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2009-07-04	cjfields	for cmcalibrate tests	commit \| commitdiff \| tree
2009-07-04	cjfields	more commits and tests; cmcalibrate works but commenting...	commit \| commitdiff \| tree
2009-07-03	cjfields	add some infernal data	commit \| commitdiff \| tree
2009-07-03	cjfields	add some infernal tests (data to follow)	commit \| commitdiff \| tree
2009-07-03	cjfields	[bug 2713]	commit \| commitdiff \| tree
2009-03-23	cjfields	[bug 2798]	commit \| commitdiff \| tree
2009-02-25	cjfields	fix test numbering	commit \| commitdiff \| tree
2009-02-14	cjfields	get Vista.t passing	commit \| commitdiff \| tree
2009-02-14	cjfields	fix for neg. scores (courtesy of Bruno Vecchi)	commit \| commitdiff \| tree
2009-02-12	cjfields	allow either primer3 or primer3_core	commit \| commitdiff \| tree
2009-02-10	cjfields	skip ConfigData for now	commit \| commitdiff \| tree
2009-02-09	cjfields	requires network connection to work	commit \| commitdiff \| tree
2009-02-05	cjfields	TODO now passes (thanks to Mahmut Uludag and Martin...	commit \| commitdiff \| tree
2009-02-03	cjfields	Fix Bio::DB::EUtilities (API changed considerably from...	commit \| commitdiff \| tree
2009-02-02	cjfields	version to 1.6.9 (pre-1.7)	commit \| commitdiff \| tree
2009-01-31	cjfields	switch to simple die	commit \| commitdiff \| tree
2009-01-31	cjfields	use eval to check for Bio::Root::Build, die gracefully	commit \| commitdiff \| tree
2009-01-31	cjfields	TCoffee now passes	commit \| commitdiff \| tree
2009-01-30	cjfields	remove debugging line	commit \| commitdiff \| tree
2009-01-30	cjfields	partial fix for TCoffee version above v5 (still breaking...	commit \| commitdiff \| tree
2009-01-30	cjfields	comma causing tests to fail on some systems if Java...	commit \| commitdiff \| tree
2009-01-29	cjfields	add some flexibility for older model names	commit \| commitdiff \| tree
2009-01-28	cjfields	small tweaks to primer3 (should try getting this to...	commit \| commitdiff \| tree
2009-01-27	cjfields	tweak error message	commit \| commitdiff \| tree
2009-01-27	cjfields	* newer versions of t_coffee failing this test, may...	commit \| commitdiff \| tree
2009-01-27	cjfields	* TODO failing AnalysisFactory_soap.t test (appears...	commit \| commitdiff \| tree
2009-01-27	cjfields	catch version if it contains alphanumeric	commit \| commitdiff \| tree
2009-01-13	cjfields	* small updates	commit \| commitdiff \| tree
2009-01-13	cjfields	Remove Pise-related stuff, update with other dependencies	commit \| commitdiff \| tree
2009-01-13	cjfields	Add DEPENDENCIES file.	commit \| commitdiff \| tree
2009-01-13	cjfields	Remove Pise-related examples (moved into bioperl-pise)	commit \| commitdiff \| tree
2009-01-13	cjfields	Remove Pise-related module (moved into bioperl-pise)	commit \| commitdiff \| tree
2009-01-13	cjfields	Remove Pise modules and tests (moved into bioperl-pise)	commit \| commitdiff \| tree
2009-01-13	cjfields	Remove Pise modules and tests (moved into bioperl-pise)	commit \| commitdiff \| tree
2009-01-10	cjfields	Don't TODO the test, actually attempt to run it and...	commit \| commitdiff \| tree
2009-01-10	cjfields	Actually make tests complete (not skipped if there...	commit \| commitdiff \| tree
2009-01-10	cjfields	TODO failing test (problem with SOAP protocol)	commit \| commitdiff \| tree
2009-01-10	cjfields	* finish up bioperl-run conversion	commit \| commitdiff \| tree
2009-01-08	cjfields	requires not required	commit \| commitdiff \| tree
2009-01-08	cjfields	* convert over to Bio::Root::Test and update some to...	commit \| commitdiff \| tree
2009-01-08	cjfields	* convert to Bio::Root::Test	commit \| commitdiff \| tree
2009-01-08	cjfields	* convert to Bio::Root::Test	commit \| commitdiff \| tree
2009-01-07	cjfields	Getting a failed test using latest EnsEMBL perl API...	commit \| commitdiff \| tree
2009-01-07	cjfields	Catch version, skip tests if version isn't supported...	commit \| commitdiff \| tree
2008-11-14	cjfields	[bug 2644]	commit \| commitdiff \| tree
2008-08-22	cjfields	* add_sequences option (adds sequences to an alignment...	commit \| commitdiff \| tree
2008-07-30	cjfields	patching the correct Primer3.pm (not Bio::Tools::Primer3.pm)	commit \| commitdiff \| tree
2008-06-19	cjfields	bug 2523	commit \| commitdiff \| tree
2008-04-15	cjfields	Update to 0.81 params. Need to set up tests for this...	commit \| commitdiff \| tree
2008-02-27	cjfields	bug 2460	commit \| commitdiff \| tree
2008-01-15	cjfields	test	commit \| commitdiff \| tree
2007-07-16	cjfields	bug 2202	commit \| commitdiff \| tree
2007-07-16	cjfields	bug 2299	commit \| commitdiff \| tree
2007-07-01	cjfields	bug 2299	commit \| commitdiff \| tree
2007-04-02	cjfields	wrapper for tRNAscanSE	commit \| commitdiff \| tree
2007-03-30	cjfields	small fix: RNAMotif can have empty files (will add...	commit \| commitdiff \| tree
2007-03-29	cjfields	fix some funkiness with pipes; may switch to IPC::Run...	commit \| commitdiff \| tree
2007-03-20	cjfields	All infernal programs now work; needs some more fine...	commit \| commitdiff \| tree
2007-03-19	cjfields	bug 2241	commit \| commitdiff \| tree
2007-03-14	cjfields	small fixes	commit \| commitdiff \| tree
2007-03-13	cjfields	IPC::Run (required for Glimmer, Genemark wrappers)	commit \| commitdiff \| tree
2007-03-13	cjfields	GeneMark, Glimmer wrapper modules, tests, and test...	commit \| commitdiff \| tree
2007-02-17	cjfields	cmsearch nows works; rest hopefully by Mon.	commit \| commitdiff \| tree
2007-02-16	cjfields	Infernal wrapper (not functional yet)	commit \| commitdiff \| tree
2007-02-07	cjfields	updates and small tweaks	commit \| commitdiff \| tree
2007-02-07	cjfields	erpin wrapper (needs more work...)	commit \| commitdiff \| tree
2007-02-05	cjfields	Allow outfile or tempfile (for downstream work)	commit \| commitdiff \| tree
2007-02-04	cjfields	obscure origins a bit more (hehehe	commit \| commitdiff \| tree
2007-02-04	cjfields	RNAMotif tools wrapper	commit \| commitdiff \| tree
2006-10-26	cjfields	Change to Test::More	commit \| commitdiff \| tree
2006-10-26	cjfields	Add Test::More (apparently wasn't added)	commit \| commitdiff \| tree
2006-10-26	cjfields	Add some POD for CLOSE()	commit \| commitdiff \| tree
2006-10-26	cjfields	Added CLOSE() tied filehandle method (bug 2126)	commit \| commitdiff \| tree
2006-10-13	cjfields	Revert tests; repeated calls now work (expected behavior)	commit \| commitdiff \| tree
2006-10-10	cjfields	Fix tests; need to look at Analysis::soap::results()	commit \| commitdiff \| tree
2006-07-11	cjfields	Bug 2040	commit \| commitdiff \| tree

BioPerl wrappers

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