repo.or.cz
/
bioperl-run.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
Merge pull request #2 from chadadavis/skip-na-tests
2009-01-13
cjfields
Re
m
ove Pi
s
e modules
and tests (moved into bi
o
perl-pise)
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Re
m
o
v
e
Pise modul
e
s a
n
d tests
(m
o
ved into biope
r
l-pise)
commit
|
commitdiff
|
tree
2009-01-10
cjfi
e
lds
Don't TODO the
t
est, ac
t
ually attempt t
o
ru
n
it and
.
.
.
commit
|
commitdiff
|
tree
2009-01-10
cjfi
e
lds
A
c
t
u
ally make tes
t
s complete (not skipped
if there
.
.
.
commit
|
commitdiff
|
tree
2009-01-10
cjfields
TOD
O
failing te
s
t
(
probl
e
m
with
S
OAP protocol)
commit
|
commitdiff
|
tree
2009-01-10
cjfields
* finish
u
p biope
r
l-run con
v
e
r
s
ion
commit
|
commitdiff
|
tree
2009-01-08
cjfie
l
ds
requires not re
q
uired
commit
|
commitdiff
|
tree
2009-01-08
cjf
i
elds
*
c
onvert over to Bio::Root
:
:Test
and
u
p
d
ate some to
.
.
.
commit
|
commitdiff
|
tree
2009-01-08
cjfields
* convert t
o
Bio::Root::Test
commit
|
commitdiff
|
tree
2009-01-08
c
j
fields
* con
v
ert to Bio::Root::Test
commit
|
commitdiff
|
tree
2009-01-07
cjfi
e
lds
Getting a failed
test using latest EnsEMBL perl API
.
.
.
commit
|
commitdiff
|
tree
2009-01-07
cjf
i
elds
C
atch v
e
rsion, skip test
s
if versi
o
n isn't supp
o
rted
.
.
.
commit
|
commitdiff
|
tree
2008-11-14
cjfields
[b
u
g 2644]
commit
|
commitdiff
|
tree
2008-08-22
c
j
f
i
eld
s
* add_seq
u
ences opt
i
on (adds sequenc
e
s
t
o
an alignment
.
.
.
commit
|
commitdiff
|
tree
2008-07-30
cjfields
pat
c
hing the correct Prim
e
r3
.
pm (not Bio::Tools::
P
rimer3
.
p
m)
commit
|
commitdiff
|
tree
2008-06-19
c
j
fi
e
lds
bug 2523
commit
|
commitdiff
|
tree
2008-04-15
cjfields
Update to
0
.
8
1 par
a
ms
.
Need
t
o set up te
s
ts for this
.
.
.
commit
|
commitdiff
|
tree
2008-02-27
cjfiel
d
s
bug 246
0
commit
|
commitdiff
|
tree
2008-01-15
cjfields
test
commit
|
commitdiff
|
tree
2007-07-16
cjfields
bu
g
22
0
2
commit
|
commitdiff
|
tree
2007-07-16
cjfields
bug 2299
commit
|
commitdiff
|
tree
2007-07-01
cjfields
bu
g
2
2
99
commit
|
commitdiff
|
tree
2007-04-02
cjfields
wr
a
pper
fo
r
t
R
NAs
c
anSE
commit
|
commitdiff
|
tree
2007-03-30
cj
f
i
e
lds
s
mall fix
:
RNAMotif can
h
ave empty file
s
(
wil
l
add
.
.
.
commit
|
commitdiff
|
tree
2007-03-29
c
jfields
fix some
f
u
nkiness w
i
th pipes;
m
ay switch to I
P
C
:
:Ru
n
.
.
.
commit
|
commitdiff
|
tree
2007-03-20
cjfie
l
ds
Al
l
in
f
ernal progr
a
ms now
w
ork; needs som
e
more fine
.
.
.
commit
|
commitdiff
|
tree
2007-03-19
cjfields
b
u
g
2
241
commit
|
commitdiff
|
tree
2007-03-14
cjfields
small fixes
commit
|
commitdiff
|
tree
2007-03-13
cjfie
l
d
s
IPC:
:
Run
(required for
G
limmer, Genemark wrappers)
commit
|
commitdiff
|
tree
2007-03-13
cjfie
l
ds
GeneMark, Glimmer
wrapper modules, tests
,
and test
.
.
.
commit
|
commitdiff
|
tree
2007-02-17
cjfields
cmse
a
rch nows works; rest hopefully by Mon
.
commit
|
commitdiff
|
tree
2007-02-16
cjfiel
d
s
Infernal wrapp
e
r (not functional
yet)
commit
|
commitdiff
|
tree
2007-02-07
c
j
fields
u
pdates
a
n
d small twe
a
ks
commit
|
commitdiff
|
tree
2007-02-07
cjfi
e
ld
s
erpin wr
a
pper (ne
e
ds
m
ore w
o
r
k
.
.
.
)
commit
|
commitdiff
|
tree
2007-02-05
c
j
f
ields
Allow outfile or tempf
i
le (for
d
owns
t
re
a
m work)
commit
|
commitdiff
|
tree
2007-02-04
c
jfields
obsc
u
re orig
i
ns a bit
m
ore (h
e
hehe
commit
|
commitdiff
|
tree
2007-02-04
cj
f
ield
s
RNAM
o
tif
t
ools
wrap
p
er
commit
|
commitdiff
|
tree
2006-10-26
cjfields
Chang
e
to
Test::More
commit
|
commitdiff
|
tree
2006-10-26
cjfields
Add Test::More (apparentl
y
wasn
'
t added)
commit
|
commitdiff
|
tree
2006-10-26
cjfields
Add som
e
POD for CLOS
E
()
commit
|
commitdiff
|
tree
2006-10-26
cjfields
Added CLOSE() tied fileh
a
ndle me
t
h
od (bug 2126)
commit
|
commitdiff
|
tree
2006-10-13
cjfields
Reve
r
t tes
t
s
;
repeated ca
l
ls no
w
work (
e
xpected behavior)
commit
|
commitdiff
|
tree
2006-10-10
cjfields
Fix te
s
t
s; n
e
ed to loo
k
at Analysis
:
:soa
p
:
:
results()
commit
|
commitdiff
|
tree
2006-07-11
cjfie
l
ds
Bug 2040
commit
|
commitdiff
|
tree