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some more Changes
2009-01-08
cjfields
* convert
to Bio::Root::Test
commit
|
commitdiff
|
tree
2009-01-08
cjf
i
elds
*
co
n
vert to Bio::Root
:
:Test
commit
|
commitdiff
|
tree
2009-01-07
cjf
i
elds
Gett
i
ng a fa
i
led t
e
st using lat
e
st Ens
E
MBL perl API
.
.
.
commit
|
commitdiff
|
tree
2009-01-07
c
j
fields
Catch version, skip test
s
if v
e
rsion isn't
su
p
porte
d
.
.
.
commit
|
commitdiff
|
tree
2008-11-14
cj
f
i
e
l
d
s
[
bug 2644]
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|
commitdiff
|
tree
2008-08-22
cjfields
* add_se
q
uenc
e
s
o
p
tion (adds se
q
uenc
e
s to an a
l
ignment
.
.
.
commit
|
commitdiff
|
tree
2008-07-30
c
j
fiel
d
s
patching the correct Primer3
.
pm (not Bio::Tools::
P
rimer3
.
p
m
)
commit
|
commitdiff
|
tree
2008-06-19
c
j
fie
l
ds
bug 2523
commit
|
commitdiff
|
tree
2008-04-15
c
jfields
U
p
date to 0
.
81
p
arams
.
Need
to
set up tests for this
.
.
.
commit
|
commitdiff
|
tree
2008-02-27
cjfield
s
bug 246
0
commit
|
commitdiff
|
tree
2008-01-15
cjfields
t
est
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|
commitdiff
|
tree
2007-07-16
cjfields
bug 2202
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|
commitdiff
|
tree
2007-07-16
cjfiel
d
s
bug 2299
commit
|
commitdiff
|
tree
2007-07-01
cjf
i
elds
bug 2299
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|
commitdiff
|
tree
2007-04-02
c
j
fiel
d
s
wrapper
f
o
r tRN
A
s
c
anSE
commit
|
commitdiff
|
tree
2007-03-30
cjfields
small
f
ix: RN
A
Motif can have empty fi
l
es
(
will
add
.
.
.
commit
|
commitdiff
|
tree
2007-03-29
cjfields
fix so
m
e
funkin
e
ss with pipes; may swi
t
ch
t
o IPC::Ru
n
.
.
.
commit
|
commitdiff
|
tree
2007-03-20
c
jfields
A
ll inferna
l
programs now work; needs some
more fine
.
.
.
commit
|
commitdiff
|
tree
2007-03-19
c
j
f
i
e
lds
bug
2241
commit
|
commitdiff
|
tree
2007-03-14
c
jfields
small
f
ixes
commit
|
commitdiff
|
tree
2007-03-13
cjfields
IPC::Run (required f
o
r
Glimmer, Ge
n
emark wrappers)
commit
|
commitdiff
|
tree
2007-03-13
cjfields
G
en
e
Mark, Glimmer wrapper modules, tests, and
t
e
st
.
.
.
commit
|
commitdiff
|
tree
2007-02-17
cjfiel
d
s
cmsea
r
ch n
o
ws works;
rest hopefully by Mon
.
commit
|
commitdiff
|
tree
2007-02-16
c
j
fi
e
l
ds
Inferna
l
wrap
p
er (not functional yet)
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|
commitdiff
|
tree
2007-02-07
cjfields
upd
a
te
s
and
s
mall tweak
s
commit
|
commitdiff
|
tree
2007-02-07
c
jfields
erpin w
r
apper
(n
e
eds more
w
ork
.
.
.
)
commit
|
commitdiff
|
tree
2007-02-05
c
j
fields
A
llow outfile or
tempfile (
f
or do
w
nstrea
m
w
o
rk)
commit
|
commitdiff
|
tree
2007-02-04
cjfields
obscure or
i
gins a
bit mor
e
(heh
e
he
commit
|
commitdiff
|
tree
2007-02-04
cjfields
RNA
M
otif t
o
o
l
s
w
rapper
commit
|
commitdiff
|
tree
2006-10-26
c
jfields
C
h
an
g
e to Test::More
commit
|
commitdiff
|
tree
2006-10-26
cjfields
Add Test:
:
More (
a
pparently wasn
'
t adde
d
)
commit
|
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|
tree
2006-10-26
cjfields
Ad
d
some POD fo
r
CLOSE()
commit
|
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|
tree
2006-10-26
cj
f
i
e
lds
A
dded CLOSE() t
i
ed fileh
a
nd
l
e method (bug 2126)
commit
|
commitdiff
|
tree
2006-10-13
cjf
i
elds
Re
v
ert tests; rep
e
ated c
a
lls now work (
e
xpected b
e
h
avior)
commit
|
commitdiff
|
tree
2006-10-10
cjfields
Fix tests; need to look at Analysi
s
::so
a
p::results()
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|
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|
tree
2006-07-11
cjfields
Bug 2040
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