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add an uppercase alias for db, tests pass
2010-11-05
Chris Fields
add an up
p
e
rc
a
se al
i
as
for db, tests pas
s
commit
|
commitdiff
|
tree
2010-11-05
Chris Fields
initial checkin of re
v
amped Blat w
r
apper
commit
|
commitdiff
|
tree
2010-08-05
Chris Fields
[bug 2
9
87] remove warning
(
p
a
tch courtesy Adam Witney
commit
|
commitdiff
|
tree
2010-07-23
Chris
Fi
e
lds
Revert "
a
dd dots param"
commit
|
commitdiff
|
tree
2010-07-23
Chris
Fields
add dots
p
aram
commit
|
commitdiff
|
tree
2010-07-23
Chr
i
s Fields
[RT 584
6
4
] patching
t
o allow file names with spaces
commit
|
commitdiff
|
tree
2010-07-05
Chri
s
Fields
small fixes, b
u
t th
e
previous c
o
de does wo
r
k w
h
e
n setting
.
.
.
commit
|
commitdiff
|
tree
2010-07-04
Chris Fields
s
p
ellin
g
commit
|
commitdiff
|
tree
2010-07-01
Chris Fie
l
d
s
move te
s
ts over
to
tempfile use
(tmpdir n
o
t
being
c
l
eaned up)
commit
|
commitdiff
|
tree
2010-07-01
Chris Fi
e
l
d
s
m
ove to temp
f
i
l
es
f
or clea
n
up
commit
|
commitdiff
|
tree
2010-07-01
Chris Fields
a
l
gorithm can be SSEA
R
CH as well; use test_output_f
i
le
.
.
.
commit
|
commitdiff
|
tree
2010-07-01
Chri
s
Fields
contigs o
f
f w
i
th Ubuntu p
a
ckag
e
d MAQ
commit
|
commitdiff
|
tree
2010-06-30
Chri
s
Fie
l
ds
no_sequenc
e
s -
>
num_sequences
commit
|
commitdiff
|
tree
2010-06-30
Chris
Fi
e
lds
some
tw
e
aks
t
o g
e
t rid of warnings
commit
|
commitdiff
|
tree
2010-06-30
Chris Fields
more
robu
s
t ca
l
l
t
o
ulimit
commit
|
commitdiff
|
tree
2010-06-30
Chris
F
ields
is(), not ok
(
)
commit
|
commitdiff
|
tree
2010-06-30
Ch
r
is Fields
skip if version gre
a
t
er than 1
.
2 (old primer3 code)
commit
|
commitdiff
|
tree
2010-06-30
Chris Fields
add version() (backpor
t
f
rom primer3r
e
dux)
commit
|
commitdiff
|
tree
2010-06-30
Chris
Fields
align
left
commit
|
commitdiff
|
tree
2010-06-30
Chris Fi
e
lds
fix odd verbos
i
ty-de
p
e
ndent bug w
i
th EMBOSS tests
commit
|
commitdiff
|
tree
2010-06-30
Ch
r
i
s Fields
add
m
in
i
mal gi
t
ignore
commit
|
commitdiff
|
tree
2010-06-30
Chris Fields
add ulimit -n check,
a
s t
h
ese tests
f
a
il from too
m
a
ny
.
.
.
commit
|
commitdiff
|
tree
2010-06-30
Chr
i
s Fields
add
e
mail
commit
|
commitdiff
|
tree
2010-06-30
Chri
s
Fields
corre
c
t sk
i
pped number of tests
commit
|
commitdiff
|
tree
2010-06-30
Chris
F
i
eld
s
skip test count
off, fixed
commit
|
commitdiff
|
tree
2010-06-30
C
h
ris
Fields
Merg
e
bra
n
ch 'master' of gi
t
hub
.
com:b
i
operl/biope
r
l-
r
un
commit
|
commitdiff
|
tree
2010-06-06
C
hris Fields
add
defa
u
l
t m
a
n
i
fest
commit
|
commitdiff
|
tree