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update tests for perl 5.18
2013-05-21
Ch
r
is F
i
e
lds
upd
a
te t
e
sts
fo
r
p
e
rl 5
.
18
commit
|
commitdiff
|
tree
2013-02-20
Ch
r
is
Fi
e
l
ds
Merge branch 'master' of
g
i
t
hub
.
c
o
m:bio
p
erl/bi
o
perl
.
.
.
commit
|
commitdiff
|
tree
2013-02-19
Chris Fields
M
erge bra
n
ch 'v1'
commit
|
commitdiff
|
tree
2013-02-19
Ch
r
i
s
F
ields
M
e
r
ge b
r
anch
'v1'
commit
|
commitdiff
|
tree
2012-10-01
C
h
ris Fields
sq
u
ash a couple of warnings with more re
c
ent ver
s
ions
.
.
.
commit
|
commitdiff
|
tree
2012-07-26
Chri
s
Fi
e
lds
merge Peter's changes
i
n
commit
|
commitdiff
|
tree
2012-07-09
Chr
i
s Fiel
d
s
Merg
e
bran
c
h
't
o
p
i
c/eutils-migr
a
tion'
commit
|
commitdiff
|
tree
2012-05-26
Ch
r
is Field
s
Mer
g
e
p
u
ll
r
equest
#
34
from
TristanLefeb
u
re/
c
odonbs
commit
|
commitdiff
|
tree
2012-01-21
Chris Fields
Merge p
u
ll requ
e
s
t
#32 from
f
schwach/mas
t
er
commit
|
commitdiff
|
tree
2012-01-13
Chris Fields
Merge
p
u
ll reque
s
t
#
31 from fsch
w
ach/master
commit
|
commitdiff
|
tree
2011-12-09
Chris
F
i
eld
s
Merge
p
u
l
l re
q
ues
t
#29 fro
m
wk
r
e
t
z
sch/mas
t
e
r
commit
|
commitdiff
|
tree
2011-12-09
Ch
r
is Fields
M
er
g
e
b
ranc
h
'master' of ht
t
ps://github
.
c
om
/
f
gviei
r
a
.
.
.
commit
|
commitdiff
|
tree
2011-11-29
Ch
r
is Fields
Merge bran
c
h 'embl_wri
t
e_id_line_fix'
commit
|
commitdiff
|
tree
2011-10-28
Chr
i
s F
i
elds
Merge pull req
u
es
t
#26
f
rom
f
gvieira/
m
a
ster
commit
|
commitdiff
|
tree
2011-10-24
Chris
F
ields
M
e
rge
b
ran
c
h 'm
a
ster' of
g
ithub
.
com:
b
ioperl/bio
p
erl
.
.
.
commit
|
commitdiff
|
tree
2011-09-29
Chris
F
i
el
d
s
M
erge branch
'master' of github
.
com:bioperl/bioper
l
.
.
.
commit
|
commitdiff
|
tree
2011-09-22
Chris
F
ields
Merge
pull
r
e
quest #24
from cara
n
d
raug/bp_genb
a
nk_ref_ext
r
actor
commit
|
commitdiff
|
tree
2011-07-26
Chris Fiel
d
s
Me
r
ge p
u
l
l
request #19 from car
a
ndraug/script/extract_featur
.
.
.
commit
|
commitdiff
|
tree
2011-07-25
C
h
ris Fields
Merge
pu
l
l request #18
f
rom carandraug/script
/
perl
.
.
.
commit
|
commitdiff
|
tree
2011-07-25
Chris Fields
Merge pul
l
req
u
est #
1
7
f
rom car
a
n
drau
g
/
master
commit
|
commitdiff
|
tree
2011-06-20
Chris Fie
l
ds
Me
r
ge pull reque
s
t #16 fr
o
m chadada
v
is
/
mas
t
er
commit
|
commitdiff
|
tree
2011-06-02
Chris Fields
M
e
r
ge p
u
ll request #15
f
rom tupinek
/
master
commit
|
commitdiff
|
tree
2011-05-10
Chris F
i
e
l
d
s
fix s
p
e
l
ling err
o
r
s, fixe
s
#3228
commit
|
commitdiff
|
tree
2011-04-13
Chris Fi
e
lds
fix
s
kip test
c
ount (off by 1)
commit
|
commitdiff
|
tree
2011-04-13
Chris Fi
e
l
d
s
Merge
bra
n
c
h
'
top
i
c/b
u
g
_
3
1
9
6',
fixes
#
3196 but n
e
eds
.
.
.
commit
|
commitdiff
|
tree
2011-04-13
Chris Field
s
Merge remote branch 'wkretzsch/m
a
ster'
commit
|
commitdiff
|
tree
2011-02-14
Chris F
i
elds
Merg
e
branch 'master' of gi
t
h
ub
.
com:bi
o
perl/bioper
l
.
.
.
commit
|
commitdiff
|
tree
2010-11-09
Chris Fields
Merge branch 'topic/gj
u
ggler_tree_fixes'
commit
|
commitdiff
|
tree
2010-11-08
Chr
i
s Fields
Merge branch 'master' o
f
h
t
t
p
s://github
.
com/gju
g
gler
.
.
.
commit
|
commitdiff
|
tree
2010-08-17
Chris F
i
eld
s
Merge branch 'cir
c
ular'
commit
|
commitdiff
|
tree
2010-07-29
R
obert Buels
strip
keyword substitut
i
on
from perl modules
commit
|
commitdiff
|
tree
2010-07-23
Ch
r
is Fields
[RT 58464] patc
h
ing to allo
w
f
i
l
e n
a
mes w
i
th spaces
commit
|
commitdiff
|
tree
2010-07-23
Chri
s
Fields
Me
r
ge b
r
anch 'to
p
ic/cjfields_inte
r
pro_get_dbxref'
commit
|
commitdiff
|
tree
2010-07-03
Chris Fields
Merge
bra
n
ch 'topic/spe
c
ies_proxy'
commit
|
commitdiff
|
tree
2010-06-29
Chris
Fiel
d
s
Merge branch
'
master' into topic/spe
c
ies_proxy
commit
|
commitdiff
|
tree
2010-06-22
Chr
i
s
Fie
l
ds
fi
x
c
o
n
flic
t
commit
|
commitdiff
|
tree
2010-06-10
Ch
r
i
s
F
iel
d
s
Ben's changes to fix bu
g
with fi
l
e, along with comment
.
.
.
commit
|
commitdiff
|
tree
2010-06-07
Chri
s
Fi
e
lds
Merge bran
c
h
'
t
opic/bug3089'
commit
|
commitdiff
|
tree
2010-06-06
Chr
i
s Fields
M
erge Brian's
branch
commit
|
commitdiff
|
tree
2010-06-04
Ch
r
is Fields
Merge branch 'master' o
f
g
ithub
.
c
o
m:bioperl/bio
p
erl
.
.
.
commit
|
commitdiff
|
tree
2010-05-25
Chri
s
Fields
Merge branc
h
'm
a
ster' of g
i
thub
.
com:bioperl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-20
C
h
r
is Fi
e
lds
can't looku
p
an undefine
d
value
a
s
a
n executable
commit
|
commitdiff
|
tree
2010-05-20
Chri
s
Field
s
Merge branch '
m
a
ster' of
g
ithub
.
com:bioper
l
/bioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-20
Chris Fields
Merge bra
n
ch 'mas
t
e
r
' of github
.
com:bioperl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-17
Chris
F
ield
s
Merge branch '
m
as
t
er' of
g
i
t
@githu
b
.
c
om:bioperl
/
bioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-10
cjfields
make test less pron
e
to vol
a
tile changes
commit
|
commitdiff
|
tree
2010-03-06
cjfields
fix
r
e
m
oteblast par
s
ing (almost
c
omplete ref
a
ctor of
.
.
.
commit
|
commitdiff
|
tree
2010-03-05
cjfields
n
e
x
t,
not redo
commit
|
commitdiff
|
tree
2010-03-04
c
j
f
ields
Ad
d
a
f
inite number
of at
t
e
m
pts for r
e
po
r
t
retrie
v
al
commit
|
commitdiff
|
tree
2010-03-04
cj
f
ields
r
e
mote BLAST is t
i
m
ing out
w
hen u
s
i
ng C
D
D and rpsbl
a
st
commit
|
commitdiff
|
tree
2009-11-25
c
jfi
e
lds
a
d
d
n
parameter (n
o
t
tested)
cou
r
tes
y
Nevo
B
and (n
o
t
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
cjfields
[
c
age cleaning]
commit
|
commitdiff
|
tree
2009-07-03
c
jfie
l
ds
catch ed
g
e ca
s
es wher
e
we uninte
n
t
ionally pass an u
n
def
.
.
.
commit
|
commitdiff
|
tree
2009-05-04
cjfield
s
minor formatting
f
ix
commit
|
commitdiff
|
tree
2009-02-23
cjfields
first pass at a Komodo BioPerl templa
t
e fil
e
commit
|
commitdiff
|
tree
2009-01-15
cjfields
Don'
t
quo
t
emet
a
if using Windo
w
s
commit
|
commitdiff
|
tree
2008-12-20
cjfiel
d
s
remove BPlite
t
ests completel
y
commit
|
commitdiff
|
tree
2008-12-20
c
j
fields
Remove BPlite from u
s
e
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2707]
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Reorganize Tools tests (n
e
eds some m
o
re
s
p
l
i
tti
n
g
)
commit
|
commitdiff
|
tree
2008-11-28
cjfield
s
move into directory
s
tru
c
ture
commit
|
commitdiff
|
tree
2008-11-25
cjfi
e
l
d
s
po, not poa
commit
|
commitdiff
|
tree
2008-11-25
c
j
fields
spl
i
t
up Ali
g
nIO tests
commit
|
commitdiff
|
tree
2008-11-17
cjfi
e
l
d
s
[
te
s
ts]
commit
|
commitdiff
|
tree
2008-02-11
cjfi
e
lds
rem
o
v
e
com
m
ent (ma
k
e sure tempf
i
le/tempd
i
rs stored
.
.
.
commit
|
commitdiff
|
tree
2008-02-11
cjfield
s
Fix for bug 2413
.
Shoul
d
n't we d
e
legate al
l
IO-related
.
.
.
commit
|
commitdiff
|
tree
2007-10-23
cjfields
bug 2
3
6
7
commit
|
commitdiff
|
tree
2007-07-06
cjfields
Must a
l
low
other SearchIO readmet
h
ods (anything t
h
at
.
.
.
commit
|
commitdiff
|
tree
2007-01-19
cjfields
change Fi
l
e
::Path verbosi
t
y to only be T
R
U
E
when debugging
commit
|
commitdiff
|
tree
2007-01-18
c
j
field
s
remo
v
e comm
e
nts; c
l
eanup() should no
w
work (finge
r
s
.
.
.
commit
|
commitdiff
|
tree
2007-01-18
cjfields
revert
back to
n
ormal from
d
ebuggi
n
g
commit
|
commitdiff
|
tree
2007-01-18
cjfields
Bug
2
183
commit
|
commitdiff
|
tree