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2002-03-05	jason	unlink test file output	commit \| commitdiff \| tree
2002-03-04	jason	added ability to dump alignments as well as sequences...	commit \| commitdiff \| tree
2002-02-18	jason	added example documentation to the POD	commit \| commitdiff \| tree
2002-02-18	jason	test for cmd line argument where value is a Bio::PrimarySeqI...	commit \| commitdiff \| tree
2002-02-18	jason	handle cmd line arguments pointing to a Bio::PrimarySeqI...	commit \| commitdiff \| tree
2002-02-06	jason	params should be appended not overwriting	commit \| commitdiff \| tree
2002-01-30	jason	verbosity=-1 is same as quiet()	commit \| commitdiff \| tree
2002-01-11	jason	debug message now uses the debug method	commit \| commitdiff \| tree
2002-01-09	jason	warn about not using old clustalw	commit \| commitdiff \| tree
2002-01-09	jason	use the updated PROGRAM exe location information to...	commit \| commitdiff \| tree
2002-01-09	jason	check to insure defined object before calling ISA	commit \| commitdiff \| tree
2001-12-14	jason	skip msg updated due to clustal 1.81 bug	commit \| commitdiff \| tree
2001-12-14	jason	nice message printing when blast is not runnable	commit \| commitdiff \| tree
2001-12-14	jason	more quiet warning so tests are less chatty	commit \| commitdiff \| tree
2001-12-14	jason	issue nice message when skipping EMBOSS tests	commit \| commitdiff \| tree
2001-12-14	jason	skip can print a nice message about why it skipped	commit \| commitdiff \| tree
2001-12-14	jason	emboss factory behaves more quietly when EMBOSS is...	commit \| commitdiff \| tree
2001-11-19	jason	EMBOSS more runnable and w/ tests	commit \| commitdiff \| tree
2001-08-10	jason	don't have clustalw tests fail for 0.9 release	commit \| commitdiff \| tree
2001-08-07	jason	documentation for retrieve_blast method	commit \| commitdiff \| tree
2001-06-15	jason	minium identity score required instead of hard value...	commit \| commitdiff \| tree
2001-06-14	jason	status set to invalid on a failed retrieval	commit \| commitdiff \| tree
2001-06-12	jason	using private state outside of class, must change the...	commit \| commitdiff \| tree
2001-04-30	jason	migrated test data files to dir t/data	commit \| commitdiff \| tree
2001-04-16	jason	Tests pass even when IO::String is not installed	commit \| commitdiff \| tree
2001-04-09	jason	updated to use ncbi Blast.cgi script rather than blast.cgi	commit \| commitdiff \| tree
2001-04-07	jason	updated num of tests	commit \| commitdiff \| tree
2001-04-07	jason	quieter tests when verbose == 0, use tempfile for HTML...	commit \| commitdiff \| tree
2001-04-07	jason	Pure perl (via HTTP) Remote blast submission and retrieval...	commit \| commitdiff \| tree
2001-04-07	jason	io was not initialized, meaning tempfiles were not...	commit \| commitdiff \| tree
2001-04-07	jason	io was not initialized, meaning tempfiles were not...	commit \| commitdiff \| tree
2001-02-28	jason	properly removing tempfiles	commit \| commitdiff \| tree
2001-02-26	jason	fixed TCoffee changes to properly output seqs to temp...	commit \| commitdiff \| tree
2001-02-19	jason	BPlite changes to make BPlite a SeqAnalysisParserI...	commit \| commitdiff \| tree
2001-01-25	jason	added Test.pm to lococal t dist	commit \| commitdiff \| tree
2001-01-08	jason	correct authors + email for consistency	commit \| commitdiff \| tree
2001-01-05	jason	migrated some tests over Test.pm, quieted some that...	commit \| commitdiff \| tree
2001-01-03	jason	migrated to new Bio::Root::RootI chained new	commit \| commitdiff \| tree
2001-01-03	jason	new tests, updated select	commit \| commitdiff \| tree
2000-12-18	jason	more intelligent detection of installed modules (File...	commit \| commitdiff \| tree
2000-12-18	jason	unlinking is not necessary now	commit \| commitdiff \| tree
2000-12-18	jason	extra documentation	commit \| commitdiff \| tree
2000-12-17	jason	cleanup tmp files until can make TCoffee behave	commit \| commitdiff \| tree
2000-12-17	jason	Fixed to PROPER usage of tempfile	commit \| commitdiff \| tree
2000-12-17	jason	renaming packages for new dir structure	commit \| commitdiff \| tree
2000-12-17	jason	migration of code to Tools::Run	commit \| commitdiff \| tree
2000-12-17	jason	migrated code that runs tools to Bio::Tools::Run	commit \| commitdiff \| tree
2000-12-01	jason	removing temporary output files	commit \| commitdiff \| tree
2000-11-22	jason	standardized tests	commit \| commitdiff \| tree
2000-10-11	jason	made test only slightly more flexible	commit \| commitdiff \| tree

BioPerl wrappers

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