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Remove Pise-related stuff, update with other dependencies
2009-01-13
cjfields
Remove Pis
e
-relate
d
stuff, update with o
t
h
e
r
dep
e
nde
n
cies
commit
|
commitdiff
|
tree
2009-01-13
c
j
f
i
e
lds
Add
DEPENDENCIES file
.
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Remove Pis
e
-related ex
a
mples (moved into bi
o
perl-pise)
commit
|
commitdiff
|
tree
2009-01-13
cjfi
e
lds
Remove
Pis
e
-related module (mo
v
ed int
o
bioperl-pise)
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Remove
P
ise mod
u
les
a
nd tests (moved into bioperl-pise)
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Remo
v
e
P
i
se modules and
t
ests (mo
v
ed into
b
ioperl-pise)
commit
|
commitdiff
|
tree
2009-01-10
c
j
fields
D
o
n't TODO the test,
actually atte
m
pt to run i
t
and
.
.
.
commit
|
commitdiff
|
tree
2009-01-10
c
jfields
Actually
mak
e
t
ests complete (no
t
skippe
d
if
ther
e
.
.
.
commit
|
commitdiff
|
tree
2009-01-10
cjf
i
elds
TODO fai
l
ing test (pro
b
l
e
m with SOAP pr
o
t
oc
o
l
)
commit
|
commitdiff
|
tree
2009-01-10
cjfi
e
lds
*
f
inish up bioper
l
-run
c
on
v
ersion
commit
|
commitdiff
|
tree
2009-01-08
cjfi
e
l
d
s
r
equires not required
commit
|
commitdiff
|
tree
2009-01-08
cjf
i
e
l
ds
* convert
o
ver to Bio::
R
oot::Test and up
d
ate
so
m
e to
.
.
.
commit
|
commitdiff
|
tree
2009-01-08
cjfields
* conver
t
to Bio::Root::Test
commit
|
commitdiff
|
tree
2009-01-08
cjfields
*
c
onvert to Bio::
R
oot::Test
commit
|
commitdiff
|
tree
2009-01-07
cjfields
Getting a
f
a
iled test using latest EnsEMBL
p
e
r
l
A
PI
.
.
.
commit
|
commitdiff
|
tree
2009-01-07
cjfiel
d
s
C
atch
versi
o
n, ski
p
tests if version isn't supp
o
rted
.
.
.
commit
|
commitdiff
|
tree
2008-11-14
cjfields
[bug 2644]
commit
|
commitdiff
|
tree
2008-08-22
c
j
f
i
e
l
d
s
* add_s
e
quences option (adds sequen
c
es to an alignment
.
.
.
commit
|
commitdiff
|
tree
2008-07-30
cjfields
pat
c
hing th
e
correc
t
Pri
m
er3
.
pm
(
not Bio::T
o
o
ls::Primer3
.
p
m
)
commit
|
commitdiff
|
tree
2008-06-19
cjfield
s
bug 2523
commit
|
commitdiff
|
tree
2008-04-15
cjfields
U
p
date to
0
.
8
1 params
.
Need to set up tests for
th
i
s
.
.
.
commit
|
commitdiff
|
tree
2008-02-27
cjfie
l
d
s
bug
2
460
commit
|
commitdiff
|
tree
2008-01-15
cjfields
te
s
t
commit
|
commitdiff
|
tree
2007-07-16
cjfiel
d
s
bug
2
202
commit
|
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tree
2007-07-16
cjfiel
d
s
bug 229
9
commit
|
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tree
2007-07-01
c
j
f
ields
bug 229
9
commit
|
commitdiff
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tree
2007-04-02
cjfields
wrapp
e
r for tRNAscan
S
E
commit
|
commitdiff
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tree
2007-03-30
c
jfie
l
ds
s
m
all fix: RNAMotif can have
e
mpty
files (will a
d
d
.
.
.
commit
|
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tree
2007-03-29
c
j
fields
fix some
f
u
nkiness with pipes
;
may
s
witch to IPC:
:
Run
.
.
.
commit
|
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|
tree
2007-03-20
cjf
i
elds
All infe
r
nal
p
rograms now
w
ork; needs s
o
me more fine
.
.
.
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|
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2007-03-19
cjfields
bug 2241
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2007-03-14
c
jfiel
d
s
small f
i
x
es
commit
|
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2007-03-13
c
jfie
l
ds
IPC:
:
Run (required for Glimmer, Gene
m
ark
w
rappers)
commit
|
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2007-03-13
cjfields
GeneMark, Glimmer
w
r
a
ppe
r
module
s
, tests, and test
.
.
.
commit
|
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|
tree
2007-02-17
cjfields
cmsearch
nows
works; res
t
h
o
p
e
fully
b
y Mon
.
commit
|
commitdiff
|
tree
2007-02-16
cjfi
e
lds
I
nfernal w
r
ap
p
er (not functiona
l
y
e
t)
commit
|
commitdiff
|
tree
2007-02-07
cjfield
s
update
s
and sma
l
l twea
k
s
commit
|
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|
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2007-02-07
cjfield
s
erpin wrapper
(needs more work
.
.
.
)
commit
|
commitdiff
|
tree
2007-02-05
c
j
fie
l
ds
Allow outf
i
le or tempfile (for do
w
nstre
a
m
w
o
r
k
)
commit
|
commitdiff
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tree
2007-02-04
c
j
fields
obscure
origins a bit more (hehehe
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|
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2007-02-04
cjfields
RNAMoti
f
tools
w
rapper
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2006-10-26
cjfie
l
ds
Change to T
e
s
t::M
o
re
commit
|
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2006-10-26
cjfiel
d
s
Add Test
:
:Mor
e
(a
p
parently wasn't added)
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|
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2006-10-26
cjfie
l
ds
Add som
e
POD for CLOS
E
()
commit
|
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2006-10-26
cjfie
l
ds
Added CLO
S
E() tied
f
i
l
e
handle method (bug 2126)
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2006-10-13
cjfields
Rev
e
rt t
e
st
s
; repeated calls n
o
w work
(
ex
p
ected be
h
avio
r
)
commit
|
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2006-10-10
cjfields
Fix tests;
n
eed to loo
k
at Analysis::soap
:
:
r
esults()
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2006-07-11
cjfields
Bu
g
2040
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