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2011-07-26	Chris Fields	Merge pull request #19 from carandraug/script/extract_featur...	commit \| commitdiff \| tree
2011-07-25	Chris Fields	Merge pull request #18 from carandraug/script/perl...	commit \| commitdiff \| tree
2011-07-25	Chris Fields	Merge pull request #17 from carandraug/master	commit \| commitdiff \| tree
2011-06-20	Chris Fields	Merge pull request #16 from chadadavis/master	commit \| commitdiff \| tree
2011-06-02	Chris Fields	Merge pull request #15 from tupinek/master	commit \| commitdiff \| tree
2011-05-10	Chris Fields	fix spelling errors, fixes #3228	commit \| commitdiff \| tree
2011-04-13	Chris Fields	fix skip test count (off by 1)	commit \| commitdiff \| tree
2011-04-13	Chris Fields	Merge branch 'topic/bug_3196', fixes #3196 but needs...	commit \| commitdiff \| tree
2011-04-13	Chris Fields	Merge remote branch 'wkretzsch/master'	commit \| commitdiff \| tree
2011-02-14	Chris Fields	Merge branch 'master' of github.com:bioperl/bioperl...	commit \| commitdiff \| tree
2010-11-09	Chris Fields	Merge branch 'topic/gjuggler_tree_fixes'	commit \| commitdiff \| tree
2010-11-08	Chris Fields	Merge branch 'master' of https://github.com/gjuggler...	commit \| commitdiff \| tree
2010-08-17	Chris Fields	Merge branch 'circular'	commit \| commitdiff \| tree
2010-07-29	Robert Buels	strip keyword substitution from perl modules	commit \| commitdiff \| tree
2010-07-23	Chris Fields	[RT 58464] patching to allow file names with spaces	commit \| commitdiff \| tree
2010-07-23	Chris Fields	Merge branch 'topic/cjfields_interpro_get_dbxref'	commit \| commitdiff \| tree
2010-07-03	Chris Fields	Merge branch 'topic/species_proxy'	commit \| commitdiff \| tree
2010-06-29	Chris Fields	Merge branch 'master' into topic/species_proxy	commit \| commitdiff \| tree
2010-06-22	Chris Fields	fix conflict	commit \| commitdiff \| tree
2010-06-10	Chris Fields	Ben's changes to fix bug with file, along with comment...	commit \| commitdiff \| tree
2010-06-07	Chris Fields	Merge branch 'topic/bug3089'	commit \| commitdiff \| tree
2010-06-06	Chris Fields	Merge Brian's branch	commit \| commitdiff \| tree
2010-06-04	Chris Fields	Merge branch 'master' of github.com:bioperl/bioperl...	commit \| commitdiff \| tree
2010-05-25	Chris Fields	Merge branch 'master' of github.com:bioperl/bioperl...	commit \| commitdiff \| tree
2010-05-20	Chris Fields	can't lookup an undefined value as an executable	commit \| commitdiff \| tree
2010-05-20	Chris Fields	Merge branch 'master' of github.com:bioperl/bioperl...	commit \| commitdiff \| tree
2010-05-20	Chris Fields	Merge branch 'master' of github.com:bioperl/bioperl...	commit \| commitdiff \| tree
2010-05-17	Chris Fields	Merge branch 'master' of git@github.com:bioperl/bioperl...	commit \| commitdiff \| tree
2010-05-10	cjfields	make test less prone to volatile changes	commit \| commitdiff \| tree
2010-03-06	cjfields	fix remoteblast parsing (almost complete refactor of...	commit \| commitdiff \| tree
2010-03-05	cjfields	next, not redo	commit \| commitdiff \| tree
2010-03-04	cjfields	Add a finite number of attempts for report retrieval	commit \| commitdiff \| tree
2010-03-04	cjfields	remote BLAST is timing out when using CDD and rpsblast	commit \| commitdiff \| tree
2009-11-25	cjfields	add n parameter (not tested) courtesy Nevo Band (not...	commit \| commitdiff \| tree
2009-09-16	cjfields	[cage cleaning]	commit \| commitdiff \| tree
2009-07-03	cjfields	catch edge cases where we unintentionally pass an undef...	commit \| commitdiff \| tree
2009-05-04	cjfields	minor formatting fix	commit \| commitdiff \| tree
2009-02-23	cjfields	first pass at a Komodo BioPerl template file	commit \| commitdiff \| tree
2009-01-15	cjfields	Don't quotemeta if using Windows	commit \| commitdiff \| tree
2008-12-20	cjfields	remove BPlite tests completely	commit \| commitdiff \| tree
2008-12-20	cjfields	Remove BPlite from use	commit \| commitdiff \| tree
2008-12-11	cjfields	[bug 2707]	commit \| commitdiff \| tree
2008-12-03	cjfields	Reorganize Tools tests (needs some more splitting)	commit \| commitdiff \| tree
2008-11-28	cjfields	move into directory structure	commit \| commitdiff \| tree
2008-11-25	cjfields	po, not poa	commit \| commitdiff \| tree
2008-11-25	cjfields	split up AlignIO tests	commit \| commitdiff \| tree
2008-11-17	cjfields	[tests]	commit \| commitdiff \| tree
2008-02-11	cjfields	remove comment (make sure tempfile/tempdirs stored...	commit \| commitdiff \| tree
2008-02-11	cjfields	Fix for bug 2413. Shouldn't we delegate all IO-related...	commit \| commitdiff \| tree
2007-10-23	cjfields	bug 2367	commit \| commitdiff \| tree
2007-07-06	cjfields	Must allow other SearchIO readmethods (anything that...	commit \| commitdiff \| tree
2007-01-19	cjfields	change File::Path verbosity to only be TRUE when debugging	commit \| commitdiff \| tree
2007-01-18	cjfields	remove comments; cleanup() should now work (fingers...	commit \| commitdiff \| tree
2007-01-18	cjfields	revert back to normal from debugging	commit \| commitdiff \| tree
2007-01-18	cjfields	Bug 2183	commit \| commitdiff \| tree

BioPerl wrappers

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