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Merge pull request #2 from chadadavis/skip-na-tests
2009-01-13
cjfields
Remove Pise m
o
d
u
l
e
s and test
s
(
mov
e
d into bioperl-pise)
commit
|
commitdiff
|
tree
2009-01-13
cjfields
R
e
m
o
ve Pi
s
e modules and tes
t
s (moved into bioperl
-
p
i
se)
commit
|
commitdiff
|
tree
2009-01-10
cj
f
ields
Don
'
t
T
ODO the
test, a
c
tually attempt to r
u
n it and
.
.
.
commit
|
commitdiff
|
tree
2009-01-10
cjfields
Actua
l
ly
m
ake tests complete
(
n
ot skipped if there
.
.
.
commit
|
commitdiff
|
tree
2009-01-10
cjf
i
elds
TODO
failing te
s
t (pro
b
l
e
m with SOAP p
r
o
tocol)
commit
|
commitdiff
|
tree
2009-01-10
c
j
f
ie
l
ds
* finish up bioperl-run conversion
commit
|
commitdiff
|
tree
2009-01-08
cjfi
e
lds
requires no
t
re
q
uir
e
d
commit
|
commitdiff
|
tree
2009-01-08
cjfields
* c
o
nvert over to B
i
o
::Root::Test
an
d
updat
e
some to
.
.
.
commit
|
commitdiff
|
tree
2009-01-08
cjf
i
el
d
s
* convert to Bio::Root::Tes
t
commit
|
commitdiff
|
tree
2009-01-08
cjfields
*
c
onvert to
B
i
o
::Root::Test
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|
commitdiff
|
tree
2009-01-07
cjfield
s
G
e
tting a failed test using latest EnsEMBL p
e
rl
API
.
.
.
commit
|
commitdiff
|
tree
2009-01-07
c
j
fields
C
a
tch versi
o
n, skip tests if version i
s
n't supported
.
.
.
commit
|
commitdiff
|
tree
2008-11-14
cjfields
[b
u
g 2644]
commit
|
commitdiff
|
tree
2008-08-22
cjfie
l
ds
* add_s
e
quences option (adds seq
u
ences
to an alignment
.
.
.
commit
|
commitdiff
|
tree
2008-07-30
c
j
fields
patching the correct Primer3
.
p
m
(not
Bio::
T
ools::Primer3
.
pm)
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|
commitdiff
|
tree
2008-06-19
cjf
i
elds
b
u
g 2523
commit
|
commitdiff
|
tree
2008-04-15
cjfie
l
ds
Update to
0
.
8
1
pa
r
a
m
s
.
N
eed to set up tests for
thi
s
.
.
.
commit
|
commitdiff
|
tree
2008-02-27
cjfields
bug 2460
commit
|
commitdiff
|
tree
2008-01-15
c
jfields
test
commit
|
commitdiff
|
tree
2007-07-16
cjfields
bug 2
2
02
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|
commitdiff
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tree
2007-07-16
cjfields
bug 2299
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|
commitdiff
|
tree
2007-07-01
cjfiel
d
s
bug 2299
commit
|
commitdiff
|
tree
2007-04-02
cj
f
ield
s
wr
a
pper for tR
N
AscanSE
commit
|
commitdiff
|
tree
2007-03-30
cjfields
smal
l
fix: RNAMotif can
h
a
ve emp
t
y
f
i
les (will add
.
.
.
commit
|
commitdiff
|
tree
2007-03-29
cjfields
fix som
e
funki
n
ess w
i
th pipes; may switch t
o
IPC::Run
.
.
.
commit
|
commitdiff
|
tree
2007-03-20
cjfields
A
ll infernal programs now
w
o
r
k;
n
eed
s
some mo
r
e fine
.
.
.
commit
|
commitdiff
|
tree
2007-03-19
cjfields
bug 2241
commit
|
commitdiff
|
tree
2007-03-14
cjfields
sma
l
l
f
ixes
commit
|
commitdiff
|
tree
2007-03-13
cj
f
ields
IPC::Ru
n
(required
f
or
Glimmer, Genemark
wrappers)
commit
|
commitdiff
|
tree
2007-03-13
cjfields
GeneMar
k
, Glimmer
w
rap
p
er mod
u
les, test
s
, and test
.
.
.
commit
|
commitdiff
|
tree
2007-02-17
cjfi
e
ld
s
cmsearch nows works;
rest hopefully by
Mon
.
commit
|
commitdiff
|
tree
2007-02-16
cjfi
e
lds
Inferna
l
wrapper (not
f
u
nctional yet)
commit
|
commitdiff
|
tree
2007-02-07
cjfields
updates
a
nd small tweaks
commit
|
commitdiff
|
tree
2007-02-07
c
j
fiel
d
s
er
p
in
wrappe
r
(needs more w
o
r
k
.
.
.
)
commit
|
commitdiff
|
tree
2007-02-05
cjfields
Allow outfile
or
t
empfile (for
do
w
n
s
tream
w
ork)
commit
|
commitdiff
|
tree
2007-02-04
cjfields
o
b
s
cure origins a b
i
t more (hehehe
commit
|
commitdiff
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2007-02-04
cjfield
s
RNAMotif tools wra
p
per
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|
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|
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2006-10-26
cjfields
Change
t
o Test::More
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|
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|
tree
2006-10-26
cjfi
e
lds
Add Test::Mor
e
(apparently was
n
't added)
commit
|
commitdiff
|
tree
2006-10-26
cjfie
l
ds
Add som
e
P
O
D for CLOSE()
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|
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|
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2006-10-26
cjfie
l
ds
Add
e
d CLOSE() tied filehandle method (bug 2126)
commit
|
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|
tree
2006-10-13
c
j
fields
Revert tes
t
s; repeate
d
calls
n
ow work (ex
p
ected behavior)
commit
|
commitdiff
|
tree
2006-10-10
cjfields
Fix test
s
; n
e
ed
t
o look at Analysi
s
::soap::resu
l
ts()
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|
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|
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2006-07-11
c
j
f
ields
B
u
g
2
040
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