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Merge branch 'master' of https://github.com/fgvieira/bioperl-live into topic/pull_req...
2011-12-09
Chris F
i
elds
Me
r
ge branch
'master' of https://github
.
com/fg
v
i
e
ira
.
.
.
commit
|
commitdiff
|
tree
2011-11-29
Chris Fiel
d
s
Merge branch 'embl
_
wr
i
te_id_li
n
e_fix'
commit
|
commitdiff
|
tree
2011-10-28
Chri
s
Fields
Merge
pull request #26
f
rom fgvieira/master
commit
|
commitdiff
|
tree
2011-10-24
Chris Fi
e
l
d
s
Merge br
a
nc
h
'
mas
t
er' of
g
ithub
.
c
om:
b
iope
r
l/b
i
o
p
erl
.
.
.
commit
|
commitdiff
|
tree
2011-09-29
Chris F
i
elds
Merg
e
branch
'
master'
of gi
t
hub
.
com:bioperl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2011-09-22
Chris Fields
M
e
rg
e
pull
r
e
q
uest #
2
4 from carand
r
aug/b
p
_genba
n
k_ref_extractor
commit
|
commitdiff
|
tree
2011-07-26
Chris
Field
s
Merge pull request
#19 fr
o
m carandraug/script/extract_featur
.
.
.
commit
|
commitdiff
|
tree
2011-07-25
Chris
F
i
elds
M
e
rge p
u
ll reque
s
t
#18 fr
o
m carandraug/script/perl
.
.
.
commit
|
commitdiff
|
tree
2011-07-25
Chris Fie
l
ds
Merge pu
l
l request #17 from carandraug/
m
aste
r
commit
|
commitdiff
|
tree
2011-06-20
C
hris Fields
Me
r
ge pull request
#
16
fr
o
m
chadadavis/m
a
ster
commit
|
commitdiff
|
tree
2011-06-02
Chris Fields
Merge pull r
e
quest #15 from tupinek/master
commit
|
commitdiff
|
tree
2011-05-10
Chr
i
s Fields
fix s
p
elli
n
g
e
rrors, fixes
#3228
commit
|
commitdiff
|
tree
2011-04-13
Chris
Fields
fix skip test
count (of
f
by 1)
commit
|
commitdiff
|
tree
2011-04-13
C
hris Fields
Me
r
ge bran
c
h 'topi
c
/bu
g
_3196
'
, fixes #3196 b
u
t nee
d
s
.
.
.
commit
|
commitdiff
|
tree
2011-04-13
Chris
Fields
Merge remote bran
c
h
'
wkretzsch/master'
commit
|
commitdiff
|
tree
2011-02-14
C
h
ris F
i
elds
Merge br
a
n
c
h 'm
a
ster' of
github
.
co
m
:
bioperl/biope
r
l
.
.
.
commit
|
commitdiff
|
tree
2010-11-09
Chris Fields
Merge branch 'topic
/
g
j
uggler_tree
_
f
i
x
es'
commit
|
commitdiff
|
tree
2010-11-08
Chris Fields
Merge branch 'master' of https://
g
ithub
.
com/gjuggler
.
.
.
commit
|
commitdiff
|
tree
2010-08-17
Chris Fie
l
ds
Merge branch 'circular'
commit
|
commitdiff
|
tree
2010-07-29
Robe
r
t Buels
strip keyword substitution from per
l
modules
commit
|
commitdiff
|
tree
2010-07-23
Chr
i
s F
i
elds
[RT 58
4
64] patching to allo
w
file n
a
mes with space
s
commit
|
commitdiff
|
tree
2010-07-23
Chris Fie
l
ds
Mer
g
e
b
ranch
'topic
/
cjfields_interpro_get_
d
bxr
e
f'
commit
|
commitdiff
|
tree
2010-07-03
C
h
ris Fields
Mer
g
e
branch 'topic/species_proxy'
commit
|
commitdiff
|
tree
2010-06-29
Chris F
i
elds
Me
r
ge
b
ranch '
m
aster'
i
nto to
p
ic/spec
i
es_proxy
commit
|
commitdiff
|
tree
2010-06-22
C
h
ris Fiel
d
s
fix conflict
commit
|
commitdiff
|
tree
2010-06-10
C
hris
F
ields
B
e
n
's changes to fi
x
bug with file
,
a
lo
n
g
with comment
.
.
.
commit
|
commitdiff
|
tree
2010-06-07
Ch
r
is
Fields
Me
r
ge branch 'topi
c
/bug3
0
89'
commit
|
commitdiff
|
tree
2010-06-06
Chris Fie
l
ds
Merge Brian's branch
commit
|
commitdiff
|
tree
2010-06-04
Chris
F
i
e
l
d
s
Merge branch 'm
a
ster' of gi
t
hub
.
com
:
bioperl/biop
e
rl
.
.
.
commit
|
commitdiff
|
tree
2010-05-25
Chris Fie
l
ds
Merg
e
branch 'master' of gi
t
h
ub
.
com:bioperl/biope
r
l
.
.
.
commit
|
commitdiff
|
tree
2010-05-20
Chris Fields
ca
n
't l
o
o
k
up an undefined v
a
lue as an
executable
commit
|
commitdiff
|
tree
2010-05-20
Chris
F
ields
Merge branch
'
master
'
o
f github
.
c
o
m:bioperl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-20
Chris Fields
Merge br
a
nch
'
m
a
ster
'
o
f
github
.
com:bi
o
perl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-17
C
hris Fields
M
erge b
r
a
nch 'master' of git@github
.
com:bi
o
perl/bioper
l
.
.
.
commit
|
commitdiff
|
tree
2010-05-10
cjfields
make test l
e
s
s
prone to
v
olatil
e
c
h
a
nges
commit
|
commitdiff
|
tree
2010-03-06
cjfields
fix remoteblast pars
i
n
g
(almost complete refactor of
.
.
.
commit
|
commitdiff
|
tree
2010-03-05
cjfield
s
n
e
xt, not r
e
do
commit
|
commitdiff
|
tree
2010-03-04
cjfields
A
d
d
a
f
inite number of attempts for repo
r
t retrieval
commit
|
commitdiff
|
tree
2010-03-04
cjfields
remote BLAST is timing out
wh
e
n
u
sing
CDD
a
nd rps
b
las
t
commit
|
commitdiff
|
tree
2009-11-25
cjfields
add
n param
e
te
r
(not tes
t
ed)
courte
s
y
N
evo Band (no
t
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
cjfie
l
ds
[cage cle
a
ning]
commit
|
commitdiff
|
tree
2009-07-03
cjfi
e
lds
c
atch edge cases whe
r
e we un
i
ntentionally pass
an undef
.
.
.
commit
|
commitdiff
|
tree
2009-05-04
cjfields
minor formatting
f
ix
commit
|
commitdiff
|
tree
2009-02-23
cjfields
f
i
r
s
t p
a
ss at a
K
om
o
d
o Bi
o
Perl temp
l
ate file
commit
|
commitdiff
|
tree
2009-01-15
cjfiel
d
s
D
o
n'
t
quotemeta
if usin
g
Windows
commit
|
commitdiff
|
tree
2008-12-20
c
j
fields
remove
B
P
l
ite tests completely
commit
|
commitdiff
|
tree
2008-12-20
cjfield
s
R
e
m
ove BPlite from us
e
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2707]
commit
|
commitdiff
|
tree
2008-12-03
c
jfi
e
lds
Reorgani
z
e
Tools t
e
st
s
(needs
s
o
me m
o
re
spl
i
tting)
commit
|
commitdiff
|
tree
2008-11-28
cjfie
l
ds
m
ove i
n
to direct
o
r
y structure
commit
|
commitdiff
|
tree
2008-11-25
cjfields
po, not poa
commit
|
commitdiff
|
tree
2008-11-25
c
jf
i
elds
split up Al
i
g
n
IO tests
commit
|
commitdiff
|
tree
2008-11-17
c
jfields
[te
s
ts]
commit
|
commitdiff
|
tree
2008-02-11
cjfields
remove comment (m
a
ke su
r
e
t
empfile/te
m
pdir
s
s
t
ored
.
.
.
commit
|
commitdiff
|
tree
2008-02-11
cjfields
Fix for bug 2413
.
Shouldn
'
t we de
l
e
g
ate all IO-relat
e
d
.
.
.
commit
|
commitdiff
|
tree
2007-10-23
c
j
fields
bug
2
367
commit
|
commitdiff
|
tree
2007-07-06
c
jfie
l
ds
Must allow other SearchIO read
m
e
t
hod
s
(anything th
a
t
.
.
.
commit
|
commitdiff
|
tree
2007-01-19
cjfields
change F
i
le::Path ve
r
bosity to only be TRUE whe
n
d
e
bugging
commit
|
commitdiff
|
tree
2007-01-18
cjfields
r
e
m
ove comment
s
;
cleanup()
should now w
o
rk
(fin
g
ers
.
.
.
commit
|
commitdiff
|
tree
2007-01-18
cjfields
re
v
ert back to normal from de
b
u
g
ging
commit
|
commitdiff
|
tree
2007-01-18
cjfields
Bug 2183
commit
|
commitdiff
|
tree