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allow other SearchIO formats and parameters (though axt and sim4 are not working...
2010-11-05
C
h
ri
s
F
i
elds
allow
oth
e
r SearchIO
f
or
m
ats
a
nd
p
a
r
a
meters
(though
.
.
.
commit
|
commitdiff
|
tree
2010-11-05
Chris Fie
l
ds
test
s
for
r
e
gions, requi
r
e a
.
2b
i
t dat
a
base so only
.
.
.
commit
|
commitdiff
|
tree
2010-11-05
Chris Fields
a
d
d
an u
p
percase alias
f
o
r
db, tests pa
s
s
commit
|
commitdiff
|
tree
2010-11-05
Ch
r
is Fields
i
nitial
c
heckin of revamped Bla
t
wrappe
r
commit
|
commitdiff
|
tree
2010-08-05
Chris Fi
e
lds
[bug 2
9
87] remov
e
warning (patch courtes
y
Ad
a
m Wi
t
ney
commit
|
commitdiff
|
tree
2010-07-23
Chris Fields
Revert
"ad
d
dot
s
param"
commit
|
commitdiff
|
tree
2010-07-23
Chris Fields
add dots
p
a
ram
commit
|
commitdiff
|
tree
2010-07-23
Chris Fields
[R
T
5
8464] patchin
g
to allow
file na
m
es with
s
paces
commit
|
commitdiff
|
tree
2010-07-05
Chr
i
s Field
s
small fixes, but
t
he pr
e
vious code does
work w
h
e
n
setting
.
.
.
commit
|
commitdiff
|
tree
2010-07-04
Chris Fields
spelling
commit
|
commitdiff
|
tree
2010-07-01
C
hris Field
s
move tests over to te
m
pfile us
e
(
t
mpdir not being cleaned
up)
commit
|
commitdiff
|
tree
2010-07-01
C
h
ris Fi
e
lds
move to
tempfiles for cleanup
commit
|
commitdiff
|
tree
2010-07-01
C
h
ris Fields
a
l
gorithm can be S
S
EARCH as well
;
use
t
e
st_ou
t
put_file
.
.
.
commit
|
commitdiff
|
tree
2010-07-01
Chris Fields
contigs o
f
f with Ubuntu packaged MAQ
commit
|
commitdiff
|
tree
2010-06-30
Chris Fields
no_sequences -> num
_
s
equences
commit
|
commitdiff
|
tree
2010-06-30
Chris Fields
some
t
weaks to
get rid of wa
r
nings
commit
|
commitdiff
|
tree
2010-06-30
Chris Fields
more robust
call to ulimit
commit
|
commitdiff
|
tree
2010-06-30
Chris Fields
is(), not ok()
commit
|
commitdiff
|
tree
2010-06-30
C
h
ris Fields
ski
p
if version gr
e
ater than 1
.
2 (old
primer3 code)
commit
|
commitdiff
|
tree
2010-06-30
Ch
r
is F
i
elds
ad
d
v
e
rsi
o
n()
(
bac
k
p
o
rt
f
rom primer3redux)
commit
|
commitdiff
|
tree
2010-06-30
Chris
Fields
align left
commit
|
commitdiff
|
tree
2010-06-30
Chris
Fields
fix od
d
ve
r
b
osity-depende
n
t bug with
E
M
BOSS tests
commit
|
commitdiff
|
tree
2010-06-30
Chr
i
s Fields
add
minim
a
l giti
g
nore
commit
|
commitdiff
|
tree
2010-06-30
C
h
ris Fiel
d
s
add
ulim
i
t -n check, as these t
e
sts f
a
il
f
r
om too man
y
.
.
.
commit
|
commitdiff
|
tree
2010-06-30
Chri
s
Fields
ad
d
email
commit
|
commitdiff
|
tree
2010-06-30
Chris Fi
e
lds
correct
s
kippe
d
nu
m
ber
of tests
commit
|
commitdiff
|
tree
2010-06-30
C
hris Field
s
skip test coun
t
off, fixed
commit
|
commitdiff
|
tree
2010-06-30
Chr
i
s Fields
Merge branch 'master' of github
.
c
om:bi
o
p
e
r
l
/bioperl
-
r
u
n
commit
|
commitdiff
|
tree
2010-06-06
Chris
Fields
add de
f
a
ult manifes
t
commit
|
commitdiff
|
tree