Public Git Hosting - bioperl-run.git/search

2010-11-05	Chris Fields	remove cruft, gunge, and implement searchio()	commit \| commitdiff \| tree
2010-11-05	Chris Fields	allow other SearchIO formats and parameters (though...	commit \| commitdiff \| tree
2010-11-05	Chris Fields	tests for regions, require a .2bit database so only...	commit \| commitdiff \| tree
2010-11-05	Chris Fields	add an uppercase alias for db, tests pass	commit \| commitdiff \| tree
2010-11-05	Chris Fields	initial checkin of revamped Blat wrapper	commit \| commitdiff \| tree
2010-08-05	Chris Fields	[bug 2987] remove warning (patch courtesy Adam Witney	commit \| commitdiff \| tree
2010-07-23	Chris Fields	Revert "add dots param"	commit \| commitdiff \| tree
2010-07-23	Chris Fields	add dots param	commit \| commitdiff \| tree
2010-07-23	Chris Fields	[RT 58464] patching to allow file names with spaces	commit \| commitdiff \| tree
2010-07-05	Chris Fields	small fixes, but the previous code does work when setting...	commit \| commitdiff \| tree
2010-07-04	Chris Fields	spelling	commit \| commitdiff \| tree
2010-07-01	Chris Fields	move tests over to tempfile use (tmpdir not being cleaned up)	commit \| commitdiff \| tree
2010-07-01	Chris Fields	move to tempfiles for cleanup	commit \| commitdiff \| tree
2010-07-01	Chris Fields	algorithm can be SSEARCH as well; use test_output_file...	commit \| commitdiff \| tree
2010-07-01	Chris Fields	contigs off with Ubuntu packaged MAQ	commit \| commitdiff \| tree
2010-06-30	Chris Fields	no_sequences -> num_sequences	commit \| commitdiff \| tree
2010-06-30	Chris Fields	some tweaks to get rid of warnings	commit \| commitdiff \| tree
2010-06-30	Chris Fields	more robust call to ulimit	commit \| commitdiff \| tree
2010-06-30	Chris Fields	is(), not ok()	commit \| commitdiff \| tree
2010-06-30	Chris Fields	skip if version greater than 1.2 (old primer3 code)	commit \| commitdiff \| tree
2010-06-30	Chris Fields	add version() (backport from primer3redux)	commit \| commitdiff \| tree
2010-06-30	Chris Fields	align left	commit \| commitdiff \| tree
2010-06-30	Chris Fields	fix odd verbosity-dependent bug with EMBOSS tests	commit \| commitdiff \| tree
2010-06-30	Chris Fields	add minimal gitignore	commit \| commitdiff \| tree
2010-06-30	Chris Fields	add ulimit -n check, as these tests fail from too many...	commit \| commitdiff \| tree
2010-06-30	Chris Fields	add email	commit \| commitdiff \| tree
2010-06-30	Chris Fields	correct skipped number of tests	commit \| commitdiff \| tree
2010-06-30	Chris Fields	skip test count off, fixed	commit \| commitdiff \| tree
2010-06-30	Chris Fields	Merge branch 'master' of github.com:bioperl/bioperl-run	commit \| commitdiff \| tree
2010-06-06	Chris Fields	add default manifest	commit \| commitdiff \| tree

BioPerl wrappers

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