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strip keyword substitution from perl modules
2010-07-29
Robert Bu
e
ls
str
i
p keywor
d
substitut
i
on from perl modules
commit
|
commitdiff
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tree
2010-07-23
Chri
s
Fields
[RT 584
6
4]
p
atching to allo
w
file names wit
h
spaces
commit
|
commitdiff
|
tree
2010-07-23
C
hris Fields
Merge branch 'to
p
ic/c
j
fi
e
l
ds
_
interpro
_
get_dbxref'
commit
|
commitdiff
|
tree
2010-07-03
Ch
r
i
s Fields
Me
r
ge bran
c
h '
t
op
i
c/spe
c
ies_proxy'
commit
|
commitdiff
|
tree
2010-06-29
Chris Fields
Merge branch 'master
'
in
t
o
t
opic
/
species_
p
roxy
commit
|
commitdiff
|
tree
2010-06-22
Chris F
i
elds
fix c
o
nflic
t
commit
|
commitdiff
|
tree
2010-06-10
Chris Fields
Ben'
s
change
s
to fix
bug with file, along with c
o
mm
e
nt
.
.
.
commit
|
commitdiff
|
tree
2010-06-07
Ch
r
is F
i
elds
M
erge bra
n
ch '
t
opic/
b
ug3089'
commit
|
commitdiff
|
tree
2010-06-06
Chris Fie
l
ds
Merge Brian's branch
commit
|
commitdiff
|
tree
2010-06-04
Chris Fields
M
erge branch '
m
aster'
o
f gith
u
b
.
com:bioperl
/
bioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-25
Chris
F
i
elds
Merge bra
n
c
h
'mast
e
r' of gi
t
hub
.
com:bioperl
/
bioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-20
Chris F
i
el
d
s
can't l
o
okup an un
d
efined value as an
execu
t
a
ble
commit
|
commitdiff
|
tree
2010-05-20
C
h
ris Fi
e
lds
M
e
r
ge
branch 'master' of g
i
thub
.
com:bioperl/b
i
operl
.
.
.
commit
|
commitdiff
|
tree
2010-05-20
Chris Fie
l
ds
Merg
e
bra
n
ch 'master' of gi
t
hub
.
com:bioperl
/
bioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-17
Chris Fiel
d
s
Merge branch 'mast
e
r
' of git@gi
t
h
ub
.
co
m
:b
i
o
perl
/
bioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-10
cjfiel
d
s
make
t
est less prone
t
o
v
olati
l
e changes
commit
|
commitdiff
|
tree
2010-03-06
cjfields
fix
r
emo
t
eblast parsin
g
(al
m
ost complete re
f
actor of
.
.
.
commit
|
commitdiff
|
tree
2010-03-05
cjfields
next, not r
e
do
commit
|
commitdiff
|
tree
2010-03-04
cj
f
ields
Add a
f
ini
t
e number
of a
t
tempts for r
e
port retrieval
commit
|
commitdiff
|
tree
2010-03-04
cjfie
l
ds
remot
e
BLAST is tim
i
ng
o
ut wh
e
n using CDD and rpsblast
commit
|
commitdiff
|
tree
2009-11-25
cjfields
add n parameter (
n
ot test
e
d
) courtesy
Nevo Band
(
n
o
t
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
cjfields
[cage cleani
n
g
]
commit
|
commitdiff
|
tree
2009-07-03
cjfiel
d
s
catch edge cas
e
s where
we uninte
n
ti
o
nally pass
a
n un
d
ef
.
.
.
commit
|
commitdiff
|
tree
2009-05-04
cjfields
minor formatting
f
i
x
commit
|
commitdiff
|
tree
2009-02-23
cj
f
ields
fi
r
st pass
a
t a Komo
d
o BioPerl template file
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|
commitdiff
|
tree
2009-01-15
cjf
i
elds
Don't quotemeta if us
i
ng Windows
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|
commitdiff
|
tree
2008-12-20
cjfields
rem
o
v
e
B
Plite te
s
t
s completely
commit
|
commitdiff
|
tree
2008-12-20
cjfiel
d
s
Remove BPlite from u
s
e
commit
|
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|
tree
2008-12-11
cjf
i
elds
[
b
ug 2
7
07]
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Reorganize
Tools
tests (needs some more splitting)
commit
|
commitdiff
|
tree
2008-11-28
cjfields
m
ove into
directory structure
commit
|
commitdiff
|
tree
2008-11-25
cjfield
s
po, not
poa
commit
|
commitdiff
|
tree
2008-11-25
cj
f
iel
d
s
split up A
l
ignIO
t
ests
commit
|
commitdiff
|
tree
2008-11-17
c
j
fiel
d
s
[
te
s
t
s
]
commit
|
commitdiff
|
tree
2008-02-11
cjfiel
d
s
remove comment (make sure te
m
pf
i
le/tempdirs stored
.
.
.
commit
|
commitdiff
|
tree
2008-02-11
cjf
i
elds
Fi
x
for bug 2413
.
S
h
ouldn't
w
e
del
e
gate
a
ll IO-rela
t
ed
.
.
.
commit
|
commitdiff
|
tree
2007-10-23
cjfields
bug
2
3
6
7
commit
|
commitdiff
|
tree
2007-07-06
c
j
fi
e
lds
M
ust allow other SearchIO r
e
admethods (anythin
g
th
a
t
.
.
.
commit
|
commitdiff
|
tree
2007-01-19
cjfields
chan
g
e
File::Path
v
e
r
b
osity to
o
n
l
y be TRUE wh
e
n debugging
commit
|
commitdiff
|
tree
2007-01-18
cjfie
l
ds
remove co
m
ments; cleanup() shoul
d
no
w
work (fing
e
rs
.
.
.
commit
|
commitdiff
|
tree
2007-01-18
cjfiel
d
s
revert back to normal from
d
e
b
u
g
ging
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|
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|
tree
2007-01-18
cjfi
e
l
d
s
B
u
g 2183
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|
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