-string 1 options)))))))))))
  88   p)
  89
  90 (defun org-plot/goto-nearest-table ()
  91   "Move the point forward to the beginning of nearest table.
  92 Return value is the point at the beginning of the table."
  93   (interactive) (move-beginning-of-line 1)
  94   (while (not (or (org-at-table-p) (< 0 (forward-line 1)))))
  95   (goto-char (org-table-begin)))
  96
  97 (defun org-plot/collect-options (&optional params)
  98   "Collect options from an org-plot '#+Plot:' line.
  99 Accepts an optional property list PARAMS, to which the options
 100 will be added.  Returns the resulting property list."
 101   (interactive)
 102   (let ((line (thing-at-point 'line)))
 103     (if (string-match "#\\+PLOT: +\\(.*\\)$" line)
 104         (org-plot/add-options-to-plist params (match-string 1 line))
 105       params)))
 106
 107 (defun org-plot-quote-timestamp-field (s)
 108   "Convert field S from timestamp to Unix time and export to gnuplot."
 109   (format-time-string org-plot-timestamp-fmt (org-time-string-to-time s)))
 110
 111 (defun org-plot-quote-tsv-field (s)
 112   "Quote field S for export to gnuplot."
 113   (if (string-match org-table-number-regexp s) s
 114     (if (string-match org-ts-regexp3 s)
 115         (org-plot-quote-timestamp-field s)
 116       (concat "\"" (mapconcat 'identity (split-string s "\"") "\"\"") "\""))))
 117
 118 (defun org-plot/gnuplot-to-data (table data-file params)
 119   "Export TABLE to DATA-FILE in a format readable by gnuplot.
 120 Pass PARAMS through to `orgtbl-to-generic' when exporting TABLE."
 121   (with-temp-file
 122       data-file
 123     (make-local-variable 'org-plot-timestamp-fmt)
 124     (setq org-plot-timestamp-fmt (or
 125                                   (plist-get params :timefmt)
 126                                   "%Y-%m-%d-%H:%M:%S"))
 127     (insert (orgtbl-to-generic
 128              table
 129              (org-combine-plists
 130               '(:sep "\t" :fmt org-plot-quote-tsv-field)
 131               params))))
 132   nil)
 133
 134 (defun org-plot/gnuplot-to-grid-data (table data-file params)
 135   "Export the data in TABLE to DATA-FILE for gnuplot.
 136 This means in a format appropriate for grid plotting by gnuplot.
 137 PARAMS specifies which columns of TABLE should be plotted as independent
 138 and dependant variables."
 139   (interactive)
 140   (let* ((ind (- (plist-get params :ind) 1))
 141          (deps (if (plist-member params :deps)
 142                    (mapcar (lambda (val) (- val 1)) (plist-get params :deps))
 143                  (let (collector)
 144                    (dotimes (col (length (first table)))
 145                      (setf collector (cons col collector)))
 146                    collector)))
 147          row-vals (counter 0))
 148     (when (>= ind 0) ;; collect values of ind col
 149       (setf row-vals (mapcar (lambda (row) (setf counter (+ 1 counter))
 150                                (cons counter (nth ind row))) table)))
 151     (when (or deps (>= ind 0)) ;; remove non-plotting columns
 152       (setf deps (delq ind deps))
 153       (setf table (mapcar (lambda (row)
 154                             (dotimes (col (length row))
 155                               (unless (memq col deps)
 156                                 (setf (nth col row) nil)))
 157                             (delq nil row))
 158                           table)))
 159     ;; write table to gnuplot grid datafile format
 160     (with-temp-file data-file
 161       (let ((num-rows (length table)) (num-cols (length (first table)))
 162             front-edge back-edge)
 163         (flet ((gnuplot-row (col row value)
 164                             (setf col (+ 1 col)) (setf row (+ 1 row))
 165                             (format "%f  %f  %f\n%f  %f  %f\n"
 166                                     col (- row 0.5) value ;; lower edge
 167                                     col (+ row 0.5) value))) ;; upper edge
 168           (dotimes (col num-cols)
 169             (dotimes (row num-rows)
 170               (setf back-edge
 171                     (concat back-edge
 172                             (gnuplot-row (- col 1) row (string-to-number
 173                                                         (nth col (nth row table))))))
 174               (setf front-edge
 175                     (concat front-edge
 176                             (gnuplot-row col row (string-to-number
 177                                                   (nth col (nth row table)))))))
 178             ;; only insert once per row
 179             (insert back-edge) (insert "\n") ;; back edge
 180             (insert front-edge) (insert "\n") ;; front edge
 181             (setf back-edge "") (setf front-edge "")))))
 182     row-vals))
 183
 184 (defun org-plot/gnuplot-script (data-file num-cols params &optional preface)
 185   "Write a gnuplot script to DATA-FILE respecting the options set in PARAMS.
 186 NUM-COLS controls the number of columns plotted in a 2-d plot.
 187 Optional argument PREFACE returns only option parameters in a
 188 manner suitable for prepending to a user-specified script."
 189   (let* ((type (plist-get params :plot-type))
 190          (with (if (equal type 'grid)
 191                    'pm3d
 192                  (plist-get params :with)))
 193          (sets (plist-get params :set))
 194          (lines (plist-get params :line))
 195          (map (plist-get params :map))
 196          (title (plist-get params :title))
 197          (file (plist-get params :file))
 198          (ind (plist-get params :ind))
 199          (time-ind (plist-get params :timeind))
 200          (timefmt (plist-get params :timefmt))
 201          (text-ind (plist-get params :textind))
 202          (deps (if (plist-member params :deps) (plist-get params :deps)))
 203          (col-labels (plist-get params :labels))
 204          (x-labels (plist-get params :xlabels))
 205          (y-labels (plist-get params :ylabels))
 206          (plot-str "'%s' using %s%d%s with %s title '%s'")
 207          (plot-cmd (case type
 208                      ('2d "plot")
 209                      ('3d "splot")
 210                      ('grid "splot")))
 211          (script "reset") plot-lines)
 212     (flet ((add-to-script (line) (setf script (format "%s\n%s" script line))))
 213       (when file ;; output file
 214         (add-to-script (format "set term %s" (file-name-extension file)))
 215         (add-to-script (format "set output '%s'" file)))
 216       (case type ;; type
 217         ('2d ())
 218         ('3d (if map (add-to-script "set map")))
 219         ('grid (if map
 220                    (add-to-script "set pm3d map")
 221                  (add-to-script "set pm3d"))))
 222       (when title (add-to-script (format "set title '%s'" title))) ;; title
 223       (when lines (mapc (lambda (el) (add-to-script el)) lines)) ;; line
 224       (when sets ;; set
 225         (mapc (lambda (el) (add-to-script (format "set %s" el))) sets))
 226       (when x-labels ;; x labels (xtics)
 227         (add-to-script
 228          (format "set xtics (%s)"
 229                  (mapconcat (lambda (pair)
 230                               (format "\"%s\" %d" (cdr pair) (car pair)))
 231                             x-labels ", "))))
 232       (when y-labels ;; y labels (ytics)
 233         (add-to-script
 234          (format "set ytics (%s)"
 235                  (mapconcat (lambda (pair)
 236                               (format "\"%s\" %d" (cdr pair) (car pair)))
 237                             y-labels ", "))))
 238       (when time-ind ;; timestamp index
 239         (add-to-script "set xdata time")
 240         (add-to-script (concat "set timefmt \""
 241                                (or timefmt ;; timefmt passed to gnuplot
 242                                    "%Y-%m-%d-%H:%M:%S") "\"")))
 243       (unless preface
 244         (case type ;; plot command
 245         ('2d (dotimes (col num-cols)
 246                (unless (and (equal type '2d)
 247                             (or (and ind (equal (+ 1 col) ind))
 248                                 (and deps (not (member (+ 1 col) deps)))))
 249                  (setf plot-lines
 250                        (cons
 251                         (format plot-str data-file
 252                                 (or (and ind (> ind 0)
 253                                          (not text-ind)
 254                                          (format "%d:" ind)) "")
 255                                 (+ 1 col)
 256                                 (if text-ind (format ":xticlabel(%d)" ind) "")
 257                                 with
 258                                 (or (nth col col-labels) (format "%d" (+ 1 col))))
 259                         plot-lines)))))
 260         ('3d
 261          (setq plot-lines (list (format "'%s' matrix with %s title ''"
 262                                         data-file with))))
 263         ('grid
 264          (setq plot-lines (list (format "'%s' with %s title ''"
 265                                         data-file with)))))
 266         (add-to-script
 267          (concat plot-cmd " " (mapconcat 'identity (reverse plot-lines) ",\\\n    "))))
 268       script)))
 269
 270 ;;-----------------------------------------------------------------------------
 271 ;; facade functions
 272 ;;;###autoload
 273 (defun org-plot/gnuplot (&optional params)
 274   "Plot table using gnuplot.  Gnuplot options can be specified with PARAMS.
 275 If not given options will be taken from the +PLOT
 276 line directly before or after the table."
 277   (interactive)
 278   (require 'gnuplot)
 279   (save-window-excursion
 280     (delete-other-windows)
 281     (when (get-buffer "*gnuplot*") ;; reset *gnuplot* if it already running
 282       (with-current-buffer "*gnuplot*"
 283         (goto-char (point-max))
 284         (gnuplot-delchar-or-maybe-eof nil)))
 285     (org-plot/goto-nearest-table)
 286     ;; set default options
 287     (mapc
 288      (lambda (pair)
 289        (unless (plist-member params (car pair))
 290          (setf params (plist-put params (car pair) (cdr pair)))))
 291      org-plot/gnuplot-default-options)
 292     ;; collect table and table information
 293     (let* ((data-file (make-temp-file "org-plot"))
 294            (table (org-table-to-lisp))
 295            (num-cols (length (if (eq (first table) 'hline) (second table)
 296                                (first table)))))
 297       (while (equal 'hline (first table)) (setf table (cdr table)))
 298       (when (equal (second table) 'hline)
 299         (setf params (plist-put params :labels (first table))) ;; headers to labels
 300         (setf table (delq 'hline (cdr table)))) ;; clean non-data from table
 301       ;; collect options
 302       (save-excursion (while (and (equal 0 (forward-line -1))
 303                                   (looking-at "[[:space:]]*#\\+"))
 304                         (setf params (org-plot/collect-options params))))
 305       ;; dump table to datafile (very different for grid)
 306       (case (plist-get params :plot-type)
 307         ('2d   (org-plot/gnuplot-to-data table data-file params))
 308         ('3d   (org-plot/gnuplot-to-data table data-file params))
 309         ('grid (let ((y-labels (org-plot/gnuplot-to-grid-data
 310                                 table data-file params)))
 311                  (when y-labels (plist-put params :ylabels y-labels)))))
 312       ;; check for timestamp ind column
 313       (let ((ind (- (plist-get params :ind) 1)))
 314         (when (and (>= ind 0) (equal '2d (plist-get params :plot-type)))
 315           (if (= (length
 316                   (delq 0 (mapcar
 317                            (lambda (el)
 318                              (if (string-match org-ts-regexp3 el)
 319                                  0 1))
 320                            (mapcar (lambda (row) (nth ind row)) table)))) 0)
 321               (plist-put params :timeind t)
 322             ;; check for text ind column
 323             (if (or (string= (plist-get params :with) "hist")
 324                     (> (length
 325                         (delq 0 (mapcar
 326                                  (lambda (el)
 327                                    (if (string-match org-table-number-regexp el)
 328                                        0 1))
 329                                  (mapcar (lambda (row) (nth ind row)) table)))) 0))
 330                 (plist-put params :textind t)))))
 331       ;; write script
 332       (with-temp-buffer
 333         (if (plist-get params :script) ;; user script
 334             (progn (insert
 335                     (org-plot/gnuplot-script data-file num-cols params t))
 336                    (insert "\n")
 337                    (insert-file-contents (plist-get params :script))
 338                    (goto-char (point-min))
 339                    (while (re-search-forward "$datafile" nil t)
 340                      (replace-match data-file nil nil)))
 341           (insert
 342            (org-plot/gnuplot-script data-file num-cols params)))
 343         ;; graph table
 344         (gnuplot-mode)
 345         (gnuplot-send-buffer-to-gnuplot))
 346       ;; cleanup
 347       (bury-buffer (get-buffer "*gnuplot*"))
 348       (run-with-idle-timer 0.1 nil (lambda () (delete-file data-file))))))
 349
 350 (provide 'org-plot)
 351
 352 ;;; org-plot.el ends here