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fix skip test count (off by 1)
2011-04-13
Chris Fields
fix s
k
ip test coun
t
(off
b
y 1)
commit
|
commitdiff
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tree
2011-04-13
Chr
i
s Fields
Merge branch 't
o
pic/bug_3196', fixes #3196 but needs
.
.
.
commit
|
commitdiff
|
tree
2011-04-13
Ch
r
is Fields
M
e
r
g
e remote
b
ranch 'wkretzsch/mast
e
r'
commit
|
commitdiff
|
tree
2011-02-14
Chri
s
Fiel
d
s
Merge branch 'm
a
ster' of git
h
u
b
.
com:bioper
l
/b
i
operl
.
.
.
commit
|
commitdiff
|
tree
2010-11-09
Chris
Fields
Merge branch
'to
p
ic/gjuggler_
t
r
e
e_fixes'
commit
|
commitdiff
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tree
2010-11-08
Chris Fields
Mer
g
e
branch 'master'
o
f
http
s
:/
/
g
i
t
hub
.
com/gj
u
ggler
.
.
.
commit
|
commitdiff
|
tree
2010-08-17
Chris Fi
e
lds
M
e
rge branch 'c
i
rcular'
commit
|
commitdiff
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tree
2010-07-29
Robert
B
uels
s
t
r
i
p keyword
s
ubstitution from perl
m
od
u
les
commit
|
commitdiff
|
tree
2010-07-23
C
hris Fields
[RT
5
8
46
4
]
patc
h
ing to all
o
w
file nam
e
s wi
t
h spaces
commit
|
commitdiff
|
tree
2010-07-23
Chris Fields
Merge branch 'topic/cjfields_inte
r
pr
o
_ge
t
_d
b
xref'
commit
|
commitdiff
|
tree
2010-07-03
Chris Fields
Merge
branch 'topi
c
/species_
p
roxy
'
commit
|
commitdiff
|
tree
2010-06-29
Chris Fiel
d
s
Me
r
ge branch 'master' into t
o
pi
c
/speci
e
s_
p
rox
y
commit
|
commitdiff
|
tree
2010-06-22
Chris Fi
e
l
ds
f
i
x conflict
commit
|
commitdiff
|
tree
2010-06-10
Chris Fields
Ben's changes t
o
fix bug with
f
ile, along with comment
.
.
.
commit
|
commitdiff
|
tree
2010-06-07
C
hris Fiel
d
s
M
erge branch 'topic/bug3
0
89'
commit
|
commitdiff
|
tree
2010-06-06
Chr
i
s Fields
Me
r
ge Brian's b
r
an
c
h
commit
|
commitdiff
|
tree
2010-06-04
Chris Fields
M
e
rge bra
n
ch
'
mas
t
er' of gith
u
b
.
com:b
i
operl/bio
p
e
r
l
.
.
.
commit
|
commitdiff
|
tree
2010-05-25
Chr
i
s Fields
Merge branch 'master
'
of
github
.
c
o
m:bio
p
erl/
b
ioper
l
.
.
.
commit
|
commitdiff
|
tree
2010-05-20
Chris Fields
can
'
t
lookup a
n
undefined v
a
l
u
e
a
s
an e
x
e
c
utable
commit
|
commitdiff
|
tree
2010-05-20
Chris Fie
l
ds
Merge
bra
n
ch
'm
a
ster' of github
.
com:bioperl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-20
Chris Fields
Merge br
a
nch 'master' of github
.
c
o
m:bioperl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-17
Chris Fields
M
e
rge branc
h
'master' of git@g
i
t
hub
.
c
o
m:bioperl/b
i
operl
.
.
.
commit
|
commitdiff
|
tree
2010-05-10
cjfields
make test less prone
to
volatile changes
commit
|
commitdiff
|
tree
2010-03-06
cjfiel
d
s
fix remoteblast pa
r
sing (almost complete refact
o
r of
.
.
.
commit
|
commitdiff
|
tree
2010-03-05
cjfields
next, not redo
commit
|
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|
tree
2010-03-04
cjfields
A
d
d
a finit
e
number of attempts for rep
o
rt retrieval
commit
|
commitdiff
|
tree
2010-03-04
cjf
i
elds
re
m
ote
B
LAST i
s
timing
out when using CDD
a
n
d
rpsblast
commit
|
commitdiff
|
tree
2009-11-25
cjfields
a
d
d n pa
r
a
met
e
r
(not t
e
sted) courtesy Nevo Band (not
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
cjfields
[cage cle
a
ning]
commit
|
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|
tree
2009-07-03
cjfields
c
a
tch ed
g
e cases where we
u
nint
e
ntiona
l
ly
pa
s
s
a
n undef
.
.
.
commit
|
commitdiff
|
tree
2009-05-04
c
j
f
i
eld
s
minor for
m
atting f
i
x
commit
|
commitdiff
|
tree
2009-02-23
cjfie
l
ds
fir
s
t p
a
ss at a
K
om
o
do BioPerl te
m
plate file
commit
|
commitdiff
|
tree
2009-01-15
cjfields
Don't
q
uot
e
m
e
ta if usi
n
g Windows
commit
|
commitdiff
|
tree
2008-12-20
cjfields
remove BPlit
e
te
s
ts comple
t
ely
commit
|
commitdiff
|
tree
2008-12-20
c
j
fiel
d
s
Remove B
P
lite fro
m
use
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2707]
commit
|
commitdiff
|
tree
2008-12-03
cj
f
ields
R
e
organize Tools tests (
n
eeds some m
o
r
e
splittin
g
)
commit
|
commitdiff
|
tree
2008-11-28
cjfields
move into di
r
ec
t
ory
s
t
r
u
c
tur
e
commit
|
commitdiff
|
tree
2008-11-25
c
jfields
po, not
poa
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|
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2008-11-25
cjfields
split u
p
Al
i
gn
I
O tests
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|
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|
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2008-11-17
cjfields
[tests]
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|
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2008-02-11
cjfields
rem
o
ve comment (make
sure tempfile/tempdirs stored
.
.
.
commit
|
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|
tree
2008-02-11
c
j
fields
Fix
for bug 24
1
3
.
S
h
ouldn't we
d
el
e
gate al
l
IO
-
related
.
.
.
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|
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|
tree
2007-10-23
c
j
fields
bug 2367
commit
|
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2007-07-06
cjfie
l
ds
Must allow other SearchIO readmethods
(anything
t
hat
.
.
.
commit
|
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|
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2007-01-19
cjfields
change
F
i
le::
P
ath
v
erbosity
t
o only b
e
TRUE when debugging
commit
|
commitdiff
|
tree
2007-01-18
c
j
fi
e
l
ds
r
e
m
ove comments; cleanup()
s
hould now wor
k
(f
i
ngers
.
.
.
commit
|
commitdiff
|
tree
2007-01-18
cjfields
revert back to normal
f
rom
d
ebugging
commit
|
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|
tree
2007-01-18
c
j
f
ields
Bug 2183
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