lisp/org/ob-gnuplot.el

   1 ;;; ob-gnuplot.el --- org-babel functions for gnuplot evaluation
   2
   3 ;; Copyright (C) 2009-2016 Free Software Foundation, Inc.
   4
   5 ;; Author: Eric Schulte
   6 ;; Keywords: literate programming, reproducible research
   7 ;; Homepage: http://orgmode.org
   8
   9 ;; This file is part of GNU Emacs.
  10
  11 ;; GNU Emacs is free software: you can redistribute it and/or modify
  12 ;; it under the terms of the GNU General Public License as published by
  13 ;; the Free Software Foundation, either version 3 of the License, or
  14 ;; (at your option) any later version.
  15
  16 ;; GNU Emacs is distributed in the hope that it will be useful,
  17 ;; but WITHOUT ANY WARRANTY; without even the implied warranty of
  18 ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  19 ;; GNU General Public License for more details.
  20
  21 ;; You should have received a copy of the GNU General Public License
  22 ;; along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>.
  23
  24 ;;; Commentary:
  25
  26 ;; Org-Babel support for evaluating gnuplot source code.
  27 ;;
  28 ;; This differs from most standard languages in that
  29 ;;
  30 ;; 1) we are generally only going to return results of type "file"
  31 ;;
  32 ;; 2) we are adding the "file" and "cmdline" header arguments
  33
  34 ;;; Requirements:
  35
  36 ;; - gnuplot :: http://www.gnuplot.info/
  37 ;;
  38 ;; - gnuplot-mode :: http://cars9.uchicago.edu/~ravel/software/gnuplot-mode.html
  39
  40 ;;; Code:
  41 (require 'ob)
  42 (eval-when-compile (require 'cl))
  43
  44 (declare-function org-time-string-to-time "org" (s &optional buffer pos))
  45 (declare-function org-combine-plists "org" (&rest plists))
  46 (declare-function orgtbl-to-generic "org-table"
  47                   (table params &optional backend))
  48 (declare-function gnuplot-mode "ext:gnuplot-mode" ())
  49 (declare-function gnuplot-send-string-to-gnuplot "ext:gnuplot-mode" (str txt))
  50 (declare-function gnuplot-send-buffer-to-gnuplot "ext:gnuplot-mode" ())
  51
  52 (defvar org-babel-default-header-args:gnuplot
  53   '((:results . "file") (:exports . "results") (:session . nil))
  54   "Default arguments to use when evaluating a gnuplot source block.")
  55
  56 (defvar org-babel-header-args:gnuplot
  57   '((title      . :any)
  58     (lines      . :any)
  59     (sets       . :any)
  60     (x-labels   . :any)
  61     (y-labels   . :any)
  62     (timefmt    . :any)
  63     (time-ind   . :any)
  64     (missing    . :any)
  65     (term       . :any))
  66   "Gnuplot specific header args.")
  67
  68 (defvar org-babel-gnuplot-timestamp-fmt nil)
  69
  70 (defvar *org-babel-gnuplot-missing* nil)
  71
  72 (defcustom *org-babel-gnuplot-terms*
  73   '((eps . "postscript eps"))
  74   "List of file extensions and the associated gnuplot terminal."
  75   :group 'org-babel
  76   :type '(repeat (cons (symbol :tag "File extension")
  77                        (string :tag "Gnuplot terminal"))))
  78
  79 (defun org-babel-gnuplot-process-vars (params)
  80   "Extract variables from PARAMS and process the variables.
  81 Dumps all vectors into files and returns an association list
  82 of variable names and the related value to be used in the gnuplot
  83 code."
  84   (let ((*org-babel-gnuplot-missing* (cdr (assoc :missing params))))
  85     (mapcar
  86      (lambda (pair)
  87        (cons
  88         (car pair) ;; variable name
  89         (let* ((val (cdr pair)) ;; variable value
  90                (lp  (listp val)))
  91           (if lp
  92               (org-babel-gnuplot-table-to-data
  93                (let* ((first  (car val))
  94                       (tablep (or (listp first) (symbolp first))))
  95                  (if tablep val (mapcar 'list val)))
  96                (org-babel-temp-file "gnuplot-") params)
  97           val))))
  98      (mapcar #'cdr (org-babel-get-header params :var)))))
  99
 100 (defun org-babel-expand-body:gnuplot (body params)
 101   "Expand BODY according to PARAMS, return the expanded body."
 102   (save-window-excursion
 103     (let* ((vars (org-babel-gnuplot-process-vars params))
 104            (out-file (cdr (assoc :file params)))
 105            (prologue (cdr (assoc :prologue params)))
 106            (epilogue (cdr (assoc :epilogue params)))
 107            (term (or (cdr (assoc :term params))
 108                      (when out-file
 109                        (let ((ext (file-name-extension out-file)))
 110                          (or (cdr (assoc (intern (downcase ext))
 111                                          *org-babel-gnuplot-terms*))
 112                              ext)))))
 113            (cmdline (cdr (assoc :cmdline params)))
 114            (title (cdr (assoc :title params)))
 115            (lines (cdr (assoc :line params)))
 116            (sets (cdr (assoc :set params)))
 117            (x-labels (cdr (assoc :xlabels params)))
 118            (y-labels (cdr (assoc :ylabels params)))
 119            (timefmt (cdr (assoc :timefmt params)))
 120            (time-ind (or (cdr (assoc :timeind params))
 121                          (when timefmt 1)))
 122            (missing (cdr (assoc :missing params)))
 123            (add-to-body (lambda (text) (setq body (concat text "\n" body))))
 124            output)
 125       ;; append header argument settings to body
 126       (when title (funcall add-to-body (format "set title '%s'" title)))
 127       (when lines (mapc (lambda (el) (funcall add-to-body el)) lines))
 128       (when missing
 129         (funcall add-to-body (format "set datafile missing '%s'" missing)))
 130       (when sets
 131         (mapc (lambda (el) (funcall add-to-body (format "set %s" el))) sets))
 132       (when x-labels
 133         (funcall add-to-body
 134                  (format "set xtics (%s)"
 135                          (mapconcat (lambda (pair)
 136                                       (format "\"%s\" %d"
 137                                               (cdr pair) (car pair)))
 138                                     x-labels ", "))))
 139       (when y-labels
 140         (funcall add-to-body
 141                  (format "set ytics (%s)"
 142                          (mapconcat (lambda (pair)
 143                                       (format "\"%s\" %d"
 144                                               (cdr pair) (car pair)))
 145                                     y-labels ", "))))
 146       (when time-ind
 147         (funcall add-to-body "set xdata time")
 148         (funcall add-to-body (concat "set timefmt \""
 149                                      (or timefmt
 150                                          "%Y-%m-%d-%H:%M:%S") "\"")))
 151       (when out-file
 152         ;; set the terminal at the top of the block
 153         (funcall add-to-body (format "set output \"%s\"" out-file))
 154         ;; and close the terminal at the bottom of the block
 155         (setq body (concat body "\nset output\n")))
 156       (when term (funcall add-to-body (format "set term %s" term)))
 157       ;; insert variables into code body: this should happen last
 158       ;; placing the variables at the *top* of the code in case their
 159       ;; values are used later
 160       (funcall add-to-body
 161                (mapconcat #'identity
 162                           (org-babel-variable-assignments:gnuplot params)
 163                           "\n"))
 164       ;; replace any variable names preceded by '$' with the actual
 165       ;; value of the variable
 166       (mapc (lambda (pair)
 167               (setq body (replace-regexp-in-string
 168                           (format "\\$%s" (car pair)) (cdr pair) body)))
 169             vars)
 170       (when prologue (funcall add-to-body prologue))
 171       (when epilogue (setq body (concat body "\n" epilogue))))
 172     body))
 173
 174 (defun org-babel-execute:gnuplot (body params)
 175   "Execute a block of Gnuplot code.
 176 This function is called by `org-babel-execute-src-block'."
 177   (require 'gnuplot)
 178   (let ((session (cdr (assoc :session params)))
 179         (result-type (cdr (assoc :results params)))
 180         (out-file (cdr (assoc :file params)))
 181         (body (org-babel-expand-body:gnuplot body params))
 182         output)
 183     (save-window-excursion
 184       ;; evaluate the code body with gnuplot
 185       (if (string= session "none")
 186           (let ((script-file (org-babel-temp-file "gnuplot-script-")))
 187             (with-temp-file script-file
 188               (insert (concat body "\n")))
 189             (message "gnuplot \"%s\"" script-file)
 190             (setq output
 191                   (shell-command-to-string
 192                    (format
 193                     "gnuplot \"%s\""
 194                     (org-babel-process-file-name
 195                      script-file
 196                      (if (member system-type '(cygwin windows-nt ms-dos))
 197                          t nil)))))
 198             (message output))
 199         (with-temp-buffer
 200           (insert (concat body "\n"))
 201           (gnuplot-mode)
 202           (gnuplot-send-buffer-to-gnuplot)))
 203       (if (member "output" (split-string result-type))
 204           output
 205         nil)))) ;; signal that output has already been written to file
 206
 207 (defun org-babel-prep-session:gnuplot (session params)
 208   "Prepare SESSION according to the header arguments in PARAMS."
 209   (let* ((session (org-babel-gnuplot-initiate-session session))
 210          (var-lines (org-babel-variable-assignments:gnuplot params)))
 211     (message "%S" session)
 212     (org-babel-comint-in-buffer session
 213       (mapc (lambda (var-line)
 214               (insert var-line) (comint-send-input nil t)
 215               (org-babel-comint-wait-for-output session)
 216               (sit-for .1) (goto-char (point-max))) var-lines))
 217     session))
 218
 219 (defun org-babel-load-session:gnuplot (session body params)
 220   "Load BODY into SESSION."
 221   (save-window-excursion
 222     (let ((buffer (org-babel-prep-session:gnuplot session params)))
 223       (with-current-buffer buffer
 224         (goto-char (process-mark (get-buffer-process (current-buffer))))
 225         (insert (org-babel-chomp body)))
 226       buffer)))
 227
 228 (defun org-babel-variable-assignments:gnuplot (params)
 229   "Return list of gnuplot statements assigning the block's variables."
 230   (mapcar
 231    (lambda (pair) (format "%s = \"%s\"" (car pair) (cdr pair)))
 232    (org-babel-gnuplot-process-vars params)))
 233
 234 (defvar gnuplot-buffer)
 235 (defun org-babel-gnuplot-initiate-session (&optional session params)
 236   "Initiate a gnuplot session.
 237 If there is not a current inferior-process-buffer in SESSION
 238 then create one.  Return the initialized session.  The current
 239 `gnuplot-mode' doesn't provide support for multiple sessions."
 240   (require 'gnuplot)
 241   (unless (string= session "none")
 242     (save-window-excursion
 243       (gnuplot-send-string-to-gnuplot "" "line")
 244       gnuplot-buffer)))
 245
 246 (defun org-babel-gnuplot-quote-timestamp-field (s)
 247   "Convert S from timestamp to Unix time and export to gnuplot."
 248   (format-time-string org-babel-gnuplot-timestamp-fmt
 249                       (org-time-string-to-time s)))
 250
 251 (defvar org-table-number-regexp)
 252 (defvar org-ts-regexp3)
 253 (defun org-babel-gnuplot-quote-tsv-field (s)
 254   "Quote S for export to gnuplot."
 255   (unless (stringp s)
 256     (setq s (format "%s" s)))
 257   (if (string-match org-table-number-regexp s) s
 258     (if (string-match org-ts-regexp3 s)
 259         (org-babel-gnuplot-quote-timestamp-field s)
 260       (if (zerop (length s))
 261           (or *org-babel-gnuplot-missing* s)
 262         (if (string-match "[ \"]" s)
 263             (concat "\"" (mapconcat 'identity (split-string s "\"") "\"\"")
 264                     "\"")
 265           s)))))
 266
 267 (defun org-babel-gnuplot-table-to-data (table data-file params)
 268   "Export TABLE to DATA-FILE in a format readable by gnuplot.
 269 Pass PARAMS through to `orgtbl-to-generic' when exporting TABLE."
 270   (with-temp-file data-file
 271     (make-local-variable 'org-babel-gnuplot-timestamp-fmt)
 272     (setq org-babel-gnuplot-timestamp-fmt (or
 273                                            (plist-get params :timefmt)
 274                                            "%Y-%m-%d-%H:%M:%S"))
 275     (insert (orgtbl-to-generic
 276              table
 277              (org-combine-plists
 278               '(:sep "\t" :fmt org-babel-gnuplot-quote-tsv-field)
 279               params))))
 280   data-file)
 281
 282 (provide 'ob-gnuplot)
 283
 284
 285
 286 ;;; ob-gnuplot.el ends here