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fix skip test count (off by 1)
2011-04-13
Chr
i
s
Fiel
d
s
f
i
x skip
tes
t
count (off by
1)
commit
|
commitdiff
|
tree
2011-04-13
C
h
r
i
s Fields
Me
r
ge
branch 'topic/bug_3196', fixes #3196 but needs
.
.
.
commit
|
commitdiff
|
tree
2011-04-13
Chris
Field
s
Merge
remote branch 'wkretzsc
h
/ma
s
ter'
commit
|
commitdiff
|
tree
2011-02-14
Chris Fields
Merge branch '
m
aster' o
f
g
ithub
.
com:bioperl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2010-11-09
Chris Fields
Mer
g
e branch 'topic/
g
jug
g
ler_tree
_
fixes'
commit
|
commitdiff
|
tree
2010-11-08
Chris Fields
Merge branch 'maste
r
' of
h
ttps://github
.
co
m
/gjuggler
.
.
.
commit
|
commitdiff
|
tree
2010-08-17
Chri
s
F
ields
Me
r
g
e
b
r
anch 'cir
c
ular'
commit
|
commitdiff
|
tree
2010-07-23
Chris Fields
[RT 58
4
64] patching to allow file names w
i
th spaces
commit
|
commitdiff
|
tree
2010-07-23
Chris Fie
l
ds
Mer
g
e b
r
anch 'topic/cjfie
l
ds_interp
r
o
_get
_
dbx
r
ef'
commit
|
commitdiff
|
tree
2010-07-03
Chris Fi
e
l
d
s
Merge bran
c
h 'top
i
c
/
species_proxy'
commit
|
commitdiff
|
tree
2010-06-29
Ch
r
is F
i
elds
Merge bra
n
c
h 'master' into to
p
ic/sp
e
cies_pr
o
xy
commit
|
commitdiff
|
tree
2010-06-22
Chris
Field
s
fix
con
f
li
c
t
commit
|
commitdiff
|
tree
2010-06-10
Chr
i
s Fields
Ben's changes to fix bug with fi
l
e, a
l
ong with comment
.
.
.
commit
|
commitdiff
|
tree
2010-06-07
Chris F
i
elds
M
e
rge branch 't
o
pic
/
bug3089
'
commit
|
commitdiff
|
tree
2010-06-06
Chris Fields
Merg
e
Brian's branch
commit
|
commitdiff
|
tree
2010-06-04
C
h
ris Fi
e
lds
M
erge branch 'master' of gi
t
hub
.
com:biop
e
rl/
b
ioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-25
Chr
i
s
Fi
e
lds
Merge branch 'master
'
o
f github
.
com:bioperl/
b
ioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-20
Chris Fields
can't lookup an undef
i
ned va
l
ue as
a
n execu
t
able
commit
|
commitdiff
|
tree
2010-05-20
Chris Fields
M
e
r
ge branch 'master'
o
f github
.
com:biope
r
l
/
bi
o
per
l
.
.
.
commit
|
commitdiff
|
tree
2010-05-20
Chr
i
s
Fields
Merge branch '
m
aster' of githu
b
.
c
om:bioperl/bi
o
perl
.
.
.
commit
|
commitdiff
|
tree
2010-05-17
Chris
F
ields
M
erge branch
'master' o
f
g
i
t
@github
.
co
m
:bioper
l
/bioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-10
c
j
fields
make test le
s
s prone to volat
i
le changes
commit
|
commitdiff
|
tree
2010-03-06
cjfie
l
d
s
fix
rem
o
teb
l
ast parsing
(
a
lmost comple
t
e refactor of
.
.
.
commit
|
commitdiff
|
tree
2010-03-05
c
j
fields
nex
t
, not redo
commit
|
commitdiff
|
tree
2010-03-04
cjf
i
e
lds
Add a
f
inite number of attempts for report retrieva
l
commit
|
commitdiff
|
tree
2010-03-04
cjfields
remote BLAST
i
s timing out when
u
sing CDD and rpsbla
s
t
commit
|
commitdiff
|
tree
2009-11-25
cjfields
a
d
d n para
m
eter (not
teste
d
) courtesy Nevo Band (
n
ot
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
c
jfields
[cage
cle
a
ning
]
commit
|
commitdiff
|
tree
2009-07-03
cjfields
catch edge cases where we
unintentionally pass a
n
undef
.
.
.
commit
|
commitdiff
|
tree
2009-05-04
cjfields
minor formatting fix
commit
|
commitdiff
|
tree
2009-02-23
cjfields
first pass at a Komodo BioPerl template fil
e
commit
|
commitdiff
|
tree
2009-01-15
c
j
fi
e
lds
Don't
q
uotemeta if u
s
ing Wi
n
dows
commit
|
commitdiff
|
tree
2008-12-20
c
j
fields
remo
v
e
BPlite tests completely
commit
|
commitdiff
|
tree
2008-12-20
cjfields
Remove BPlite from use
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
elds
[b
u
g 2707
]
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
Reorganize To
o
l
s tes
t
s (ne
e
ds
s
ome mor
e
splitting)
commit
|
commitdiff
|
tree
2008-11-28
cjfi
e
lds
mov
e
into
directory structure
commit
|
commitdiff
|
tree
2008-11-25
cj
f
ields
p
o
,
n
ot
p
oa
commit
|
commitdiff
|
tree
2008-11-25
cjfie
l
ds
split up AlignI
O
tests
commit
|
commitdiff
|
tree
2008-11-17
cjfields
[tests]
commit
|
commitdiff
|
tree
2008-02-11
cjfie
l
ds
remove co
m
ment (mak
e
s
u
re temp
f
i
le/t
e
m
p
dir
s
stored
.
.
.
commit
|
commitdiff
|
tree
2008-02-11
cjfields
Fix for bug 241
3
.
Sho
u
ldn't
we delegate all IO-rela
t
ed
.
.
.
commit
|
commitdiff
|
tree
2007-10-23
cjfie
l
ds
bug 2367
commit
|
commitdiff
|
tree
2007-07-06
c
j
fields
Must allow o
t
h
e
r SearchIO read
m
e
t
hods
(anything that
.
.
.
commit
|
commitdiff
|
tree
2007-01-19
cjfields
change
Fi
l
e
:
:
Path
v
erbosity to only be
T
RUE when debuggin
g
commit
|
commitdiff
|
tree
2007-01-18
cjfields
rem
o
ve
co
m
ments
;
c
leanup()
should
n
o
w w
o
rk (fin
g
ers
.
.
.
commit
|
commitdiff
|
tree
2007-01-18
cjfields
r
evert back t
o
no
r
mal from d
e
buggi
n
g
commit
|
commitdiff
|
tree
2007-01-18
cjfields
Bug 2183
commit
|
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|
tree