updates for PhyML 3.0, patch courtesy Jessen Bredeson, refs issue #3226
tree0bcfc7f4eb05a452c47102ffc9e1ea2f0e8eee13
-rw-r--r-- 151 .gitignore
-rw-r--r-- 1170 AUTHORS
-rwxr-xr-x 3556 Build.PL
-rw-r--r-- 5761 Changes
-rw-r--r-- 6103 DEPENDENCIES
-rwxr-xr-x 3742 INSTALL
-rw-r--r-- 4528 INSTALL.PROGRAMS
-rw-r--r-- 17 INSTALL.SKIP
-rw-r--r-- 41656 LICENSE
-rw-r--r-- 531 README
drwxr-xr-x - lib
drwxr-xr-x - scripts
drwxr-xr-x - t